BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473885
Length=1995
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47380.1 | Symbols: | Protein phosphatase 2C family protein... 3107 0.0
> AT1G47380.1 | Symbols: | Protein phosphatase 2C family protein
| chr1:17372537-17376075 REVERSE LENGTH=2046
Length=2046
Score = 3107 bits (1682), Expect = 0.0
Identities = 1908/2014 (95%), Gaps = 28/2014 (1%)
Strand=Plus/Plus
Query 1 TCCTCTCTTTGCGCGTTTTCTCTAATTCTCTCTCTCCTACGGCTGTTGAAACC-ATGGCA 59
||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct 41 TCCTCTCTTTGCGCGTTTTCTCT-CTTCTCTCTCTCCTACGGCTGTTGAAACCAATGGCA 99
Query 60 TTTCTCCACTTCGCCGGAATTTCGATCGGAAGATGAATCATCTCCTTCGTCTCTCTTCGC 119
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 100 TTTCTCCACTTCGCCGGAATTTCGATCGGAAGATGAATCGTCTCCTTCGTCTCTCTTCGC 159
Query 120 GTAATCTTCCATCTTCTTCAATCGCCGCCTAATTGCAAATCCAAATCGTTTTTTGTATGA 179
||||| || ||||||||| |||||| |||||||||||||||||||||||||||||||
Sbjct 160 TTAATCGTCGATCTTCTTCTGTCGCCGTCTAATTGCAAATCCAAATCGTTTTTTGTATGG 219
Query 180 T-TGGGAGATTTGGTGAAGAACTAGACACAGCTTAGAGGAAGCTTTTAGTTTTTA-T-AA 236
| | |||||||||||||||||||||| |||||||||||||||||||| | |||| | ||
Sbjct 220 TAT-AGAGATTTGGTGAAGAACTAGACGCAGCTTAGAGGAAGCTTTTA-TATTTATTGAA 277
Query 237 GCTTAGGGGGAAACAATGTCAACTAAGGGAGAACATCATACAGTTCCACTTTCTGTGTTG 296
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 278 GCTTAGGGGGAAACAATGTCAACAAAGGGAGAACATCATACAGTTCCACTTTCTGTGTTG 337
Query 297 CTTAAGCGTGAATCAGCTAATGAAAAGATAGACAATCCTGAACTTATACACGGACAGGC- 355
||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 338 CTTAAACGTGAATCAGCTAATGAAAAGATAGACAATCCTGAACTTATACACGGCCA-GCA 396
Query 356 TAATCAGAGCAAGAAAGGAGAGGATTTTACTCTTGTTAAAACTGAGTGTCAACGGGTTAT 415
|| || ||||||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 397 CAACCAAAGCAAGAAAGGAGAGGATTTTACTCTTGTTAAAACAGAGTGTCAACGTGTTAT 456
Query 416 GGGTGATGGCGTTACTACCTTCTCGGTTTTTGGGCTTTTTGATGGACACAATGGTTCTGC 475
||| ||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 457 GGGCGATGGTGTTACCACCTTCTCCGTTTTTGGGCTTTTTGATGGACACAATGGTTCTGC 516
Query 476 AGCAGCTATCTACACTAAGGAGAACCTTTTGAACAATGTGTTAGCTGCAATACCCTCTGA 535
|||||||||||||||||| |||||||||||||| ||||| |||||||||||||| |||||
Sbjct 517 AGCAGCTATCTACACTAAAGAGAACCTTTTGAATAATGTATTAGCTGCAATACCTTCTGA 576
Query 536 TCTTAACAGAGATGAGTGGGTTGCGGCACTTCCTAGGGCTTTGGTTGCAGGATTTGTGAA 595
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 577 TCTTAACAGAGATGAGTGGGTTGCTGCACTTCCTAGGGCTTTGGTTGCAGGATTTGTGAA 636
Query 596 AACTGATAAAGATTTTCAGGAAAGAGCAAGGACGTCTGGAACGACTGTAACTTTTGTCAT 655
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 637 AACTGATAAAGATTTCCAGGAAAGAGCAAGGACGTCTGGAACGACTGTAACTTTTGTCAT 696
Query 656 AGTAGAAGGTTGGGTGGTGAGTGTTGCATCTGTAGGTGACTCTCGTTGCATACTTGAGCC 715
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 697 AGTAGAAGGATGGGTGGTGAGTGTTGCATCTGTAGGTGACTCTCGTTGCATACTTGAGCC 756
Query 716 TGCTGAGGGCGGTGTCTATTATTTGTCTGCTGATCATCGGCTTGAAATTAACGAAGAAGA 775
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 757 TGCTGAGGGCGGTGTCTATTATTTGTCTGCTGATCATCGGCTTGAAATAAACGAAGAAGA 816
Query 776 GCGAGATCGAGTCACTGCAAGTGGTGGTGAAGTTGGTCGGTTAAATACTGGTGGTGGTAC 835
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 817 GCGAGATCGAGTCACTGCAAGTGGTGGTGAAGTTGGTCGGTTAAATACTGGTGGCGGTAC 876
Query 836 TGAGATTGGTCCTCTGCGATGTTGGCCTGGTGGTCTTTGTCTCTCAAGATCCATTGGAGA 895
|||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 877 TGAGATTGGTCCTCTGAGATGTTGGCCTGGTGGTCTGTGTCTCTCAAGATCCATTGGAGA 936
Query 896 TCTGGATGTTGGCGAATACATTGTCCCAGTTCCTTATGTGAAGCAAGTCAAGTTGTCTTC 955
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 937 TCTGGATGTTGGCGAATACATTGTTCCAGTTCCTTATGTAAAGCAAGTCAAGTTGTCTTC 996
Query 956 AGCTGGTGGTCGACTGATCATCTCAAGTGATGGTGTGTGGGATGCAATCTCTGCAGAGGA 1015
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 997 AGCTGGTGGTCGACTGATCATCTCAAGTGATGGTGTGTGGGATGCAATATCTGCAGAAGA 1056
Query 1016 GGCTCTTGATTGTTGCCGGGGTTTGCCACCTGAATCTTCCGCGGAGCATATTGTTAAAGA 1075
||||||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||||
Sbjct 1057 GGCTCTTGATTGTTGCCGGGGGTTGCCACCTGAATCTTCTGCGGAGCATATCGTTAAAGA 1116
Query 1076 AGCTGTGGGTAAAAAAGGTCTTCGCGATGATACAACCTGTATTGTTGTTGATATATTGCC 1135
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 1117 AGCTGTGGGTAAAAAAGGTATTCGTGATGATACAACCTGTATTGTTGTTGATATATTGCC 1176
Query 1136 ACTAGAAAAACCGGCTGCTTCCGTGCCGCCTCCAAAAAAGCAAGGAAAAGGAATGCTAAA 1195
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1177 ACTAGAAAAACCGGCTGCTTCCGTGCCGCCTCCAAAAAAGCAAGGAAAAGGAATGTTAAA 1236
Query 1196 GTCCATGTTCAAAAGAAAAACATCTGACTCCTCTTCTAATATCGAGAAAGAGTATGCAGA 1255
||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1237 GTCCATGTTCAAAAGGAAAACATCTGACTCCTCTTCTAATATCGAGAAAGAGTACGCAGA 1296
Query 1256 ACCTGATGTAGTTGAAGAACTGTTTGAAGAGGGCTCTGCTATGCTTTCAGAGAGATTAGA 1315
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||
Sbjct 1297 ACCTGATGTAGTTGAAGAACTCTTTGAAGAGGGCTCTGCTATGCTATCAGAGAGATTAGA 1356
Query 1316 TACAAAGTACCCGCTTTGCAATATGTTTAAGTTGTTCATGTGTGCTGTGTGTCAAGTAGA 1375
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1357 CACAAAGTACCCGCTTTGCAATATGTTTAAGTTGTTCATGTGTGCTGTGTGTCAAGTAGA 1416
Query 1376 AGTGAAACCTGGAGAAGGAGTGTCGATCCATGCTGGATCGGATAATTGCCGTAAGCTTCG 1435
|||||||||||||||||| || ||||||||||| || |||||||||||||||||||||||
Sbjct 1417 AGTGAAACCTGGAGAAGGTGTCTCGATCCATGCCGGGTCGGATAATTGCCGTAAGCTTCG 1476
Query 1436 TCCCTGGGATGGTCCATTCCTTTGCGCAAGTTGCCAAGATAAGAAAGACGCAATGGAAGG 1495
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1477 TCCCTGGGATGGTCCATTCCTTTGTGCAAGTTGCCAAGATAAGAAAGACGCAATGGAAGG 1536
Query 1496 GAAAAGATCATCGGGAGATAGACATAGTAGTGAAAGCGACTAGCCATCAATCTGCAATTT 1555
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1537 GAAAAGATCATCGGGAGATAGACATAGTAGTGAAAGCGACTAGCCAGCAATCTGCAAATT 1596
Query 1556 ATTGGCAAAGCAACTAACAAAACAGTATTGTGAGTAAATTGGAGCGGTTCAAAGATCTTC 1615
||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 1597 ATTGGCAAAGCAACTAACAAAACAGTATTGTGAGTAAATTGGAGCAGTTCAAGGATCTTC 1656
Query 1616 GGGTTGTAATTTTTCACCCAGAGAGAGAT--GAAATTCCTTGATCAACCACCAACATTCT 1673
|||||||||||||||||||| |||||||| ||| ||||||||| |||||||||||||||
Sbjct 1657 GGGTTGTAATTTTTCACCCATAGAGAGATATGAAGTTCCTTGATAAACCACCAACATTCT 1716
Query 1674 TACCATTCTCCAGCAGACTCCAAAGCAGTTTAtttttttCTT-TCTTA-TTCAATGTAA- 1730
||||||||||||||||||||||| | ||||||||| ||| || || | |||| | |
Sbjct 1717 TACCATTCTCCAGCAGACTCCAAGGAAGTTTATTTATTT-TTCTCCCACTTCAC-G-ACG 1773
Query 1731 TCCGACATCAAACTTGTTTCAAAGTAGAGGTAATTCATAAGTTCttttcattttt--tt- 1787
|| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1774 TCTTACATCAAACTTGTTTCAAAGTAGAGGTAATTCATAAGTTCTTTTCATTTTTCCTTT 1833
Query 1788 -c-tttttttt-GTCCATTTGTGATCACTCTGTGCTTTGGTATTTAAAAAATGAGTAGAA 1844
| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1834 TCATTTTTTTTTGTCCATTTGTGATCACTCTGTGCTTTGGTATTTCAAAAATGAGTAGAA 1893
Query 1845 CTAACTACCAGCA-ACAGTAGCTTTATTACTTCTGTTGAAATTGTGG-GTCGTTTAGGGA 1902
||||||||||| | |||||||||||||||| ||||||||||| || | |||||||||| |
Sbjct 1894 CTAACTACCAG-AGACAGTAGCTTTATTACGTCTGTTGAAAT-GTTGAGTCGTTTAGGAA 1951
Query 1903 GAGAGGGTAAAGAAGATATGCAAGTCTGTGTGCAATTATTTCAATGTATAAACCGAAGAC 1962
|||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1952 GAGAGGGTAAGGAAGATATGCAAGTATGTGTGCAATTATTTCAATGTATAAACCGAAGAC 2011
Query 1963 AAATTCTTGATAGAAG-CAAATCATTTTTCATGT 1995
||||||||||||||| |||||||||||||||||
Sbjct 2012 AAATTCTTGATAGAAATCAAATCATTTTTCATGT 2045
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98844873105
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5