BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473883
Length=1800
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47330.1 | Symbols: | CBS domain-containing protein with a ... 2798 0.0
> AT1G47330.1 | Symbols: | CBS domain-containing protein with
a domain of unknown function (DUF21) | chr1:17351050-17353875
FORWARD LENGTH=1819
Length=1819
Score = 2798 bits (1515), Expect = 0.0
Identities = 1727/1824 (95%), Gaps = 36/1824 (2%)
Strand=Plus/Plus
Query 1 AACCTCAAAGAGTCACTCTTAAA-TCATCTCTCTCGCCGAATTCT-CCC--CAA------ 50
||| |||||||||||||| |||| ||||||||||||||||||||| ||| |||
Sbjct 3 AACATCAAAGAGTCACTC-TAAACTCATCTCTCTCGCCGAATTCTCCCCAACAATTTCCG 61
Query 51 -C---AA-AAATTCTCAGATTCCGGTAACTCT-AAACTATGGCGTCGGATATTCCGTGTT 104
| || |||||||||||||||||||||||| |||||||| | |||||||||||||| |
Sbjct 62 CCGGAAACAAATTCTCAGATTCCGGTAACTCTAAAACTATGTCATCGGATATTCCGTGCT 121
Query 105 GCGGAACCACGTTCTCGCTCTACGTCGTGATAACCATAGCTCTTGTAGCGTTCGCTGGTT 164
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct 122 GCGGAACCACGTTCTCGCTCTACGTCGTGATAATCATAGCTCTTGTAGCGTTCGCTGGCT 181
Query 165 TGATGGCTGGTTTAACGCTTGGTCTCATGTCTCTTGGATTAGTCGACCTCGAAGTTCTCA 224
|||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||
Sbjct 182 TGATGGCTGGTTTAACTCTTGGTCTCATGTCTCTCGGTTTAGTCGACCTCGAAGTTCTCA 241
Query 225 TCAAATCTGGTCGTCCTCAAGATCGAATCAACGCCGGTAAGATATTTCCAGTGGTGAAGA 284
|||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 242 TCAAATCTGGCCGTCCTCAAGATCGAATCAACGCCGGTAAGATATTTCCAGTAGTGAAGA 301
Query 285 ATCAGCATCTGTTGCTTTGTACACTTTTGATCGGAAACTCTATGGCTATGGAGGCTTTAC 344
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 ATCAGCATCTGTTGCTATGTACACTTTTGATCGGAAACTCTATGGCTATGGAGGCTTTAC 361
Query 345 CAATATTTTTGGATAAAATTGTGCCTCCATGGTTAGCTATTCTTCTTTCAGTGACTCTTA 404
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 362 CAATATTTTTGGATAAAATTGTGCCTCCTTGGTTAGCTATTCTTCTTTCAGTGACTCTTA 421
Query 405 TACTGGTGTTTGGAGAGATAATGCCACAAGCAGTTTGTACTCGATACGGGCTCAAGGTTG 464
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 422 TACTGGTGTTTGGAGAGATAATGCCACAAGCAGTTTGTACTCGATACGGGCTTAAGGTTG 481
Query 465 GAGCGATAATGGCTCCTTTTGTTCGTGTTCTTCTTATATTGTTCTTCCCTATTTCATATC 524
||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||
Sbjct 482 GAGCGATAATGGCTCCTTTTGTTCGTGTTCTTCTTGTACTGTTCTTCCCAATTTCATATC 541
Query 525 CAATCAGCAAGGTTCTTGATTGGATGTTGGGTAAGGGACATGGTGTTCTTTTACGGAGAG 584
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 542 CAATCAGTAAGGTTCTTGATTGGATGTTGGGTAAGGGACATGGAGTTCTTTTACGGAGAG 601
Query 585 CAGAGCTGAAGACATTTGTGAACTTCCATGGAAATGAGGCTGGGAAAGGTGGAGATCTAA 644
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 602 CAGAGCTAAAGACATTTGTGAATTTCCATGGAAATGAGGCTGGGAAAGGTGGAGATCTAA 661
Query 645 CAACCGATGAGACTTCTATCATCACAGGTGCACTTGAATTAACTGAAAAGACAGCAAAAG 704
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 662 CAACCGATGAGACTTCAATCATCACAGGTGCACTTGAATTAACTGAAAAGACGGCAAAAG 721
Query 705 ATGCAATGACTCCCATATCGAATGCATTTTCCCTTGAGCTTGATACAACTCTTAATTTGG 764
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 722 ATGCAATGACTCCCATATCGAATGCATTTTCCCTTGAGCTTGATACACCTCTTAATTTGG 781
Query 765 AAACTTTGAATACAATAATGTCAGTTGGTCATAGCAGAGTTCCTGTTTATTTCAGAAATC 824
||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 782 AAACTTTAAATACAATTATGTCAGTTGGTCATAGCAGAGTTCCAGTTTATTTCAGAAATC 841
Query 825 CGACACATATAATTGGGCTCATTCTGGTTAAAAATCTTTTGGCAGTTGATGCCAGAAAGG 884
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 842 CCACACATATAATTGGGCTCATTCTGGTTAAAAATCTATTGGCAGTTGATGCCAGAAAGG 901
Query 885 AAGTTCCTCTGAGAAAAATGTCCATGAGAAAAATTCCGCGTGTCTCTGAGACAATGCCAC 944
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 902 AAGTTCCTCTGAGAAAAATGTCCATGAGAAAAATTCCACGTGTCTCTGAGACCATGCCAC 961
Query 945 TATACGATATCCTAAATGAGTTCCAGAAGGGTCACAGTCACATAGCAGTTGTTTACAAGG 1004
|||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 962 TATATGATATCTTAAACGAGTTCCAGAAGGGTCACAGTCACATAGCAGTTGTTTACAAGG 1021
Query 1005 ATCTTGACGAGCAGGAGCAATCTCTCGAAACAAGTGAAAATGGTATTGAACGCAGAAAGA 1064
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| |
Sbjct 1022 ATCTTGACGAGCAGGAGCAATCTCCCGAAACAAGTGAAAATGGTATTGAGCGCAGAAAAA 1081
Query 1065 ACAAGAAAACGAAAGACGAACTTTTTAAGGACAGTTGTAGGAAACCAAAAGCTCAGTTTG 1124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 ACAAGAAAACGAAAGACGAACTTTTTAAGGACAGTTGTAGGAAACCAAAAGCTCAGTTTG 1141
Query 1125 AGGTATCAGAGAAGGAAGTATTCAAAATTGAAACCGGAGATGCAAAATCCGGCAAGAGTG 1184
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1142 AGGTATCGGAGAAGGAAGTATTCAAAATTGAAACCGGAGATGCAAAATCCGGCAAGAGTG 1201
Query 1185 AGAACGGTGAGGAGCAGC-A--G---GGGAAAACAAGTCTATTGGCTGCTCCAGCTAAGA 1238
|||||||||||||||||| | | ||||||||||||||||||||||||||||||||||
Sbjct 1202 AGAACGGTGAGGAGCAGCAAGGGTCAGGGAAAACAAGTCTATTGGCTGCTCCAGCTAAGA 1261
Query 1239 AGCGACATAGAGGCTGTTCGTTCTGCATTTTGGATATTGAGAATACTCCCATACCTGATT 1298
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1262 AGCGACATAGAGGCTGTTCGTTCTGCATTTTGGACATTGAGAATACTCCCATACCTGATT 1321
Query 1299 TCCCCACCAATGAAGAAGTTGTAGGAGTTATCACCATGGAGGATGTTATCGAAGAGCTTC 1358
| || |||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1322 TTCCTACCAATGAGGAGGTTGTAGGAGTTATCACCATGGAGGATGTTATCGAAGAGCTTC 1381
Query 1359 TTCAGGAAGAGATCCTTGACGAAACCGATGAGTATGTGAACATCCACAACAGGATAAGAG 1418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1382 TTCAGGAAGAGATCCTTGACGAAACCGATGAGTATGTGAACATCCACAACAGGATAAGAG 1441
Query 1419 TCAACATGCATGCTTCTC-AGGAGAATCTACCAAGCATAATAACCTCGATCACGCAATCA 1477
|||||||||||||||||| || |||||||||||||| | |||||||| ||||||||||||
Sbjct 1442 TCAACATGCATGCTTCTCCAG-AGAATCTACCAAGCGTGATAACCTCAATCACGCAATCA 1500
Query 1478 TCATCGGGTTCCACTAGTCCCAACCAAACATCTCATATGGCCACACCAGATTCAAGTCCT 1537
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1501 TCATCGGGTTCCACTAGTCCCAACCAAACATCTCATATGGCCACACCAGATTCAAGTCCT 1560
Query 1538 ACAACAAAGCCATCAAGTTCAAGCCCCACAAGAAAACCTTCAGTATCAAGTCCTACGAGA 1597
|||||||| ||||||| |||||| || |||||||||||||||||||| ||||||||||||
Sbjct 1561 ACAACAAAACCATCAAATTCAAGTCCTACAAGAAAACCTTCAGTATCGAGTCCTACGAGA 1620
Query 1598 AAGCCTTCAGATTCTTCCCACTCCATGGCACCAAAACATGAAGAGTCCACCCAAACTTTA 1657
|||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1621 GAGCCTTCAGATTCTTCACACTCCATGGCTCCAAAACATGAAGAGTCCACCCAAACTTTA 1680
Query 1658 TGATATATCATATATGAGTGAAGAAGATAGAT-AGTTATATATTCTTAAAAGATGACTTC 1716
|||| |||||||||||||||||| ||||| || ||| ||| ||||||||||||||||
Sbjct 1681 TGATG-ATCATATATGAGTGAAGA---TAGATTAGCTATGTATCCTTAAAAGATGACTTC 1736
Query 1717 TTCAACAGAATCGTTTGTCTATGTTTGAGATTAAGACTGGTTAATAGTTTCTTTGTACGT 1776
|| ||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
Sbjct 1737 TTTAACAGAATCGTTTGTGT--GTTTGAGATTAAGACTGGTTAATAGTTTCTTTGTAA-T 1793
Query 1777 AAAGAAAAGGATGGATCTTTTACC 1800
|||||||||||||||||||||
Sbjct 1794 ---GAAAAGGATGGATCTTTTACC 1814
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 89055766830
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5