BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473869
Length=1468
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47210.2 | Symbols: CYCA3;2 | cyclin-dependent protein kinas... 1984 0.0
AT1G47220.1 | Symbols: CYCA3;3 | Cyclin A3;3 | chr1:17303676-17... 950 0.0
AT1G47230.2 | Symbols: CYCA3;4 | CYCLIN A3;4 | chr1:17306577-17... 797 0.0
> AT1G47210.2 | Symbols: CYCA3;2 | cyclin-dependent protein kinase
3;2 | chr1:17300951-17302866 FORWARD LENGTH=1486
Length=1486
Score = 1984 bits (1074), Expect = 0.0
Identities = 1360/1494 (91%), Gaps = 35/1494 (2%)
Strand=Plus/Plus
Query 1 CACTCATCCCAtctctcaat-ctctcaaa-ctc--tctct-tcctctc-tctctctctca 54
||||||||| |||||||||| |||||||| ||| |||| || || | || |||||||
Sbjct 1 CACTCATCCGATCTCTCAATCCTCTCAAATCTCAAACTCTCTCTTCCCATCACTCTCTCG 60
Query 55 ctctctcttcaatctcatctcaACCATGACGGAGCAAGAGATCTGCGTGAGGGTTACGAG 114
||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| ||
Sbjct 61 CTCTCTCTTCAATCTCATCTCAATCATGACAGAGCAAGAGATCTGCGTGAGGGTTACAAG 120
Query 115 AGCGGCGGCG-AA-GAGAAA------A--GCGATGGGTATTGACGAAGATCGTGTCAGCA 164
|||||||||| || || ||| | |||||||||||||||| |||||| |||| ||
Sbjct 121 AGCGGCGGCGAAACGA-AAAGCTTCGACGGCGATGGGTATTGACGGAGATCGGGTCAACA 179
Query 165 AGAAGAGAGTTGTTCTTGGTGAGCTTCTTAATGTCTCCAATGTCAAAGTTTTAGCTAATC 224
|||||||||||||||| ||||||||||| || |||||||||||||| | || |||||||
Sbjct 180 AGAAGAGAGTTGTTCTCGGTGAGCTTCTAAACGTCTCCAATGTCAATCTCTTGGCTAATC 239
Query 225 TCAATCAGAAGAGAGAAACCCAGAAGCCAAAAAAGAGTCTTAGACCTCCTCCGGCGAAAC 284
|||||||||||| |||||||||||||||||||| || ||||| |||||||||||||||||
Sbjct 240 TCAATCAGAAGAAAGAAACCCAGAAGCCAAAAAGGAATCTTAAACCTCCTCCGGCGAAAC 299
Query 285 AGCTTAAGACAGCTCCGGTGG---TTATTGACCTAGATTCAGAATCTGACATTGATTCTC 341
|| ||||| |||||||||||| ||||||||||||| ||| ||||||||||||||||||
Sbjct 300 AGATTAAGTCAGCTCCGGTGGCTATTATTGACCTAGAATCAAAATCTGACATTGATTCTC 359
Query 342 GATCTCATGATCCTCAAATGTGTGGACCTTATGTCAG-AGACATCTACGAGTATCTTCGT 400
||||| |||||||||||||||||||||||||||| | || ||||| ||||||||||||
Sbjct 360 GATCTGATGATCCTCAAATGTGTGGACCTTATGT-TGCTGATATCTATGAGTATCTTCGT 418
Query 401 GAACTGGAGGTGAAGCCAAAGCAAAGACCTTTACCTGATTATATTGAAAAAGTTCAAAAA 460
|||| ||||||||||||||||| ||||||||||| ||||| || || |||||||| |||
Sbjct 419 CAACTTGAGGTGAAGCCAAAGCAGAGACCTTTACCAGATTACATAGAGAAAGTTCAGAAA 478
Query 461 GATGTAACACCAAGTATGAGAGGTGTTTTGGTTGATTGGTTAGTGGAAGTTGCTGAAGAG 520
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 479 GATGTAACACCAAGTATGAGAGGTGTTTTGGTTGATTGGTTAGTGGAAGTTGCTGAAGAG 538
Query 521 TATAAACTTGGATCTGAAACACTTTATCTCACTGTCTCACATATTGATAGATTCTTGTCT 580
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TATAAACTTGGATCTGAAACACTTTATCTCACTGTCTCACATATTGATAGATTCTTGTCT 598
Query 581 TTGAAGACTGTTAACAAGCAAAGGCTTCAGCTTGTGGGAGTTTCTGCTATGCTTATCGCT 640
|| ||||||||||||||||||| ||| |||||||| |||||||||||||||||||| |||
Sbjct 599 TTAAAGACTGTTAACAAGCAAAAGCTACAGCTTGTTGGAGTTTCTGCTATGCTTATTGCT 658
Query 641 TCGAAGTATGAAGAGATAAGTCCTCCTAAAGTGGAAGATTTTTGTTATATTACGGATAAT 700
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 659 TCGAAGTATGAAGAGATAAGTCCTCCTAAAGTGGATGATTTTTGTTACATTACGGATAAT 718
Query 701 ACGTTTACGAAGCAAGATGTGGTGAAGATGGAAGCGGATATACTTCTCGCGCTTCAGTTT 760
|||||| |||| |||||||| |||||||||||||| ||||||||||| || |||||||||
Sbjct 719 ACGTTTTCGAAACAAGATGTTGTGAAGATGGAAGCTGATATACTTCTTGCTCTTCAGTTT 778
Query 761 GAGTTAGGAAGGCCAACTATCAATACTTTTATGAGACGGTTCACAAGAGTTGCACAAGAA 820
||||| ||||| ||||| || |||||||||||||||||||| || ||||||||||||||
Sbjct 779 GAGTTGGGAAGACCAACGATTAATACTTTTATGAGACGGTTTACTAGAGTTGCACAAGAC 838
Query 821 GATTTCAAAGTGCCACATTTGCAGCTAGAGCCTCTTTGTTGCTATTTATCAGAATTGAGT 880
||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 839 GATTTCAAAGTTCCACATTTGCAGCTAGAGCCTCTTTGTTGCTATTTGTCAGAATTGAGT 898
Query 881 ATATTAGATTACAAAACTGTGAAGTTTGTGCCGTCTCTGTTGGCTGCTTCTGCTGTTTTT 940
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 899 ATATTAGATTATAAGACTGTGAAGTTTGTGCCGTCTCTGTTGGCTGCTTCTGCTGTTTTT 958
Query 941 CTTGCTCGGTTCATCATCCGTCCTAAACAACATCCTTGGAATCAGATGTTAGAAGAATAC 1000
|| |||||||||||||||||||| ||||||||||||||||| || ||||||||||| |||
Sbjct 959 CTCGCTCGGTTCATCATCCGTCCGAAACAACATCCTTGGAACCAAATGTTAGAAGAGTAC 1018
Query 1001 ACAAAGTATAAAGCGGCTGATCTACAAGTGTGCGTTGGAATCATACATGACTTGTATCTA 1060
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 1019 ACAAAGTACAAAGCGGCTGATCTACAAGTGTGTGTTGGAATCATACATGACTTGTATTTG 1078
Query 1061 AGCAGAAGAGGAGGTGCTCTACAAGCTGTTAGAGAGAAATACAAGCACCATAAGTTCCAA 1120
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 1079 AGCAGAAGAGGAGGTGCTTTACAAGCTGTTAGAGAGAAATATAAGCACCATAAGTTCCAA 1138
Query 1121 TGCGTTGCCACCATGCCTGTTTCACCAGAGCTGCCGGTTACCTTTTGGGAGGATGTTACC 1180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1139 TGCGTTGCGACCATGCCTGTTTCACCAGAGCTGCCGGTTACCTTTTGGGAGGATGTTACC 1198
Query 1181 ATTTGATCTGAGGTTATGCTATCTTTGGCAAATGTTACAGAGCTCGATTACCGAATCTTG 1240
||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 1199 ATTTGATCTGAGGTTATGCTATCTTAAGCAAATGTTACGGAGCTGGATTACCGAATCTTG 1258
Query 1241 TGTCAAATAGTATAAGGGACACAGATCAACAAGTCAAGCTAGAAGAGTAAGAACTATAGT 1300
| ||||||||||||| ||||||||||| ||||| |||||||||||||||||| |||||
Sbjct 1259 TTTCAAATAGTATAATGGACACAGATCTTCAAGTGAAGCTAGAAGAGTAAGAAATATAGA 1318
Query 1301 AGTGAAGGCAGGAGCAGATAAGTTTGTGTTATGTGAAGATGTGTGATGTGTTATTGAAAT 1360
|||||||||||||||| |||||| || |||||||||||||||||||||| ||||||||||
Sbjct 1319 AGTGAAGGCAGGAGCAAATAAGTCTGCGTTATGTGAAGATGTGTGATGTATTATTGAAAT 1378
Query 1361 CTCAT-TTTGTT-T--ACAAAATT--AGTGTGTAACCCCGAATAATATAATTTTATACAA 1414
||| | ||| || | |||||||| |||||| || | |||||||||||||||||||||
Sbjct 1379 CTCTTCTTTTTTATTTACAAAATTTTAGTGTGAAATTCGGAATAATATAATTTTATACAA 1438
Query 1415 TTATGAATTATGCAATATGATATAAGTATTTTTGTGATATGATCTTATTTTGTT 1468
||||| ||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 1439 TTATG-------CAATATGATATAAGTATTTATGTGACATGATCTTATTTTGTT 1485
> AT1G47220.1 | Symbols: CYCA3;3 | Cyclin A3;3 | chr1:17303676-17305197
FORWARD LENGTH=984
Length=984
Score = 950 bits (514), Expect = 0.0
Identities = 759/875 (87%), Gaps = 25/875 (3%)
Strand=Plus/Plus
Query 326 TCTGACATTGATTCTCGATCTCATGATCCTCAAATGTGTGGACCTTATGTCAGAGACATC 385
||||||||||| || | ||| ||||||| || |||||||||| ||||||| ||| |||
Sbjct 121 TCTGACATTGACGCTAGGTCTGATGATCCACAGATGTGTGGACTTTATGTCTCAGATATC 180
Query 386 TACGAGTATCTTCGTGAACTGGAGGTGAAGCCAAAGCAAAGACCTTTACCTGATTATATT 445
||||||||||| |||||| | |||||||||||||||| ||||||||||| |||||| |||
Sbjct 181 TACGAGTATCTCCGTGAATTAGAGGTGAAGCCAAAGCTAAGACCTTTACATGATTACATT 240
Query 446 GAAAAAG-TTCAAAAAGATGTAACACCAAGTATGAGAGGTGTTTTGGTTGATTGGTTAGT 504
| ||||| ||||| ||||| |||||||||| | ||||||||||||||| |||||||||||
Sbjct 241 G-AAAAGATTCAAGAAGATATAACACCAAGCAAGAGAGGTGTTTTGGTAGATTGGTTAGT 299
Query 505 GGAAGTTGCTGAAGAGTATA-AACTTG-GATCTGAAACACTTTATCTCACTGTCTCACAT 562
||||||||||||||||| | |||| | | ||||||||||| |||||||||||||| |
Sbjct 300 GGAAGTTGCTGAAGAGT-TCGAACTCGTG-TCTGAAACACTCTATCTCACTGTCTCTTAC 357
Query 563 ATTGATAGATTCTTGTCTTTGAAGACTG-TTAACAAGCAAAGGCTTCAGCTTGTGGGAGT 621
||||||||||||||||| || |||| || ||||| |||| |||||||||||||||||||
Sbjct 358 ATTGATAGATTCTTGTCATTAAAGA-TGGTTAACGAGCACTGGCTTCAGCTTGTGGGAGT 416
Query 622 TTCTGCTATGCTTATCGCTTCGAAGTATGAAGAGATAA-GTC-CTCCTAAAGTGGAAGAT 679
|||||| ||| |||||||||||||||||||||||| || ||| | ||||||||||| |||
Sbjct 417 TTCTGCAATGTTTATCGCTTCGAAGTATGAAGAGA-AACGTCGC-CCTAAAGTGGAGGAT 474
Query 680 TTTTGTTATATTACGGATAATACGTT-TACGAAGCAAGATGTGGTGAAGATGGAAGCGGA 738
|||||||| ||||||| |||||| || |||||| ||||||||| |||||||||||| |||
Sbjct 475 TTTTGTTACATTACGGCTAATAC-TTATACGAAACAAGATGTGTTGAAGATGGAAGAGGA 533
Query 739 TATACTTCTCGCGCTTCAGTTTGAGTTAGGAAGGCCAACTATCAA-TACTTTTATGAGAC 797
|||||||||||||||| ||||||| |||||||||| || | ||| ||||||| | ||||
Sbjct 534 TATACTTCTCGCGCTTGAGTTTGAACTAGGAAGGCCTACGA-CAAATACTTTTCTAAGAC 592
Query 798 GGTTCACAAGAGTTGCACAAGAAGATTTCAAAGTGCCACATTTGCAGCTAGAGCCTCTTT 857
|||||| ||| ||||||||||||||||||||||||||| | |||||||||||||||||||
Sbjct 593 GGTTCATAAGGGTTGCACAAGAAGATTTCAAAGTGCCAAACTTGCAGCTAGAGCCTCTTT 652
Query 858 GTTGCTATTTATCAGAATTGAGTATATTAGATTACAAAACTGTGAAGTTTGTGCCGTCTC 917
|||||||| | |||||| | ||||| |||||||| | |||||||||||| || |||
Sbjct 653 GTTGCTATCTGTCAGAACTAAGTATGTTAGATTATAGTTGTGTGAAGTTTGTTCCATCTT 712
Query 918 TGTTGGCTGCTTCTGCTGTTTTTCTTGCTCGGTTCATCATCCGTCCTAAACAACATCCTT 977
||||||||||||||||||| ||||| ||||| |||||||||| |||||| ||||||||||
Sbjct 713 TGTTGGCTGCTTCTGCTGTCTTTCTCGCTCGATTCATCATCCTTCCTAACCAACATCCTT 772
Query 978 GGAATCAGATGTTAGAAGAATACACAAAGTATAAAGCGGCTGATCTACAAGTGTGCGTTG 1037
||| ||| ||||| ||||||| ||||||||| ||||||||||||||||||||||| || |
Sbjct 773 GGAGTCAAATGTTGGAAGAATGCACAAAGTACAAAGCGGCTGATCTACAAGTGTGTGT-G 831
Query 1038 GA-ATCATACATGACTTGTATCTAAGCAGAAGAGGAGGTGCT-CTACAAGCTGTTAGAGA 1095
|| ||||| | ||||||||| || |||||||| | ||||||| | | |||||||||||||
Sbjct 832 GAGATCATGCTTGACTTGTACCTGAGCAGAAGTGAAGGTGCTTCAA-AAGCTGTTAGAGA 890
Query 1096 GAAATACAAGCACCATAAGTTCCAATGCGTTGCCACCATGCCTGTTTCACCA-GAGCTGC 1154
|||||||||||| ||||||||||||| |||||| | || ||||| | |||| ||||| |
Sbjct 891 GAAATACAAGCAACATAAGTTCCAATACGTTGCGGCAATTCCTGTCT-ACCAAGAGCTTC 949
Query 1155 CGGTTACCTTTTGGGAGGATGTT---ACCATTTGA 1186
||||||||||||||||||||||| |||||||||
Sbjct 950 CGGTTACCTTTTGGGAGGATGTTGTTACCATTTGA 984
> AT1G47230.2 | Symbols: CYCA3;4 | CYCLIN A3;4 | chr1:17306577-17308848
FORWARD LENGTH=1549
Length=1549
Score = 797 bits (431), Expect = 0.0
Identities = 912/1136 (80%), Gaps = 66/1136 (6%)
Strand=Plus/Plus
Query 78 CCATGACGGAGCAA-GAGATCTGCGTGAGGGTTACGAGAGCGGCGGCGAAGA-GAAAA-- 133
||||| ||||| || ||| ||| | |||| | ||||||||||||||||| | |||||
Sbjct 174 CCATGGCGGAG-AATCAGAACTGTGCGAGGATGACGAGAGCGGCGGCGAA-ACGAAAAGC 231
Query 134 G-CG---ATGG-GTATTGACGAAGATCGTGTCAGCAAGAAGAGAGTTGTTCTTGGTGAGC 188
| || |||| || | |||||| | | || || ||||||||||||||||| || ||||
Sbjct 232 GTCGTCCATGGCGT-TAGACGAAAACCCAGTTAGTAAGAAGAGAGTTGTTCTCGGAGAGC 290
Query 189 TTCTTAATGTCTCCAATGTCAAAGTTTTAGCTAAT-CTCAATC-AGAAGAGAGAAACCCA 246
||| ||| | ||||||||| | || ||| | | ||||| |||| ||||| ||||
Sbjct 291 TTCCGAATATGTCCAATGTC---G--TT-GCT-GTACCCAATCAAGAA-AGAGAGACCCT 342
Query 247 GAA-GCCAAAAAAGAGTCTTAGACCT-CCTCCGGCGAAACAGCTTAAGACA-GCTCCGGT 303
|| || |||| | ||| ||| | | ||| || || ||| | |||| | ||| | |
Sbjct 343 TAAGGCTAAAACA-AGTGTTA-A--TACCT-CGAAGAGGCAGATGAAGA-AGGCTTTGAT 396
Query 304 GGTTATTG-ACCTAGATTCAGAATCTGACATTGATTCTCGATCTCATGATCCTCAAATGT 362
| || || | |||| | | | || | || || || ||||| ||||||||| ||||
Sbjct 397 GATTCCTGAAGCTAG---C-GTA-CT-A-ATCGAATCGAGATCTGTTGATCCTCAGATGT 449
Query 363 GTGGA-CCTTATGTC-AGAGACATCTACGAGTATCTTCGTGAACTGGAGGTGAAGCC-AA 419
|| || |||| || | || || || | | ||||| |||||| |||||| |||||| ||
Sbjct 450 GT-GAGCCTTTTG-CTAGTGATATTTGTGCTTATCTCCGTGAAATGGAGGGGAAGCCGAA 507
Query 420 AGCAAAGACCTTTACCTGATTATATTGAAAAAGTTCAAAAAGATGTAACACCA-AGTATG 478
| || ||||| ||||||||||||||||||| ||||| | ||| |||| ||| | |||
Sbjct 508 A-CATAGACCACTACCTGATTATATTGAAAAGGTTCAGAGTGATTTAACTCCACA-CATG 565
Query 479 AGAG-GTGTTTTGGTTGATTGGTTAGTGGAAGTTGCTGAAGAGTATAAACTTGGATCTGA 537
|||| | |||||||| |||||||||||||| |||||||| ||||| || |||| || ||
Sbjct 566 AGAGCG-GTTTTGGTGGATTGGTTAGTGGAGGTTGCTGAGGAGTACAAGCTTGTTTCGGA 624
Query 538 AACACTTTATCTCACTGTCTCAC-ATATTGATAGATTCTTGTCTTTGAAGACTGTTAACA 596
|| |||||||||||| |||| | || ||||||||||||||||| ||||| || ||||||
Sbjct 625 TACGCTTTATCTCACTATCTC-CTATGTTGATAGATTCTTGTCTGTGAAGCCTATTAACA 683
Query 597 AGCA-AAGGCTTCAGCTTGTGGGAGTTTCTGCTATGCTTA-T-CG-CTTCGAAGTATGAA 652
||| || |||||||||||||||||||||||| ||||||| | || || ||| ||||||
Sbjct 684 GGCAGAA-GCTTCAGCTTGTGGGAGTTTCTGCAATGCTTATTGCGTCTAGGAAATATGAA 742
Query 653 GAGATAAGTCCTCCTAAAGTGGAAGATTTTTGTTATATTACGGATAATACGTTTACGAAG 712
|||||| ||||||||||||| |||||||||||||| |||||||||||||| ||||| ||
Sbjct 743 GAGATAGGTCCTCCTAAAGTTGAAGATTTTTGTTACATTACGGATAATACATTTACTAAA 802
Query 713 CAAGATGTGGTGAAGATGGAAGCGGATATACTTCTCGCGCTTCAGTTTGAGTTAGGAAGG 772
||||| |||||| |||||| |||||||||||||| || || |||||||| ||||||||
Sbjct 803 CAAGAAGTGGTGTCGATGGAGGCGGATATACTTCTTGCTCTGCAGTTTGAATTAGGAAGC 862
Query 773 CCAACTATCAATACTTTTATGAGACGGTTCACAAGAGTTGCACAAGAAGATTTCAAAGTG 832
||||| ||||| || || | |||||||| ||| | ||||||||||||||||||||||
Sbjct 863 CCAACCATCAAAACATTCCTAAGACGGTTTACACGGGTTGCACAAGAAGATTTCAAAG-A 921
Query 833 C-CACATTTGCAGCTAGAGCCT-CTTTGTTGCTATTTATCAGAATTGAGTATATTAGATT 890
| |||| |||||| ||||| | |||||||||||| |||||||||||||||| |||||||
Sbjct 922 CTCACAATTGCAGATAGAG-TTCCTTTGTTGCTATCTATCAGAATTGAGTATGTTAGATT 980
Query 891 ACAAAACTGTGAAGT-TTGTGCCGTCTCTGTTGGCTGCTTCTGCTGTTTTTCTTGCTCGG 949
||| |||||||| || |||| ||||| ||| ||||||| ||||| |||||||| |||
Sbjct 981 ACACCTGTGTGAAGTATT-TGCCATCTCTTTTGTCTGCTTCAGCTGTATTTCTTGCCCGG 1039
Query 950 TTCATCATCCGTCCTAAACAACATCCTTGGAATCAGATGTTAGAAGAATACACAAAGTAT 1009
|||||||||||||| |||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 1040 TTCATCATCCGTCCAAAACAACATCCTTGGAATCAAATGCTAGAAGAATACACAAAGTAC 1099
Query 1010 AAAGCGGCTGATCTACAAGTGTGCGTTGGAATCATACATGACTTGTATCTAAGCAGAAGA 1069
||||| |||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 1100 AAAGCAGCTGATCTACAAGTGTGCGTGGGTATCATACATGACTTGTATCTAAGCAGAAGA 1159
Query 1070 GGAGGTGCTCTACAAGCTGTTAGAGAGAAATACAAGCACCATAAGTTCCAA-TGCGTTGC 1128
||| ||||| ||||||||||| | || |||||||| || |||| | || ||||||||
Sbjct 1160 GGAAACACTCTAGAAGCTGTTAGAAATAAGTACAAGCAACACAAGTAC-AAGTGCGTTGC 1218
Query 1129 CACCATGCCTGTTTCACCAGAGCTGCCGGTTACCTT-TTGGGAGGATGTTACCATT 1183
||||||||||||||||| ||||| || || | || || | || || ||||||||
Sbjct 1219 GACCATGCCTGTTTCACCGGAGCTACCTCTTGCTTTCTTTGAAG-ATATTACCATT 1273
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72389185890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5