BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473876
Length=1613
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47270.1 | Symbols: AtTLP6, TLP6 | tubby like protein 6 | ch... 2111 0.0
> AT1G47270.1 | Symbols: AtTLP6, TLP6 | tubby like protein 6 |
chr1:17326556-17328728 FORWARD LENGTH=1678
Length=1678
Score = 2111 bits (1143), Expect = 0.0
Identities = 1424/1549 (92%), Gaps = 61/1549 (4%)
Strand=Plus/Plus
Query 101 AGAGAAGGCTTTTAATTTCAAATTCATCGGTGAA---ttcttcttcttc-t--tcttcAT 154
||||||||||||||||||||||||| ||| |||| |||||||||||| | |||||||
Sbjct 155 AGAGAAGGCTTTTAATTTCAAATTCCTCGCTGAATTTTTCTTCTTCTTCTTCGTCTTCAT 214
Query 155 C-G--GAAGAAGAATCCAAAAAACTTATCTCATCTGCAAAAAAT-TAATTGTGCTTCCCC 210
| | |||||||||||| ||||||||||||||||||| | |||| |||||||||||||||
Sbjct 215 CGGAAGAAGAAGAATCC-AAAAACTTATCTCATCTGC-AGAAATATAATTGTGCTTCCCC 272
Query 211 ATGGATTTGTCGC--TT-TT------------CTGGGAAATTTCTGGGGGAGCATATAAA 255
||||||||||||| || || |||||||||||||||||||||| |||||
Sbjct 273 ATGGATTTGTCGCTTTTGTTGCCAAAACGGAGCTGGGAAATTTCTGGGGGAGCAGATAAA 332
Query 256 TTCAGCAGAGTAGCAATGTCATTGAAGAACATAGTAAGAGAGTTTAGGGTGAAGAACAAA 315
||||||||||||||||||||||||||||| | || ||||||||||||
Sbjct 333 ATCAGCAGAGTAGCAATGTCATTGAAGAAC----------A---TA--GTGAAGAACAAA 377
Query 316 TGCAAAGCTATTGGTAGACGAGGGAGGTCACATATTGCACCAGAAGGATCATCTGTGTCA 375
| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct 378 TACAAAGCTATTGGTAGAAGAGGGAGGTCACACATTGCACCAGAAGGATCATCTGTGTCT 437
Query 376 TCTTCTTTATCAACTAATGAAGGTTTAAATCAGAGTATTTGGGTTGATTTGCCTCCAGAG 435
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 438 TCTTCTTTATCAACTAATGAAGGTTTAAACCAGAGTATTTGGGTTGATTTGCCTCCAGAG 497
Query 436 TTACTTCTTGATATAATCCATAGGATTGAGTCTGGACAGACTTTATGGCCGGCGAGAAGA 495
|||||||||||||||||||| ||||||||||||| ||||| ||||||||||| ||| |||
Sbjct 498 TTACTTCTTGATATAATCCAAAGGATTGAGTCTGAACAGAGTTTATGGCCGGGGAGGAGA 557
Query 496 GATGTCGTTGCTTGTGCTTCGGTTTGTAGGTCTTGGAGGGAGATGACTAAAGAAGTTGTT 555
||||| |||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 558 GATGTTGTTGCTTGTGCTTCGGTTTGTAAGTCATGGAGGGAGATGACTAAAGAAGTTGTT 617
Query 556 CAAGTTCCTGAGGTCTCTGGTTTGCTTACGTTTCCGATTTCTTTAAGACAGCCTGGTCCT 615
||||||||||| ||||||||||| | ||||||||||||||||||||||||||||| |||
Sbjct 618 AAAGTTCCTGAGCTCTCTGGTTTGATCACGTTTCCGATTTCTTTAAGACAGCCTGGACCT 677
Query 616 AGAGATGATCCAATTCAATGCTTTATTAAACGGGAAAGAGCTACGGGGATTTACCGTCTC 675
||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 678 AGAGATGCTCCAATTCAATGCTTTATTAAACGTGAAAGAGCTACGGGGATATACCGTCTC 737
Query 676 TATCTCGGTTTAAGCCCTGCTCTTTCTGGTGATAAGAGTAAGCTGTTGTTATCTGCAAAG 735
||||| |||||||||||||||||||| ||||| ||||||||| |||||||||||||||||
Sbjct 738 TATCTTGGTTTAAGCCCTGCTCTTTCCGGTGACAAGAGTAAGTTGTTGTTATCTGCAAAG 797
Query 736 AGAGTCAGGAGAGCGACGGGTGCGGAGTTTGTTGTATCCTTATCGGGAAATGACTTCTCA 795
|||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 798 AGAGTCAGGAGAGCGACGGGTGCGGAGTTTGTTGTATCGTTATCGGGGAATGACTTCTCG 857
Query 796 AGAAGTAGTAGTAATTACATAGGAAAACTGAGATCTAATTTCCTGGGAACCAAGTTCACA 855
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 858 AGAAGTAGTAGTAATTACATAGGAAAACTGAGATCAAATTTCCTGGGAACGAAGTTCACA 917
Query 856 GTCTACGAAAACCAACCTCCTCCGTGTAACCGGAAA-CTTCCACCATCAATGCAAGTGTC 914
||||||||||||||||||||||||| ||||| |||| || |||||||| |||||||||||
Sbjct 918 GTCTACGAAAACCAACCTCCTCCGTTTAACC-GAAAGCTCCCACCATCGATGCAAGTGTC 976
Query 915 TCCATGGGTATCGTCGTCATCTAGTAGTTATAACATAGCTTCCATCTTGTATGAGCTGAA 974
|||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 977 TCCATGGGTATCGTCGTCATCTAGTAGTTACAACATAGCTTCAATCTTGTATGAGCTGAA 1036
Query 975 TGTTCTGAGAACCAGAGGTCCAAGAAGAATGCAATGTATAATGCACAGTATCCCGATTTC 1034
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1037 TGTTCTGAGAACCAGAGGTCCAAGAAGAATGCAATGTATAATGCACAGTATCCCGATTTC 1096
Query 1035 GGCAATTCAAGAAGGCGGCAAAATCCAGTCGCCGCCAACCGACTTCATAAACCAAGGAAA 1094
|| ||||||||||||||||||||||||||||| ||| || |||| ||||||||||||
Sbjct 1097 AGCGATTCAAGAAGGCGGCAAAATCCAGTCGCC---AACGGAGTTCACAAACCAAGGAAA 1153
Query 1095 GAAGAAGAAGAAGCCGCTGATGGATTTCTGCTCAGGGAACCTGGGAGGAGAATCTGTTGT 1154
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
Sbjct 1154 GAAGAAGAAGAAGCCGCTGATGGATTTCTGCTCAGGGAACCTGGGAGGAGAATCCGTTAT 1213
Query 1155 AAAAGAACCATTAATTCTGAAAAACAAGTCTCCGAGATGGCACGAACAGCTCCAATGCTG 1214
|||||||||||||||||||||||||||||| |||||||||||||||||||| || |||||
Sbjct 1214 AAAAGAACCATTAATTCTGAAAAACAAGTCGCCGAGATGGCACGAACAGCTTCAGTGCTG 1273
Query 1215 GTGTCTCAACTTCAAAGGTCGAGTCACAGTCGCCTCGGTGAAAAACTTTCAGCTAGTGGC 1274
|||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1274 GTGTCTAAACTTCAAAGGTCGAGTCACAGTCGCCTCGGTGAAAAACTTCCAGCTAGTGGC 1333
Query 1275 AGCTGCTGCGGAAGCAGGGAAGAACATGAACATCCCAGAAGAGGAACAAGAGAGAGTGAT 1334
||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 1334 AGCTGCTGCAGAAGCAGGGAAGAACATGAACATACCAGAAGAGGAACAAGATAGAGTGAT 1393
Query 1335 ATTACAGTTTGGGAAGATTGGCAAAGACATTTTCACAATGGATTATCGTTACCCGATCTC 1394
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1394 ATTACAGTTTGGGAAGATAGGCAAAGACATTTTCACAATGGATTATCGTTACCCGATCTC 1453
Query 1395 TGCATTCCAAGCATTTGCCATTTGTTTAAGCAGCTTCGACACAAAGCCGGTCTGCGAATG 1454
|||||||||||| ||||| ||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1454 TGCATTCCAAGCTTTTGCTATTTGTTTAAGCAGCTTCGACACGAAGCCAGTCTGCGAATG 1513
Query 1455 AAGCAAA-CATATCATATCAA-TTATATTCTTCCATTTGCAGTTTGTGTGGTTTAATCAA 1512
||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 1514 AAGCAAAACATATCATATCAAATTATATTCTTCTATTTGCAGTTTGTGTGGTTTAAT--- 1570
Query 1513 TGTACATACTTTTCCCTCTTGGAGCAATCAAACAATCAGAACTTTTT---CATTC-AAA- 1567
||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||
Sbjct 1571 -GTACATACTTTTCCCTCTTGGAGCAATCAAACAATCAGATCTTTTTTTTCATTCTAAAA 1629
Query 1568 -CTTTAATTTCTTCTTAAGTTT--AATTAAAAGTAATTAACTTTTGGTT 1613
||||||||||||||||| ||| ||||||||||||||||| |||||||
Sbjct 1630 ACTTTAATTTCTTCTTAATTTTTTAATTAAAAGTAATTAACGTTTGGTT 1678
Score = 150 bits (81), Expect = 3e-35
Identities = 99/107 (93%), Gaps = 4/107 (4%)
Strand=Plus/Plus
Query 1 CTTCTTCTTC-TCCTTCCTCGAAATTATTGCGGTTACTGTCGTCTTCCTCCTTCCTC-C- 57
||| |||||| ||| |||||||||| ||||||||||||||||||||||||||||||| |
Sbjct 8 CTTTTTCTTCTTCC-TCCTCGAAATCATTGCGGTTACTGTCGTCTTCCTCCTTCCTCTCC 66
Query 58 TCTCCGGAATCGAAGCTCACGACGGCGACGGTAACGGCATCGGAGAG 104
||| ||||||||||||||||||||||||| |||||||||||||||||
Sbjct 67 TCTTCGGAATCGAAGCTCACGACGGCGACAGTAACGGCATCGGAGAG 113
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79668264915
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5