BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473882
Length=1647
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47290.2 | Symbols: AT3BETAHSD/D1, 3BETAHSD/D1 | 3beta-hydro... 2534 0.0
AT2G26260.1 | Symbols: AT3BETAHSD/D2, 3BETAHSD/D2 | 3beta-hydro... 1086 0.0
> AT1G47290.2 | Symbols: AT3BETAHSD/D1, 3BETAHSD/D1 | 3beta-hydroxysteroid-dehydrogenase/decarboxylase
isoform 1 | chr1:17335849-17339273
FORWARD LENGTH=1706
Length=1706
Score = 2534 bits (1372), Expect = 0.0
Identities = 1559/1649 (95%), Gaps = 13/1649 (1%)
Strand=Plus/Plus
Query 5 TATCATCGAACGCCGTCGCTCTCGCCGTTGACTTCTACTAGTGACCCCAACGCCGTCGAT 64
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||
Sbjct 49 TATCATCGAACGCCGTCGCTCTCGCCGTTGACTTCTACCAGTGACCCCAACGCCTTCAAT 108
Query 65 TTCCGCCTCGCCGGAAAATCTCATTGGAGAAGACAATGGTGATGGAAGTTACAGAGACTG 124
|||||||||| |||| ||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 109 TTCCGCCTCGTCGGATAATTTCATCGGAGAAGACAATGGTGATGGAAGTTACAGAGACTG 168
Query 125 AGCGATGGTGCGTCGTAACCGGTGGTAGAGGATTCGCTGCAAGACATCTTGTGGAAATGC 184
||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 169 AGCGATGGTGCGTTGTAACTGGTGGTAGAGGATTCGCTGCAAGACATCTTGTAGAAATGC 228
Query 185 TGGTACGTTACGAGATGTTCCATGTACGTATCGCCGATTTAGCTCCGGCGATAGTGCTCG 244
| ||||||||| | |||||||| || |||||||||||||||||||| ||||||||||||
Sbjct 229 TCGTACGTTACCAAATGTTCCACGTTCGTATCGCCGATTTAGCTCCTGCGATAGTGCTCA 288
Query 245 ACCCTCATGAGGAGACTGGACTTCTCGGTGAAGCAATTAGATCCGGTAGAGTTCAATACG 304
| ||||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 289 ATCCTCACGAGGAAACTGGAATTCTCGGTGAAGCAATTAGATCCGGTAGAGTTCAATACG 348
Query 305 TCTCCGCTGATCTTCGGAACAAATCTCAAGTTGTCAAAGGTTTTCAGGGAGCAGAAGTTG 364
||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
Sbjct 349 TCTCCGCTGATCTTCGGAACAAAACTCAAGTTGTCAAAGGTTTTCAAGGAGCAGAAGTGG 408
Query 365 TGTTTCATATGGCAGCTCCAGATTCATCGATTAACAATCACCAGCTTCAGTACTCAGTTA 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 409 TGTTTCATATGGCAGCTCCAGATTCATCGATTAACAATCACCAGCTTCAGTACTCAGTTA 468
Query 425 ATGTTCAAGGGACAACAAATGTAATTGATGCTTGTATTGAGGTTGGAGTAAAGAGACTAA 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 469 ATGTTCAAGGGACAACAAATGTAATTGATGCTTGTATTGAGGTTGGAGTAAAGAGGCTAA 528
Query 485 TCTATACAAGTTCTCCGAGTGTCGTGTTTGACGGGGTCCATGGTACTTTGAATGCCGATG 544
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 529 TCTATACAAGTTCTCCGAGTGTTGTGTTTGACGGGGTCCATGGTACTTTGAATGCTGATG 588
Query 545 AATCAATGCCGTACCCACCCAAGCACAATGACTCATATTCAGCAACTAAAGCTGAAGGGG 604
||||| ||||||| ||||| ||||| ||||| ||||||||||| ||||||||||||||||
Sbjct 589 AATCACTGCCGTATCCACCTAAGCATAATGATTCATATTCAGCTACTAAAGCTGAAGGGG 648
Query 605 AAGCTTTGATCTTGAAAGCTAATGGAAGAAATGGACTACTCACTTGTTGCATACGTCCTA 664
|||||||||| |||||||| |||||||||| |||||||||||||||||||||||||||||
Sbjct 649 AAGCTTTGATTTTGAAAGCGAATGGAAGAAGTGGACTACTCACTTGTTGCATACGTCCTA 708
Query 665 GCAGCATATTTGGTCCTGGTGATAAATTAATGGTTCCATCGCTTGTTACTGCTGCCAGGG 724
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 GCAGCATATTTGGTCCTGGTGATAAATTAATGGTTCCATCGCTTGTTACTGCTGCCAGGG 768
Query 725 CTGGGAAATCCAAGTTCATTATAGGTGATGGGAGTAACTTTTATGATTTCACTTATGTTG 784
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 769 CTGGGAAATCCAAGTTCATTATAGGTGATGGGAGTAACTTCTATGATTTCACTTATGTTG 828
Query 785 AAAATGTTGTGCACGCCCATGTCTGTGCTGAGCGAGCACTAGCATCAGGAGGAGAAGTAT 844
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 829 AAAATGTTGTGCACGCCCATGTCTGTGCTGAGCGAGCTCTAGCATCAGGAGGAGAAGTAT 888
Query 845 GTGCAAAAGCTGCAGGCCAGGCATACTTCATTACCAACATGGAGCCAATTAAATTTTGGG 904
||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 889 GTGCAAAAGCTGCTGGCCAGGCTTACTTCATTACCAACATGGAGCCAATTAAATTTTGGG 948
Query 905 AGTTTATGTCACAGCTTCTTGAAGGACTTGGCTATGCGAGGCCAAGTATAAAGATACCTG 964
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 949 AGTTTATGTCACAGCTTCTTGAAGGACTTGGCTATGAGAGGCCAAGTATAAAGATACCTG 1008
Query 965 CAAGTCTCATGATGCCAATAGCATATCTTGTGGAACTAGCATATAAATTACTCGGACCAT 1024
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1009 CAAGTCTCATGATGCCAATAGCATATCTTGTGGAACTAGCATATAAATTACTCGGACCGT 1068
Query 1025 ATGGGATGAAAGTACCAGTGCTAACACCTTCTAGAGTTAGGCTACTCTCTTGCAACAGAA 1084
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1069 ATGGGATGAAAGTACCAGTGCTAACACCTTCTAGGGTTAGGCTACTCTCTTGCAACAGAA 1128
Query 1085 CTTTTGATTCTTCAAAAGCAAAGGATCGTTTAGGCTATGCTCCCGTTGTCCCACTTCAGG 1144
| |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct 1129 CATTTGATTCTTCAAAAGCAAAGGATCGTTTAGGCTATTCTCCTGTTGTCCCACTTCAGG 1188
Query 1145 AAGGTATAAAGAGGACAATAGATTCGTTCTCACACTTGGCAGCTCAAAATCAACCCAAAA 1204
||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||
Sbjct 1189 AAGGTATAAAGAGGACAATAGATTCATTCTCACACTTGAAAGCTCAAAATCAACCCAAAA 1248
Query 1205 CAGACGTTACTGATACAATTCAATGGAAAAAGCAGACTCTCATTGCCATAGTCATACTGA 1264
|||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1249 CAGAAGTTACTGAAACAATTCAATGGAAAAAGCAGACTCTCATTGCCATAGTCATTCTGA 1308
Query 1265 TTACTCTCTATCATAACTTTGTTGCAACCACGGGATCTTCTTCCTTCACAATAACTGCTC 1324
||||||||||||||||||||||||||||||| ||||| |||||| ||| ||||||||||
Sbjct 1309 TTACTCTCTATCATAACTTTGTTGCAACCACCGGATCATCTTCCGTCATAATAACTGCTG 1368
Query 1325 TTTCCAAGGTTTTGTTGGTATCATCAATTTGTT-TGTTCATCCATGGCATGTTACCAGAG 1383
|||||||||||||||||||||||||||||| || |||||||| ||||||| |||||||||
Sbjct 1369 TTTCCAAGGTTTTGTTGGTATCATCAATTT-TTATGTTCATCAATGGCATTTTACCAGAG 1427
Query 1384 AAAATGAAACTGTTCGGGAGCAAGAAGATCGACTAAAGAAGACTCCAAATTTGAGCTTTG 1443
||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1428 AAAATGAAAGTGTTCGGGAGCAAGAAGATCGACTAAAGAATACTCCAAATTTGAGCTTTG 1487
Query 1444 TGTAAGGTAAACGACGACTTATCTTTTCCTCTCTACACTGATAAACGTGACTCCTG--TG 1501
|||||||||||| ||||||||| ||||||||| |||| |||||||| ||||||||| ||
Sbjct 1488 TGTAAGGTAAACAACGACTTATTTTTTCCTCTATACATTGATAAACATGACTCCTGCCTG 1547
Query 1502 TAG-ATGATGGATGTTGCTATG-T-TGAGTTTTGCGTCGTGTATTTTACCCTTTGTAATT 1558
| | | ||||||||||| | || | ||||||||||||||| |||||||| |||||||||
Sbjct 1548 T-GTA-GATGGATGTTGTT-TGGTCTGAGTTTTGCGTCGTTTATTTTACGATTTGTAATT 1604
Query 1559 TCAACTCAGTAACAGTCGATTTCGGTTACTCTGATACCAAAATTTATGAATCGGTTTGGA 1618
| ||||| ||||| ||||||||||||||||||||||||||||| ||||||| | | | |
Sbjct 1605 TGAACTCTGTAACTGTCGATTTCGGTTACTCTGATACCAAAATCTATGAATTGAT--G-A 1661
Query 1619 TCAATACTTGTGTTTGTCCGCTTAATTTA 1647
|||||||||||||||||| ||||||||||
Sbjct 1662 TCAATACTTGTGTTTGTCAGCTTAATTTA 1690
> AT2G26260.1 | Symbols: AT3BETAHSD/D2, 3BETAHSD/D2 | 3beta-hydroxysteroid-dehydrogenase/decarboxylase
isoform 2 | chr2:11178100-11182976
FORWARD LENGTH=1936
Length=1936
Score = 1086 bits (588), Expect = 0.0
Identities = 936/1105 (85%), Gaps = 20/1105 (2%)
Strand=Plus/Plus
Query 114 TACAGAGACTGAGCGATGGTGCGTCGTAACCGGTGGTAGAGGATTCGCTGCAAGACATCT 173
||| ||||| |||||||||||||| || ||||| |||||||||||||| || || |||||
Sbjct 152 TACGGAGACGGAGCGATGGTGCGTTGTTACCGGCGGTAGAGGATTCGCGGCGAGGCATCT 211
Query 174 TGTGGAAATGCTGGTACGTTACGAGATGTTCCATGTACGTATCGCCGATTTAGCTCCGGC 233
||| |||||||| ||||| ||||| ||||| || |||||||||||||||||||||||
Sbjct 212 TGTTGAAATGCTCGTACGCTACGAAATGTTTTGCGTCCGTATCGCCGATTTAGCTCCGGC 271
Query 234 GATAGTGCTCGACCCTCATG-A-GGAGACTGGACTTCTCGGTGAAGCAATT-AGATCCGG 290
|||| |||| || ||||| | | ||| || ||| |||||| |||| ||| ||||| ||
Sbjct 272 GATAATGCTTGATCCTCAGGAAGGGA-AC-GGAGTTCTCGACGAAG-GATTAAGATCTGG 328
Query 291 TAGAGTTCAATACGTCTCCGCTGATCTTCGGA-ACAAATCTCAAGTTGTCAAAGGTTTTC 349
| | |||||||| ||||||||||||||| || | ||||||||||| || |||| |||||
Sbjct 329 TCGTGTTCAATATATCTCCGCTGATCTTC-GAGATAAATCTCAAGTCGTTAAAGCTTTTC 387
Query 350 AGGGAGCAGAAGTTGTGTTTCATATGGCAGCTCCAGATTCATCGATTAACAATCACCAGC 409
||||||| || || |||||||||||||||||||||||||| || ||||||||||| ||||
Sbjct 388 AGGGAGCGGAGGTGGTGTTTCATATGGCAGCTCCAGATTCTTCTATTAACAATCATCAGC 447
Query 410 TTCAGTACTCAGTTAATGTTCAAGGGACAAC-AAATGTAATTGATGCTTGTATTGAGGTT 468
||||||| || || |||||||||||||| || |||||| |||||||||||| |||| |||
Sbjct 448 TTCAGTATTCGGTGAATGTTCAAGGGAC-ACAAAATGTGATTGATGCTTGTGTTGATGTT 506
Query 469 GGAGTAAAGAGACTAATCTATACAAGTTCTCCGAGTGTCGTGTTTGACGGGGTCCATGGT 528
||||||||||| || || || || || ||||| ||||| |||||||| || || ||||||
Sbjct 507 GGAGTAAAGAGGCTTATTTACACTAGCTCTCCTAGTGTTGTGTTTGATGGTGTTCATGGT 566
Query 529 ACTTTGAATGCCG-A-TGAATCAATGCCGTACCCACCCAAGCACAATGACTCATATTCAG 586
| |||||| | | | |||||||||| | |||||| ||||||||||||||||||||||
Sbjct 567 ATTTTGAA--CGGTACTGAATCAATGGCTTACCCAATTAAGCACAATGACTCATATTCAG 624
Query 587 CAACTAAAGCTGAAGGGGAAGCTTTGATCTTGAAAGCTAATGGAAGAAATGGACTACTCA 646
|||||||||||||||| |||| |||||| |||| |||||||| ||||||||||||||||
Sbjct 625 CAACTAAAGCTGAAGGAGAAGAGTTGATCATGAAGGCTAATGGTAGAAATGGACTACTCA 684
Query 647 CTTGTTGCATACGTCCTAGCAGCATATTTGGTCCTGGTGATAAATTAATGGTTCCATCGC 706
|||||||||||||||| ||||| || |||||||| ||||||| |||| ||||||| ||||
Sbjct 685 CTTGTTGCATACGTCCAAGCAGTATTTTTGGTCCCGGTGATAGATTATTGGTTCCGTCGC 744
Query 707 TTGTTACTGCTGCCAGGGCTGGGAAATCCAAGTTCATTATAGGTGATGGGAGTAA-CTTT 765
||||| ||||||| |||||||||||||| ||||| ||||| |||||||||| ||| || |
Sbjct 745 TTGTTGCTGCTGCTAGGGCTGGGAAATCTAAGTTTATTATTGGTGATGGGAATAATCTCT 804
Query 766 TATGATTTCACTTATGTTGAAAATGTTG-TGCACGCCCATGTCTGTGCTGAGCGAGCACT 824
||||||||||||| ||||| ||||||| | || |||||||| ||||||||||| || ||
Sbjct 805 -ATGATTTCACTTACGTTGAGAATGTTGCT-CATGCCCATGTTTGTGCTGAGCGTGCTCT 862
Query 825 AGCATCAGGAGGAGAAGTATGTGCAAAAGCTGCAGGCCAGGCATACTTCATTACCAACAT 884
||| ||||||||||| || | | ||||||||||||| |||||||| ||||||||||||||
Sbjct 863 AGCTTCAGGAGGAGATGTTTCTACAAAAGCTGCAGGACAGGCATATTTCATTACCAACAT 922
Query 885 GGAGCCAATTAAATTTTGGGAGTTTATGTCACAGCTTCTTGAAGGACTTGGCTATGCGAG 944
||||||||||||||||||||| |||||||||||||| ||||| |||||||| || | |||
Sbjct 923 GGAGCCAATTAAATTTTGGGAATTTATGTCACAGCTCCTTGATGGACTTGGTTACGAGAG 982
Query 945 GCCAAGTATAAAGATACCTGCAAGTCTCATGATGCCAATAGCATATCTTGTGGAACT-AG 1003
|||||| |||||||| ||||| | |||||||||| || || |||| || ||||| |
Sbjct 983 GCCAAGCATAAAGATCCCTGCGTTTATCATGATGCCGATTGCGCATCTGGTTGAACTGA- 1041
Query 1004 CATATAAATTACTCGGACCATATGGGATGAAAGTACCAGTGCTAACACCTTCTAGAGTTA 1063
|||||||| | | |||||||||||||||| ||||||| ||||||||||| |||||||
Sbjct 1042 CATATAAAGTGTTGGGACCATATGGGATGACAGTACCACAACTAACACCTTCAAGAGTTA 1101
Query 1064 GGCTACTCTCTTGCAACAGAACTTTTGATTCTTCAAAAGCAAAGGATCGTTTAGGCTATG 1123
|||| ||||| |||| ||||||||| ||||| | |||||||||||||| |||||||||
Sbjct 1102 GGCTTCTCTCATGCAGCAGAACTTTCGATTCCACGAAAGCAAAGGATCGACTAGGCTATG 1161
Query 1124 CTCCCGTTGTCCCACTTCAGGAAGGTATAAAGAGGACAATAGATTCGTTCTCACACTTGG 1183
|||| || ||||||||||||||||||||| |||||| ||||| || ||||| ||| |
Sbjct 1162 CTCCTGTGGTCCCACTTCAGGAAGGTATACGGAGGACGATAGACTCATTCTCTCACCTAA 1221
Query 1184 CAGCTCAAAATCAACCCAAAACAGA 1208
||||| || |||| |||||| |||
Sbjct 1222 CAGCTGGAAGTCAATCCAAAAGAGA 1246
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81375083445
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5