BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473870
Length=981
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47220.1 | Symbols: CYCA3;3 | Cyclin A3;3 | chr1:17303676-17... 1447 0.0
AT1G47210.2 | Symbols: CYCA3;2 | cyclin-dependent protein kinas... 909 0.0
> AT1G47220.1 | Symbols: CYCA3;3 | Cyclin A3;3 | chr1:17303676-17305197
FORWARD LENGTH=984
Length=984
Score = 1447 bits (783), Expect = 0.0
Identities = 915/978 (94%), Gaps = 11/978 (1%)
Strand=Plus/Plus
Query 11 AGAAAAACAAACAGTTTCATGCCGACCAAAACCCTCAAGATGCTTCCCCGGCAGAGTGGG 70
||||| | |||||| ||||| ||||||| |||||||||||||||||||||| ||||||||
Sbjct 11 AGAAAGATAAACAGATTCATTCCGACCATAACCCTCAAGATGCTTCCCCGGTAGAGTGGG 70
Query 71 CGGAGATTCGACATAGGCTACTTGCGATGCAAGAGAACATTCAATCAGGCTCTGACATTG 130
|||| |||||||||| |||||||||| | |||||||||||||||||||||||||||||||
Sbjct 71 CGGAAATTCGACATAAGCTACTTGCGTTTCAAGAGAACATTCAATCAGGCTCTGACATTG 130
Query 131 ACGCTAGATCTGATGATCCACAGATGTGTGGACTTTATGTCTCAGATATCTACGAGTATC 190
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 131 ACGCTAGGTCTGATGATCCACAGATGTGTGGACTTTATGTCTCAGATATCTACGAGTATC 190
Query 191 TCCGTGAATTAGAGGTGAAGCCAAAGCTAAGACCTTTAGATGATTATATGGAAAAGGTTC 250
|||||||||||||||||||||||||||||||||||||| ||||||| || |||||| |||
Sbjct 191 TCCGTGAATTAGAGGTGAAGCCAAAGCTAAGACCTTTACATGATTACATTGAAAAGATTC 250
Query 251 AAGAAGA-AGTAACACCAAGCTCGAGAGGTGTTTTAGTAGATTGGTTAGTGGAAGTTGCT 309
||||||| | ||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 251 AAGAAGATA-TAACACCAAGCAAGAGAGGTGTTTTGGTAGATTGGTTAGTGGAAGTTGCT 309
Query 310 GAAGAGTTCGAACTCGGGTCTGAAACAATCTATCTCACTGTCTCTTACATCGATAGATTC 369
|||||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||
Sbjct 310 GAAGAGTTCGAACTCGTGTCTGAAACACTCTATCTCACTGTCTCTTACATTGATAGATTC 369
Query 370 TTGTCCTCAAAGACTG-TCAACGAGCAAAAACTTCAGCTTGTAGGAGTTTCTGCAATGTT 428
||||| | ||||| || | |||||||| ||||||||||| |||||||||||||||||
Sbjct 370 TTGTCATTAAAGA-TGGTTAACGAGCACTGGCTTCAGCTTGTGGGAGTTTCTGCAATGTT 428
Query 429 TATTGCTTCGAAGTATGAAGAGAAACGTCGTCCTAAAGTGGAGGATTTTTGTTACATTAC 488
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 429 TATCGCTTCGAAGTATGAAGAGAAACGTCGCCCTAAAGTGGAGGATTTTTGTTACATTAC 488
Query 489 GGCTAATACATATACGAAACAAGATGTGTTGAAGATGGAAGAGGAAATACTTTTCGCGCT 548
||||||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 489 GGCTAATACTTATACGAAACAAGATGTGTTGAAGATGGAAGAGGATATACTTCTCGCGCT 548
Query 549 TGAGTTTGAACTAGGAAGGCCTACGATCAA-TACTTTTCTAAGACGGTTCATAAGGGTTG 607
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 549 TGAGTTTGAACTAGGAAGGCCTACGA-CAAATACTTTTCTAAGACGGTTCATAAGGGTTG 607
Query 608 CACAAGAAGATTTCAAAGTGCCAAACTTGCAGCTAGAGCCTCTTTGTTGCTATTTATCAG 667
||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||
Sbjct 608 CACAAGAAGATTTCAAAGTGCCAAACTTGCAGCTAGAGCCTCTTTGTTGCTATCTGTCAG 667
Query 668 AACTAAGTATGTTAGATTATAGTTGTGTGAAGTTTGTTCCATCTTTGTTGGCTGCTTCTG 727
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 668 AACTAAGTATGTTAGATTATAGTTGTGTGAAGTTTGTTCCATCTTTGTTGGCTGCTTCTG 727
Query 728 CTGTCTTTCTCGCTCAATTCATCATCCGTCCCAAACAACATCCTTGGAGTCAAATGTTAG 787
||||||||||||||| ||||||||||| ||| || ||||||||||||||||||||||| |
Sbjct 728 CTGTCTTTCTCGCTCGATTCATCATCCTTCCTAACCAACATCCTTGGAGTCAAATGTTGG 787
Query 788 AAGAATACACAAAGTACAAAGCATCTGATCTACAAGTGTGTGTGG-GAATCATGCATGAC 846
|||||| ||||||||||||||| ||||||||||||||||||||| || |||||| ||||
Sbjct 788 AAGAATGCACAAAGTACAAAGCGGCTGATCTACAAGTGTGTGTGGAGA-TCATGCTTGAC 846
Query 847 TTGTATCTGAGCAGAAGTGAAGGTGCTTCAAAAGCTGTTAGAAAGAAATACACGCAACAT 906
||||| |||||||||||||||||||||||||||||||||||| ||||||||| |||||||
Sbjct 847 TTGTACCTGAGCAGAAGTGAAGGTGCTTCAAAAGCTGTTAGAGAGAAATACAAGCAACAT 906
Query 907 AAGTTCCAATACGTTGCCACAATTCCTGTCTACCAAGAGCTGCCGGATACCTTTTGGGAG 966
||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||
Sbjct 907 AAGTTCCAATACGTTGCGGCAATTCCTGTCTACCAAGAGCTTCCGGTTACCTTTTGGGAG 966
Query 967 GATGTT---ACCATTTGA 981
|||||| |||||||||
Sbjct 967 GATGTTGTTACCATTTGA 984
> AT1G47210.2 | Symbols: CYCA3;2 | cyclin-dependent protein kinase
3;2 | chr1:17300951-17302866 FORWARD LENGTH=1486
Length=1486
Score = 909 bits (492), Expect = 0.0
Identities = 752/875 (86%), Gaps = 28/875 (3%)
Strand=Plus/Plus
Query 121 TCTGACATTGACGCTAGATCTGATGATCCACAGATGTGTGGACTTTATGTCT-CAGATAT 179
||||||||||| || ||||||||||||| || |||||||||| |||||| | | |||||
Sbjct 344 TCTGACATTGATTCTCGATCTGATGATCCTCAAATGTGTGGACCTTATGT-TGCTGATAT 402
Query 180 CTACGAGTATCTCCGTGAA-TTAGAGGTGAAGCCAAAGCTA-AGACCTTTA-GATGATTA 236
||| |||||||| ||| || || |||||||||||||||| | ||||||||| | |||||
Sbjct 403 CTATGAGTATCTTCGTCAACTT-GAGGTGAAGCCAAAGC-AGAGACCTTTACCA-GATTA 459
Query 237 TATGGA-AAAGGTTCAAG-AAGAAGTAACACCAAGCT-CGAGAGGTGTTTTAGTAGATTG 293
|| || ||| |||| || |||| ||||||||||| | |||||||||||| || |||||
Sbjct 460 CATAGAGAAA-GTTC-AGAAAGATGTAACACCAAG-TATGAGAGGTGTTTTGGTTGATTG 516
Query 294 GTTAGTGGAAGTTGCTGAAGAGT-TCGAACTCGGGTCTGAAACAATCTATCTCACTGTCT 352
||||||||||||||||||||||| | |||| || ||||||||| | |||||||||||||
Sbjct 517 GTTAGTGGAAGTTGCTGAAGAGTATA-AACTTGGATCTGAAACACTTTATCTCACTGTCT 575
Query 353 CTTACATCGATAGATTCTTGTCCTCAAAGACTGTCAACGAGCAAAAACTTCAGCTTGTAG 412
| | || |||||||||||||| | ||||||||| ||| ||||||| || |||||||| |
Sbjct 576 CACATATTGATAGATTCTTGTCTTTAAAGACTGTTAACAAGCAAAAGCTACAGCTTGTTG 635
Query 413 GAGTTTCTGCAATGTTTATTGCTTCGAAGTATGAAGAGA-AACGTCGTCCTAAAGTGGAG 471
|||||||||| ||| |||||||||||||||||||||||| || ||| ||||||||||||
Sbjct 636 GAGTTTCTGCTATGCTTATTGCTTCGAAGTATGAAGAGATAA-GTCCTCCTAAAGTGGAT 694
Query 472 GATTTTTGTTACATTACGGCTAATACATATACGAAACAAGATGT-GTTGAAGATGGAAGA 530
||||||||||||||||||| |||||| | | ||||||||||||| || |||||||||||
Sbjct 695 GATTTTTGTTACATTACGGATAATACGTTTTCGAAACAAGATGTTGT-GAAGATGGAAGC 753
Query 531 GGAAATACTT-TTCGCGCTTGAGTTTGAACTAGGAAGGCCTACGATCAATACTTTTCTAA 589
|| |||||| || || ||| ||||||| | ||||| || ||||| ||||||||| | |
Sbjct 754 TGATATACTTCTT-GCTCTTCAGTTTGAGTTGGGAAGACCAACGATTAATACTTTTATGA 812
Query 590 GACGGTTCA-TAAGGGTTGCACAAGAAGATTTCAAAGTGCCAAACTTGCAGCTAGAGCCT 648
||||||| | || | ||||||||||| ||||||||||| ||| | |||||||||||||||
Sbjct 813 GACGGTTTACTA-GAGTTGCACAAGACGATTTCAAAGTTCCACATTTGCAGCTAGAGCCT 871
Query 649 CTTTGTTGCTATTTATCAGAACTAAGTATGTTAGATTATA-GTTGTGTGAAGTTTGTTCC 707
|||||||||||||| |||||| | ||||| |||||||||| | |||||||||||| ||
Sbjct 872 CTTTGTTGCTATTTGTCAGAATTGAGTATATTAGATTATAAGAC-TGTGAAGTTTGTGCC 930
Query 708 ATCTTTGTTGGCTGCTTCTGCTGTCTTTCTCGCTCAATTCATCATCCGTCCCAAACAACA 767
||| ||||||||||||||||||| |||||||||| |||||||||||||| ||||||||
Sbjct 931 GTCTCTGTTGGCTGCTTCTGCTGTTTTTCTCGCTCGGTTCATCATCCGTCCGAAACAACA 990
Query 768 TCCTTGGAGTCAAATGTTAGAAGAATACACAAAGTACAAAGCATCTGATCTACAAGTGTG 827
|||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 991 TCCTTGGAACCAAATGTTAGAAGAGTACACAAAGTACAAAGCGGCTGATCTACAAGTGTG 1050
Query 828 TGTGGGAATCATGCATGACTTGTATCTGAGCAGAAGTGAAGGTGCTTCAAAAGCTGTTAG 887
||| |||||||| |||||||||||| |||||||||| | |||||||| | ||||||||||
Sbjct 1051 TGTTGGAATCATACATGACTTGTATTTGAGCAGAAGAGGAGGTGCTTTACAAGCTGTTAG 1110
Query 888 AAAGAAATACACGCAACATAAGTTCCAATACGTTGCCACAATTCCTGTCT-ACCAAGAGC 946
| ||||||| | ||| ||||||||||||| |||||| || || ||||| | |||| ||||
Sbjct 1111 AGAGAAATATAAGCACCATAAGTTCCAATGCGTTGCGACCATGCCTGTTTCACCA-GAGC 1169
Query 947 TGCCGGATACCTTTTGGGAGGATGTTACCATTTGA 981
|||||| ||||||||||||||||||||||||||||
Sbjct 1170 TGCCGGTTACCTTTTGGGAGGATGTTACCATTTGA 1204
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48023844532
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5