BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473874
Length=993
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47250.1 | Symbols: PAF2 | 20S proteasome alpha subunit F2 |... 1432 0.0
AT5G42790.1 | Symbols: PAF1, ATPSM30, ARS5 | proteasome alpha s... 817 0.0
> AT1G47250.1 | Symbols: PAF2 | 20S proteasome alpha subunit F2
| chr1:17319177-17321074 FORWARD LENGTH=1051
Length=1051
Score = 1432 bits (775), Expect = 0.0
Identities = 868/913 (95%), Gaps = 6/913 (1%)
Strand=Plus/Plus
Query 21 AAAGATGTTCAGGAACCAGTACGACACAGATGTGACTACAT-G-GTCACCAACAGGTCGA 78
|||||||||||||||||||||||||||||||||||| |||| | ||| || |||||||||
Sbjct 40 AAAGATGTTCAGGAACCAGTACGACACAGATGTGACAACATGGAGTC-CC-ACAGGTCGA 97
Query 79 CTATTCCAAGTCGAATACGCCATGGAAGCTGTGAAGCAAGGCTCAGCCGCAATCGGACTT 138
||||||||||||||||||||||||||||||||||| |||||||| || ||||| |||||
Sbjct 98 CTATTCCAAGTCGAATACGCCATGGAAGCTGTGAAACAAGGCTCCGCAGCAATAGGACTC 157
Query 139 AGATCTCGCTCACATGTCGTCCTCGCTTGTGTCAACAAAGCACAATCAGAGCTCTCTTCT 198
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 158 AGATCTCGCTCTCATGTCGTCCTCGCTTGTGTCAACAAAGCACAATCAGAGCTCTCTTCT 217
Query 199 CATCAAAGAAAGATCTTTAAAGTCGATGATCATATTGGTGTTGCTATTGCTGGTCTAACT 258
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 218 CATCAAAGGAAGATCTTTAAAGTCGATGATCATATTGGTGTTGCTATTGCTGGTCTCACT 277
Query 259 GCTGATGGTCGTGTTCTGTCTCGTTATATGAGATCTGAGTCTATTAATCACTCTTTTACT 318
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 278 GCTGATGGTCGTGTTCTCTCTCGATATATGAGATCTGAGTCTATTAATCACTCTTTTACT 337
Query 319 TATGAGTCTCCTCTTCCTGTTGGTCGTCTTGTTGTTCGTCTTGCTGATAAAGCTCAGGTA 378
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 338 TATGAGTCTCCTCTTCCTGTTGGTCGTCTTGTTGTTCATCTTGCTGATAAAGCTCAGGTA 397
Query 379 TGTACCCAACGTTCATGGAAAAGGCCTTATGGTGTTGGTTTGCTGGTAGGTGGATTGGAC 438
||||||||||| ||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 398 TGTACCCAACGATCATGGAAACGGCCTTATGGTGTGGGTTTGCTGGTAGGTGGATTGGAC 457
Query 439 GAGTCAGGAGCTCACCTCTACTACAACTGCCCTAGCGGAAACTACTTTGAATATCAAGCA 498
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 458 GAGTCAGGAGCTCACCTCTACTACAACTGCCCTAGCGGAAACTACTTTGAATATCAAGCA 517
Query 499 TTTGCTATTGGGTCTCGTTCACAAGCTGCGAAAACATATCTGGAACGCAGATTCGAGAGC 558
|| ||||| |||||||||||||||||||||||||| |||||||| |||| ||||||||||
Sbjct 518 TTCGCTATCGGGTCTCGTTCACAAGCTGCGAAAACCTATCTGGAGCGCAAATTCGAGAGC 577
Query 559 TTCCAAGAATCATCAAGAGAAGATCTGATCAAAGATGCTATTATGGCCATAAGGGAAACA 618
|||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||
Sbjct 578 TTCCAAGAATCATCAAAAGAAGATCTGATAAAAGATGCTATTATGGCCATAAGGGAAACT 637
Query 619 TTGCAAGGGGAAACACTGAAGAGCTCACTCTGCACTGTTTCTGTTCTAGGAGTCGATGAA 678
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 638 TTGCAAGGGGAAACACTGAAGAGCTCGCTCTGCACTGTTTCTGTTCTAGGAGTCGATGAA 697
Query 679 CCCTTCCATTTCTTGGACCAGGAAAGCATACAAAAGGTGATTGATACGTTTGAGAAGGTT 738
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 698 CCATTCCATTTCTTGGACCAGGAAAGCATTCAAAAGGTGATTGATACGTTTGAGAAGGTT 757
Query 739 CCCGAGGAAGAGGAGGATGCTGGTGAGGGTGAGGCCGAACCCGAAGCTGCTCCTGGTGCT 798
|| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 758 CCTGAGGAAGAGGAAGATGCTGGTGAGGGTGAGGCCGAACCCGAAGCTGCTCCTGGTGCT 817
Query 799 GCTGGAACTGGTGAACAAGGTGGTTCAGGTGATCAAGATGTTGCACCAATGGAAATTTGA 858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 818 GCTGGAACTGGTGAACAAGGTGGTTCAGGTGATCAAGATGTTGCACCAATGGAAATTTGA 877
Query 859 GCAAGTGGGAAT-ATGTTAAAAGTTGGGTTTTCAAATTAACTTGCTTGTGTTTAGCTCTT 917
||||| |||||| | ||| |||||||| ||||| || || || ||||||| ||||||||
Sbjct 878 GCAAGAGGGAATGA-GTTCAAAGTTGGATTTTCTAACCAATTTTCTTGTGTGTAGCTCTT 936
Query 918 TGGTCTGTTCCAA 930
|| | ||||||||
Sbjct 937 TGATATGTTCCAA 949
> AT5G42790.1 | Symbols: PAF1, ATPSM30, ARS5 | proteasome alpha
subunit F1 | chr5:17159044-17161070 REVERSE LENGTH=1158
Length=1158
Score = 817 bits (442), Expect = 0.0
Identities = 668/777 (86%), Gaps = 15/777 (2%)
Strand=Plus/Plus
Query 21 AAAGATGTTCAGGAACCAGTACGACACAGATGTGACTACATGGTCACCAACAGGTCGACT 80
|||||||||||| ||||| |||||||||||||| || |||||| ||||||||||| |
Sbjct 92 AAAGATGTTCAGAAACCAATACGACACAGATGTTACGACATGGAGTCCAACAGGTCGTTT 151
Query 81 ATTCCAAGTCGAATACGCCATGGAAGCTGTGAAGCAAGGCTCAGCCGCAATCGGACTTAG 140
||||||||| ||||||||||||||||| ||||||||||| || || ||||| ||||| ||
Sbjct 152 ATTCCAAGTGGAATACGCCATGGAAGCAGTGAAGCAAGGATCTGCAGCAATTGGACTCAG 211
Query 141 ATCTCGCTCACATGTCGTCCTCGCTTGTGTCAACAAAGCACAATCAGAGCTCTCTTCTCA 200
|||||| || |||||||| ||||||||||| |||||||| ||||| ||||| ||||| ||
Sbjct 212 ATCTCGTTCTCATGTCGTTCTCGCTTGTGTTAACAAAGCTCAATCGGAGCTTTCTTCGCA 271
Query 201 TCAAAGAAAGATCTTTAAAGTCGATGATCATATTGGTGTTGCTATTGCTGGTCTAACTGC 260
||| || |||||||||||||||||||| ||||| |||||||| || |||||||| || ||
Sbjct 272 TCAGAGGAAGATCTTTAAAGTCGATGACCATATCGGTGTTGCAATCGCTGGTCTCACAGC 331
Query 261 TGATGGTCGTGT-TCTGTCTCGTTATATGAGATCTGAGTCTATTAATCACTCTTTTACTT 319
|| |||||||| | ||||||| ||||||||||| || || |||||||||||||||||||
Sbjct 332 CGACGGTCGTGTAT-TGTCTCGGTATATGAGATCGGAATCGATTAATCACTCTTTTACTT 390
Query 320 ATGAGTCTCCTCTTCCTGTTGGTCGTCTTGTTGTTCGTCTTGCTGATAAAGCTCAGGTAT 379
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||| |
Sbjct 391 ATGAGTCTCCTCTTCCTGTTGGTCGTCTCGTTGTTCATCTTGCTGATAAAGCTCAGGTCT 450
Query 380 GTACCCAACGTTCATGGAAAAGGCCTTATGGTGTTGGTTTGCTGGTAGGTGGATTGGACG 439
|||||||||| ||||||||| | || |||||||||||||||||||||||||||||||| |
Sbjct 451 GTACCCAACGATCATGGAAACGACCCTATGGTGTTGGTTTGCTGGTAGGTGGATTGGATG 510
Query 440 AGTCAGGAGCTCACCTCTACTACAACTG-CCCTAGCGGAAACTACTTTGAATATCAAGCA 498
|||| ||||| ||||| ||||||||||| ||| |||||||||||||| || || |||||
Sbjct 511 AGTCTGGAGCCCACCTTTACTACAACTGTCCC-AGCGGAAACTACTTCGAGTACCAAGCT 569
Query 499 TTTGCTATTGGGTCTCGTTCACAAGCTGCGAAA-ACATATCTGGAACGCAGATTCGAGAG 557
||||||||||| || ||||| ||||| || ||| || |||||||||||||| || |||||
Sbjct 570 TTTGCTATTGGATCCCGTTCCCAAGCAGC-AAAGACCTATCTGGAACGCAGGTTTGAGAG 628
Query 558 CTTCCAAGAATCATCAAGAGAAGATCTGATCAAAGATGCTATTATGGCCATAAGGGAAAC 617
||| || || || ||||||||||||||||||||||||||| |||| | ||||| ||
Sbjct 629 CTTTGGGGATTCTTCTAGAGAAGATCTGATCAAAGATGCTATTTTGGCTGTTAGGGAGAC 688
Query 618 ATTGCAAGGGGAAACACTGAAGAGCTCACTCTGCACTGTTTCTGTTCTAGGAGTCGATGA 677
|||||||||||||||||||||||| || |||||||| || || ||||||||||||||||
Sbjct 689 ATTGCAAGGGGAAACACTGAAGAGTTCTCTCTGCACAGTCGCTATTCTAGGAGTCGATGA 748
Query 678 ACCCTTCCATTTCTTGGACCAGGAAAGCA-TACA-AAAGGTGATTGATACGTTTGAGAAG 735
||| ||||| ||| ||||||||||| ||| |||| |||| |||| || || ||||||||
Sbjct 749 ACCGTTCCACTTCCTGGACCAGGAA-GCAATACAGAAAG-TGATCGACACATTTGAGAAA 806
Query 736 GTTCCCGAGGAAGAGGA-GGATGCTGGTGAGG--G-TGAGGCCGAACCCGAAGCTGC 788
|| || ||||||||||| ||| | || |||| | ||||| || ||||||||||
Sbjct 807 GTGCCAGAGGAAGAGGAAGGA-GAAGGCGAGGCTGGTGAGGGTGAGGCCGAAGCTGC 862
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48626654296
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5