BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473872
Length=1544
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47230.2 | Symbols: CYCA3;4 | CYCLIN A3;4 | chr1:17306577-17... 2098 0.0
> AT1G47230.2 | Symbols: CYCA3;4 | CYCLIN A3;4 | chr1:17306577-17308848
FORWARD LENGTH=1549
Length=1549
Score = 2098 bits (1136), Expect = 0.0
Identities = 1437/1573 (91%), Gaps = 58/1573 (4%)
Strand=Plus/Plus
Query 1 TCAAATCCCTAAAAA-TTCGAAATC-G-AAATTTACACAGAGAAGCGCCATGACCT-AAA 56
||||||||||||||| ||||||||| | |||||||||||||||||||||||||||| |||
Sbjct 6 TCAAATCCCTAAAAATTTCGAAATCGGAAAATTTACACAGAGAAGCGCCATGACCTAAAA 65
Query 57 ATCTCAAAACTTCCCCATCAAAAATGGCGCTTTTACTCTACCCATTTCCTCTTACCTTCC 116
||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||| ||
Sbjct 66 ATCTCAAAACTTCCCCAACAAAAATGGCGCTTTTACTCAACCCATTTCCTTTTACCTACC 125
Query 117 TTCTACATTACCCCTTTCCTCAAATCTCTCTTTCCCATTGAAA-AAACCCATGTCGGAGA 175
|| |||||||||||||| |||||||||| |||||||| ||||| || |||||| ||||||
Sbjct 126 TTGTACATTACCCCTTTTCTCAAATCTCACTTTCCCACTGAAATAACCCCATGGCGGAGA 185
Query 176 ATCAGAACTGCGCGAGGATGACGAGAGCGGCGGCGAAACGAAAAGCGTCGTCTATGGCGG 235
|||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 186 ATCAGAACTGTGCGAGGATGACGAGAGCGGCGGCGAAACGAAAAGCGTCGTCCATGGCGT 245
Query 236 TGGATGAAAACCCAGTTAGTAAAAAGAGAGTTGTGCTCGGAGAGCTTCCGAATATGTCCA 295
| || ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||
Sbjct 246 TAGACGAAAACCCAGTTAGTAAGAAGAGAGTTGTTCTCGGAGAGCTTCCGAATATGTCCA 305
Query 296 ATGTCGTAGCTGTTCCGGTGAAACCCAATCAAGAAAGAGAGGCCCTTAAGGCTAAATCAA 355
||||||| || | || ||||||||||||||||||| |||||||||||||| |||
Sbjct 306 ATGTCGT---TG---C--TG-TACCCAATCAAGAAAGAGAGACCCTTAAGGCTAAAACAA 356
Query 356 GTGCTAATACCTCGAAGAAGCAGATGAAGAAGGCTTTGATGATTCCTGAACCTAGCGTAG 415
||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 357 GTGTTAATACCTCGAAGAGGCAGATGAAGAAGGCTTTGATGATTCCTGAAGCTAGCGTA- 415
Query 416 AT-ATTGAATCGAGATCTGTTGATCCTCAGATGTGTGAGCCTTTTGCTAGTGATATTTGT 474
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 416 CTAATCGAATCGAGATCTGTTGATCCTCAGATGTGTGAGCCTTTTGCTAGTGATATTTGT 475
Query 475 GCTTATCTTCGTGAAATGGAGGGGAAGGCGAAACATAGACCATTACCGGATTATATTGAA 534
|||||||| |||||||||||||||||| |||||||||||||| |||| ||||||||||||
Sbjct 476 GCTTATCTCCGTGAAATGGAGGGGAAGCCGAAACATAGACCACTACCTGATTATATTGAA 535
Query 535 AAGGTTCAGAGTGATTTAACGCCTCACATGAGAGCGGTTTTGGTGGATTGGTTAGTGGAA 594
|||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 536 AAGGTTCAGAGTGATTTAACTCCACACATGAGAGCGGTTTTGGTGGATTGGTTAGTGGAG 595
Query 595 GTTGCTGAGGAGTACAAACTTGTCTCGGATACTCTCTATCTCACTGTCTCCTATGTGGAT 654
||||||||||||||||| ||||| |||||||| || ||||||||| |||||||||| |||
Sbjct 596 GTTGCTGAGGAGTACAAGCTTGTTTCGGATACGCTTTATCTCACTATCTCCTATGTTGAT 655
Query 655 AGATTCTTGTCTGTGAAGCCTATTAACAGGCAGAAGCTTCAGCTTGTGGGAGTTTCTGCG 714
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 AGATTCTTGTCTGTGAAGCCTATTAACAGGCAGAAGCTTCAGCTTGTGGGAGTTTCTGCA 715
Query 715 ATGCTTATTGCGTCTAGGAAATATGAAGAGATAGGTCCTCCTAAAGTGGAAGATTTTTGT 774
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 716 ATGCTTATTGCGTCTAGGAAATATGAAGAGATAGGTCCTCCTAAAGTTGAAGATTTTTGT 775
Query 775 TACATCACGGATAATACATTCACAAAACAAGAAGTGGTGTCGATGGAGGCGGATATACTT 834
||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 776 TACATTACGGATAATACATTTACTAAACAAGAAGTGGTGTCGATGGAGGCGGATATACTT 835
Query 835 CTTGCTTTGCAGTTTGAACTAGGAAGTCCAACCATCAAAACATTCCTAAGACGGTTTACA 894
|||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 836 CTTGCTCTGCAGTTTGAATTAGGAAGCCCAACCATCAAAACATTCCTAAGACGGTTTACA 895
Query 895 CGGGTTGCACAAGAAGATTTCAAAGACTCACTATTGCAGATAGAGTTCCTATGTTGCTAT 954
||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 896 CGGGTTGCACAAGAAGATTTCAAAGACTCACAATTGCAGATAGAGTTCCTTTGTTGCTAT 955
Query 955 CTATCAGAATTGAGTATGTTAGATTACACCTGTGTGAAGTATTTGCCTTCTCTTTTAG-C 1013
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 956 CTATCAGAATTGAGTATGTTAGATTACACCTGTGTGAAGTATTTGCCATCTCTTTT-GTC 1014
Query 1014 TGCTTCTGCTGTATTTCTTGCCCGATTCATCATCCGTCCAAAACAACATCCTTGGAATCA 1073
|||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1015 TGCTTCAGCTGTATTTCTTGCCCGGTTCATCATCCGTCCAAAACAACATCCTTGGAATCA 1074
Query 1074 AATGTTAGAAGAATACACAAAGTACAAAGCATCTGATCTACAAGTATGCGTGGGAATCGT 1133
|||| |||||||||||||||||||||||||| ||||||||||||| |||||||| ||| |
Sbjct 1075 AATGCTAGAAGAATACACAAAGTACAAAGCAGCTGATCTACAAGTGTGCGTGGGTATCAT 1134
Query 1134 ACATGACTTGTATCTAAGCAGAAGAGGAAACACTCTAGAAGCTGTTAGAAATAAATACAA 1193
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1135 ACATGACTTGTATCTAAGCAGAAGAGGAAACACTCTAGAAGCTGTTAGAAATAAGTACAA 1194
Query 1194 GCAACATAAGTACAAGTGCGTTGCGACCATGCCTGTTTCACCGGAGCTGCCTCTTGCTTT 1253
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1195 GCAACACAAGTACAAGTGCGTTGCGACCATGCCTGTTTCACCGGAGCTACCTCTTGCTTT 1254
Query 1254 CTTTGAAGATATTACCATTAGAGGAACGGCGTAAAAGAAGCTCAAAGCTTATGTGTTGGA 1313
|||||||||||||||||||||||||| ||||||||||||||| |||||||||| |||||
Sbjct 1255 CTTTGAAGATATTACCATTAGAGGAATGGCGTAAAAGAAGCTTGAAGCTTATGTATTGGA 1314
Query 1314 AATGTTAGTTGCCTGAATTTTGGGTTGTATATATCTCAATCTGTTATTAGAATGGCAGAT 1373
| |||||||| ||||||||||||||||||||||||| |||| |||||||||||
Sbjct 1315 AGTGTTAGTTACCTGAATTTTGGGTTGTATATATCT------GTTA---GAATGGCAGAT 1365
Query 1374 TAGTATTGAG-A--ATCTCTTTTA---T-T-TT---TG-------CTAACATTAGTTAAG 1415
|||||||||| | |||||||||| | | || || |||||| ||||||||
Sbjct 1366 TAGTATTGAGTATTATCTCTTTTAGCGTATGTTCAATGATTTTTGCTAACACTAGTTAAG 1425
Query 1416 AAACTTCTCCTTTT--GCTTGGCCATTATTTCAATGGTT-ATTAGCTTAA-ATTGATTTG 1471
|||||| | |||| ||||| ||||| ||||||||||| ||||| || |||||||||
Sbjct 1426 AAACTTTTTTTTTTTTGCTTGACCATTTTTTCAATGGTTTATTAGATTTTTATTGATTTG 1485
Query 1472 TTTTCTGCTTTTATTATATGACGTAATCATGTAAAAGCCTCTTTCAATTATATTGAAATG 1531
|||||||||||| || ||||| | |||||||||||||| ||| |||||| ||||
Sbjct 1486 TTTTCTGCTTTT-TTCTATGA--T------GTAAAAGCCTCTTTAAATCATATTGGAATG 1536
Query 1532 TGCACATCCTCTT 1544
|||||||||||||
Sbjct 1537 TGCACATCCTCTT 1549
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 76204427310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5