BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473867
Length=641
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47200.1 | Symbols: WPP2 | WPP domain protein 2 | chr1:17298... 808 0.0
> AT1G47200.1 | Symbols: WPP2 | WPP domain protein 2 | chr1:17298031-17298817
REVERSE LENGTH=787
Length=787
Score = 808 bits (437), Expect = 0.0
Identities = 513/549 (93%), Gaps = 8/549 (1%)
Strand=Plus/Plus
Query 1 AAATGGCAGAAACCTCCGAGACAATCACCACCACGATCTCATCGCCGCCACCGGAATCCG 60
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 93 AAATGGCAGAAACCGCCGAGACAATCAACACCACGATCTCATCGCCGCCACCGGAATCCG 152
Query 61 AAAGCTCCACCAC-ATTATCTACAATGACAGACCCAACATCTCAAGAATTAGCCTCAAGA 119
||||||||||||| ||| ||| |||||||||| ||||||||||||||| |||||||| |
Sbjct 153 AAAGCTCCACCACTATT-TCTGCAATGACAGATCCAACATCTCAAGAAGCAGCCTCAAAA 211
Query 120 GACACAGATCTGACGAAAGAAGCCGAATCAGAGAAGAAACCCGGAGGAATCTCTCTCCGA 179
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 212 GACACAGATCTGACGAAAGAAGCCGAATCAGAGAAGAAACCAGGAGGAATCTCTCTCCGA 271
Query 180 ATCTGGCCACCGACTCAGAAAACTCGCGACGCCG-TCTTGAATCGCCTAATCGAGACTTT 238
|||||||||||||||||||||||||||||||||| || |||||||||| |||||||| ||
Sbjct 272 ATCTGGCCACCGACTCAGAAAACTCGCGACGCCGTTC-TGAATCGCCTGATCGAGACCTT 330
Query 239 ATCCACCGAATCTATCCTCTCTAAGAGATACGGAACTCTTAATTCCGATGAAGCCACCAC 298
|||||||||||| |||||||||||||||||||| |||||||| || || || || |||||
Sbjct 331 ATCCACCGAATCAATCCTCTCTAAGAGATACGGTACTCTTAAATCTGACGATGCAACCAC 390
Query 299 CGTCGCGAAATC-TATTGAAGAAGAGGCTTATGGTGTTGCTTCGAATGCTGTGGT-GAGT 356
|||||||||| | ||| ||||||||||||||||||||||||||||||||||| || ||||
Sbjct 391 CGTCGCGAAA-CTTATCGAAGAAGAGGCTTATGGTGTTGCTTCGAATGCTGT-GTCGAGT 448
Query 357 GATGATGATGGGATTAAGATTCTTGAGGTTTATTCTAAAGAGATTAGTAAGAGGATGCTT 416
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 449 GATGATGATGGGATTAAGATTCTTGAGCTTTATTCTAAAGAGATTAGTAAGAGGATGCTT 508
Query 417 GAATCTGTTAAGGCTAGATCTAATGGTAATGATGGAAATGGAAGTGTGGAGGATAAGAAT 476
||||||||||||||||||||||||| || || |||||||||||||||||||||| |||
Sbjct 509 GAATCTGTTAAGGCTAGATCTAATGCTAGTGTTGGAAATGGAAGTGTGGAGGATGCTAAT 568
Query 477 ACTGATGCGAGTGAGGTTTCTAAAGATGATGCAGGTCCTGTTTCAGAGGAGGAGAAGAGT 536
|||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 569 ACTGATGCTAGTGAGGTTTCTAAAGATGATGCTGGTCCTGCTTCAGAGGAGGAGAAGAGT 628
Query 537 GAGGCTTGA 545
|||||||||
Sbjct 629 GAGGCTTGA 637
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30944234552
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5