BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473866
Length=1666
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47128.1 | Symbols: RD21, RD21A | Granulin repeat cysteine p... 2634 0.0
AT5G43060.1 | Symbols: | Granulin repeat cysteine protease fam... 996 0.0
> AT1G47128.1 | Symbols: RD21, RD21A | Granulin repeat cysteine
protease family protein | chr1:17282825-17285670 REVERSE LENGTH=1764
Length=1764
Score = 2634 bits (1426), Expect = 0.0
Identities = 1599/1681 (95%), Gaps = 18/1681 (1%)
Strand=Plus/Plus
Query 1 CATACAATCGTCTTCTTCATCATTTTCTCTTCTTCTTCTCCAAGAAAACAGTGAAGAAGA 60
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 CATACAATCGTCTTCTTCATCATTTTCTCTTCTTCTTCTCCAAGAAAACACTGAAGAAG- 59
Query 61 AAATGGGGTTCCTTAAGCCAGCCATAGCGATCCTTTTCCTAGCGATGGTCGCCGTTGCAT 120
|||||||||||||||||||| |||| ||||| ||||| |||||||||||||||||| |||
Sbjct 60 AAATGGGGTTCCTTAAGCCAACCATGGCGATTCTTTTTCTAGCGATGGTCGCCGTTTCAT 119
Query 121 CAGCCGTGGACATGTCAATCATCTCCTACGACGAGAAACACGGCGTCTCCACCACCGGTG 180
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 120 CAGCCGTGGACATGTCAATCATCTCCTACGACGAGAAACATGGCGTCTCCACCACCGGTG 179
Query 181 GCCGTAGCGACGCAGAGGTCATGAGTATCTACGAGGCGTGGTTGGTGAAACACGGGAAGG 240
|||||||||| || ||||| ||||||||||||||||| ||||||||||||||||| ||||
Sbjct 180 GCCGTAGCGAAGCCGAGGTTATGAGTATCTACGAGGCATGGTTGGTGAAACACGGCAAGG 239
Query 241 GTCAGAATCAGAACTCTCTTGTTGAGAAAGATCGACGTTTCGAGATCTTTAAAGATAATC 300
||||| ||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 240 CTCAGAGCCAGAACTCTCTTGTTGAGAAAGATCGACGGTTCGAGATCTTTAAAGACAATC 299
Query 301 TTCGTTTCATCGACGATCATAACAAGAAGAATCTTAGTTATAGATTGGGTTTGACTCGGT 360
|||||||| |||| || |||||| |||||||||||||||||||||||||||||||||| |
Sbjct 300 TTCGTTTCGTCGATGAACATAACGAGAAGAATCTTAGTTATAGATTGGGTTTGACTCGTT 359
Query 361 TTGCGGATCTTACTAACGATGAGTATAGATCCAAGTATCTTGGAGCTAAGATGGAGAAGA 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 360 TTGCGGATCTTACTAACGATGAGTATAGATCCAAGTATCTTGGAGCTAAGATGGAGAAGA 419
Query 421 AAGGTGAGAGAAGGACTAGCCAACGGTACGAGGCTCGTGTCGGTGATGAGCTACCAGAGT 480
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 420 AAGGTGAGAGAAGGACTAGCCTACGGTACGAGGCTCGTGTCGGTGATGAGCTACCGGAGT 479
Query 481 CTATTGACTGGAGGAAGAAAGGAGCCGTGGCTGAGGTCAAAGATCAGGGTAGTTGCGGGA 540
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 480 CTATTGACTGGAGGAAGAAAGGAGCCGTGGCTGAGGTCAAAGATCAGGGTGGTTGCGGGA 539
Query 541 GTTGTTGGGCATTCTCAACCACTGGAGCAGTGGAGGGGATTAACCAGATCGTAACCGGAG 600
|||||||||| || ||||||| ||||||||||||||| || |||||||||||||||||||
Sbjct 540 GTTGTTGGGCGTTTTCAACCATTGGAGCAGTGGAGGGAATAAACCAGATCGTAACCGGAG 599
Query 601 ACTTAATATCCTTGTCCGAACAAGAGTTGGTCGATTGTGACACTTCATACAACGAAGGTT 660
|| ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 600 ACCTAATAACCTTGTCTGAACAAGAGTTGGTCGATTGTGACACTTCATACAACGAAGGTT 659
Query 661 GTAACGGAGGTCTCATGGACTATGCTTTTGAGTTCATTATCAAGAATGGTGGAATCGATA 720
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 660 GTAACGGAGGTCTTATGGACTATGCTTTTGAGTTCATTATCAAGAATGGTGGAATCGATA 719
Query 721 CAGAAAAAGATTATCCTTACAAGGGTGTCGATGGAACTTGTGACCAGATCAGGAAAAACG 780
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 720 CAGACAAAGATTATCCTTACAAGGGTGTTGATGGAACTTGTGACCAGATCAGGAAAAACG 779
Query 781 CTAAAGTTGTCACAATCGATTCATATGAGGATGTTCCCACTTACAGCGAGGAATCGTTGA 840
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 780 CTAAAGTTGTCACTATCGATTCATATGAGGATGTTCCAACTTACAGCGAGGAATCGTTGA 839
Query 841 AGAAAGCAGTTGCTCATCAACCCGTTAGCGTCGCCATTGAGGCTGGTGGTCGTGCGTTCC 900
||||||||||||||||||||||| ||||| | ||||||||||||||||||||||||||||
Sbjct 840 AGAAAGCAGTTGCTCATCAACCCATTAGCATTGCCATTGAGGCTGGTGGTCGTGCGTTCC 899
Query 901 AGCTCTATGATTCGGGTATATTTGATGGAACTTGTGGAACACAACTAGACCATGGAGTTG 960
|||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 900 AGCTCTATGATTCGGGTATATTTGATGGAAGTTGTGGAACACAACTAGACCACGGAGTTG 959
Query 961 TGGCGGTCGGATACGGAACCGAGAACGGCAAAGACTACTGGATTGTGAGAAACTCATGGG 1020
||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 960 TGGCGGTTGGATACGGAACTGAGAACGGCAAAGATTACTGGATTGTGAGAAACTCATGGG 1019
Query 1021 GTAAAAGCTGGGGAGAGAGTGGATACTTAAAGATGGAGCGTAACATCGCGTCTTCATCCG 1080
|||||||||||||||||||||||||| ||| ||||| ||||||||| ||||||||||| |
Sbjct 1020 GTAAAAGCTGGGGAGAGAGTGGATACCTAAGGATGGCGCGTAACATTGCGTCTTCATCAG 1079
Query 1081 GAAAATGTGGAATCGCGATTGAACCTTCATACCCGATCAAGAATGGCGAAAACCCGCCAA 1140
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1080 GAAAATGTGGAATCGCGATTGAACCTTCATACCCGATAAAGAATGGCGAAAACCCGCCAA 1139
Query 1141 ACCCGGGACCTTCACCTCCATCTCCCATCAAGCCTCCAACCCAATGTGACAGTTACTACA 1200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 ACCCGGGACCTTCACCTCCATCTCCCATCAAGCCTCCAACCCAATGTGACAGTTACTACA 1199
Query 1201 CTTGTCCAGAGAGCAACACTTGTTGTTGTCTGTTTGAGTATGGAAAGTATTGCTTTGCTT 1260
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1200 CTTGTCCTGAGAGCAACACTTGTTGTTGTCTGTTTGAGTATGGCAAGTATTGCTTTGCTT 1259
Query 1261 GGGGATGTTGCCCACTAGAAGCTGCCACTTGCTGTGATGACAACTATAGTTGCTGCCCGC 1320
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
Sbjct 1260 GGGGATGTTGCCCACTAGAAGCAGCCACTTGCTGTGATGACAACTATAGTTGCTGCCCTC 1319
Query 1321 ACGAGTACCCGGTTTGTGACCTTGATCAGGGAACCTGTTTATTGAGCAAGAACAGTCCAT 1380
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1320 ACGAGTACCCGGTTTGTGACCTTGATCAAGGAACCTGTTTATTGAGCAAGAACAGTCCAT 1379
Query 1381 TTAGTGTTAAGGCCTTAAAGCGTAAACCCGCAACGCCATTCTGGTCACAAGGCAGAAAGA 1440
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 TTAGTGTTAAGGCCTTAAAGCGTAAACCCGCAACGCCATTCTGGTCACAAGGCAGAAAGA 1439
Query 1441 ACATTGCCTAAAACATTGCTTCTTCA------C--------ATGAGAGAAGAGATCTCTC 1486
|||||||||||| ||||||||||||| | |||||||||||||||||||
Sbjct 1440 ACATTGCCTAAA-CATTGCTTCTTCAAGAGGACTCTGGCTCATGAGAGAAGAGATCTCTC 1498
Query 1487 TGAAGGGATTTATCAGATGCTTTTTAATGTTGTTGTTTATGCCATAACTAGATACATAAA 1546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1499 TGAAGGGATTTATCAGATGCTTTTTAATGTTGTTGTTTATGCCATAACTAGATACATAAA 1558
Query 1547 AA-TGCAGCTTTTGGGGTTTCGTGTGTATTAAAAAAGCACCCTAAGTTTCATTCAGTTTC 1605
|| ||||||| ||||| |||||||| ||| ||||||| |||||| |||||||||||||||
Sbjct 1559 AAATGCAGCTGTTGGG-TTTCGTGTATATAAAAAAAGGACCCTATGTTTCATTCAGTTTC 1617
Query 1606 ATAGTTGGGTTTCATTGATACAGTAAATTTATTGTTAATTCAAGAAAATTTAATATTTAT 1665
||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1618 ATAGTTGGGTTTCATTGATACAGTACATTTATTGTTAATTCAAGAAAATTGAATATTTAT 1677
Query 1666 G 1666
|
Sbjct 1678 G 1678
> AT5G43060.1 | Symbols: | Granulin repeat cysteine protease family
protein | chr5:17269507-17272164 REVERSE LENGTH=1716
Length=1716
Score = 996 bits (539), Expect = 0.0
Identities = 1125/1400 (80%), Gaps = 71/1400 (5%)
Strand=Plus/Plus
Query 89 GATCCTTTTCCTAGCGATGGTCGCCGTTGCATCA-GCCGTGGACATGTCAATCATCTCCT 147
||||||| ||||||| ||| ||| |||| ||| | ||| |||||||||||||||||||||
Sbjct 74 GATCCTTCTCCTAGCAATGATCGGCGTTTCAT-ATGCCATGGACATGTCAATCATCTCCT 132
Query 148 ACGACGAGAAA-CACGGCGTC-TCCACCACCG-G--TGGCCGTAGCGACGCAGAGG-TCA 201
||||||| ||| ||| | | | |||||||| | ||||||||||| | |||| | |
Sbjct 133 ACGACGA-AAACCAC--C-ACAT-CACCACCGAGACCAGCCGTAGCGACTCGGAGGTTGA 187
Query 202 TGAGTATCTACGAGGCGTGGTTGGTGAAACACGGGAAG--GGTCA-GAATCAGAACTCTC 258
||| |||||||| |||||| ||||| ||||||||||| | | |||||| ||| ||
Sbjct 188 -GAGAATCTACGAAGCGTGGATGGTGGAACACGGGAAGAAGAAGATGAATCAAAACGGTC 246
Query 259 TT-GT--TGAGAAAGATCGACGTTTCGAGATCTTTAAAGATAATCTTCGTTTCATCGACG 315
|| || |||||||||| | | ||||||||||||||||||||||||||||||||||| |
Sbjct 247 TTGGTGCAGAGAAAGATCAAAGATTCGAGATCTTTAAAGATAATCTTCGTTTCATCGATG 306
Query 316 ATCATAACAAGAAGAATCTTAGTTATAGA-TTGGGTTTGACTCGGTTTGCGGATCTT-AC 373
| ||||||| || || || ||||||| | || ||||| || |||||||| ||| || ||
Sbjct 307 AACATAACACCAAAAACCTCAGTTATAAACTT-GGTTTAACCCGGTTTGCTGAT-TTAAC 364
Query 374 TAACGATGAGTATAGATCCAAGTATCTTGGAGCTAAGATGGA-GAAGAAAGG-TGAGAGA 431
|| || ||||| |||| | ||| ||||| ||||| | || ||| | || | || |
Sbjct 365 CAATGAGGAGTACCGATCTATGTACCTTGGTGCTAA-ACCGACCAAG-AGGGTTTTGA-A 421
Query 432 AGGACTAGCCAACGGTA-CGAGGCTCGTGTCGGTGATGAGCTACCAGAGTCTATTGACTG 490
| || || | ||||| | |||| ||||| ||||| | ||| || || || |||||||
Sbjct 422 A--ACCAGTGATCGGTATC-AGGCGCGTGTTGGTGACGCGCTTCCTGATTCGGTTGACTG 478
Query 491 GAGGAAGA-AAGGAGCCGTGGCTGAGGTCAAAGATCAGGGTAGTTGCGGGAGTTGTTGGG 549
|| ||| | |||| ||||| ||||| || |||||||| || || || |||||||||||||
Sbjct 479 GA-GAAAAGAAGGTGCCGTCGCTGATGTTAAAGATCAAGGAAGCTGTGGGAGTTGTTGGG 537
Query 550 CATTCTCAACCACTGGAGCAGTGGAGGGGATTAACCAGATCGTAACCGGAGACTTAATAT 609
|||||||||| | |||||||||||| || || ||| |||| || || ||||| |||||||
Sbjct 538 CATTCTCAACTATTGGAGCAGTGGAAGGAATAAACAAGATTGTGACAGGAGATTTAATAT 597
Query 610 CCTTGTCCGAACAAGAGTTGGTCGATTGTGACACTTCATACAACGAAGGTTGTAACGGAG 669
| ||||| |||||||| ||||| ||||||||||| || || ||| |||| ||||| || |
Sbjct 598 CTTTGTCTGAACAAGAATTGGTTGATTGTGACACATCTTATAACCAAGGATGTAATGGTG 657
Query 670 GTCTCATGGACTATGCTTTTGAGTTCATTATCAAGAATGGTGGAATCGATACAGAAAAAG 729
|| | ||||||||||| |||||||| |||||||| |||||||| || ||||| ||| |
Sbjct 658 GTTTAATGGACTATGCGTTTGAGTTTATTATCAAAAATGGTGGTATTGATACCGAAGCGG 717
Query 730 ATTATCCTTACAAGGGTGTC-GATGGAAC-TTGTGACCAGATCAGGAAAAACGCTAAAGT 787
||||||||||||||| || | ||||| | ||||||||||| ||||||||| ||||| ||
Sbjct 718 ATTATCCTTACAAGGCTG-CTGATGG-TCGTTGTGACCAGAACAGGAAAAATGCTAAGGT 775
Query 788 TGTCACAATCGATTCATATGAGGATGTTCCC--ACTTACAGCGAGGAATCGT-TGAAGAA 844
||| || || ||||||||||| |||| |||| | ||||||||| || | | |||||
Sbjct 776 TGTTACCATTGATTCATATGAAGATG-TCCCTGA-GAACAGCGAGGCGTC-TCTAAAGAA 832
Query 845 AGCAGTT-GCTCATCAACCCGTTAGCGTCGCCATTGAGGCTGGTGGTCGTGCGTTCCAGC 903
||| || ||||| || || |||| ||||||||||| || |||||||| || |||||||
Sbjct 833 AGC-TTTGGCTCACCAGCCTATTAGTGTCGCCATTGAAGCGGGTGGTCGCGCTTTCCAGC 891
Query 904 TCTATGATTCGGGTATATTTGATGGAAC-TTGTGGAACACAACTAGACCATGGAGTTGTG 962
||||| ||||||| |||||||||| || |||||| || | ||||||| || ||||||
Sbjct 892 TCTATTCTTCGGGTGTATTTGATGG-ACTTTGTGGGACGGAGTTAGACCACGGTGTTGTG 950
Query 963 GCGGTCGGATACGGAACCGAGAACGGCAAA-GACTACTGGATTGTGAGAAACTCATGGGG 1021
|| || || || |||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 951 GCTGTGGGTTATGGAACCGAGAACGG-AAAGGACTACTGGATTGTGAGAAACTCATGGGG 1009
Query 1022 TAAA-AGCTGGGGAGAGAGTGGATACTTAAAGATGG-AGCGTAACATCGC-GTCTTCATC 1078
||| || ||||||||||| |||||| ||||||||| | |||||||| | | | || |
Sbjct 1010 -AAACAGATGGGGAGAGAGCGGATACATAAAGATGGCA-CGTAACATTGAAG-CGCCAAC 1066
Query 1079 CGGAAAATGTGGAATCGCGATTGAACCTTCATACCCGATCAAGAATGG-CGAAAACCCGC 1137
||||| ||||||||||| || || |||| || ||||||||||| || | | ||||| |
Sbjct 1067 AGGAAAGTGTGGAATCGCTATGGAGGCTTCGTATCCGATCAAGAAAGGTC-AGAACCCAC 1125
Query 1138 CAAACCCGGGACCTTCACCTCCATCTCCCATCAAGCCTCCAACC-CAATGTGACA-GTTA 1195
||||||| || || ||||| ||||||||||| ||||| |||||| || ||||||| || |
Sbjct 1126 CAAACCCTGGCCCGTCACCACCATCTCCCATTAAGCCACCAACCACA-TGTGACAAGT-A 1183
Query 1196 CTACACTTGTCCAGAGAGCAACACTTGTTGTTGTCTGTTTGAGTATGGAAAGTATTGCTT 1255
|| | |||| || ||||||||||||||||||||||| | ||||||| ||||| |||||
Sbjct 1184 CTTCTCTTGCCCTGAGAGCAACACTTGTTGTTGTCTCTACAAGTATGGTAAGTACTGCTT 1243
Query 1256 TGCTTGGGGATGTTGCCCACTAGAAGCTGCCACTTGCTGTGATGACAACT-ATAGTTGCT 1314
| |||||||||||||| || |||||||| |||||||| ||||| |||| | |||||||
Sbjct 1244 CGGATGGGGATGTTGCCCGCTCGAAGCTGCTACTTGCTGCGATGATAACTCA-AGTTGCT 1302
Query 1315 GCCCGCACGAGTACCCGGTTTGTGACCTTGATCAG-GGAACCTGTTT-ATTGAGCAAGAA 1372
| || || |||||||||||||||||| || | | | ||||||||||| || |||||||||
Sbjct 1303 GTCCTCATGAGTACCCGGTTTGTGACGTTAACC-GCGGAACCTGTTTGAT-GAGCAAGAA 1360
Query 1373 CAGTCCATTTAGTGTTAAGGCCTTAAAGCGTAAACCCGCAACGCCATTCTGGTCACAAG- 1431
|||||| ||||| || ||||| |||||||||| |||||||| || |||||| || |||
Sbjct 1361 CAGTCCGTTTAGCGTGAAGGCTTTAAAGCGTACACCCGCAATACCGTTCTGGGCA-AAGA 1419
Query 1432 GCAGAAAGAACATTGCCTAA 1451
|||||||| ||||||| |||
Sbjct 1420 GCAGAAAGCACATTGCGTAA 1439
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82328893800
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5