BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg473886

Length=520
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G61370.1 | Symbols:  | Protein of unknown function (DUF3245)...   749    0.0  
  AT4G07940.1 | Symbols:  | Protein of unknown function (DUF3245)...   357    6e-98


> AT3G61370.1 | Symbols:  | Protein of unknown function (DUF3245) 
| chr3:22706312-22708509 FORWARD LENGTH=625
Length=625

 Score =  749 bits (405),  Expect = 0.0
 Identities = 472/504 (94%), Gaps = 5/504 (1%)
 Strand=Plus/Plus

Query  1    GGTGGTGGTACTCTAGTAGCAATGACAACGGAAACGGCAAAGAAGAAGGGAACTCCACTG  60
            ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  92   GGTGGTGATACTCTAGTAGCAATGACAACGGAAACGGCAAAGAAGAAGGGAACTCCACAG  151

Query  61   ATTCTTAAAACAGATAAGACACAAAAACTTGCTGAGAAGTGGGTTGCCAATATGACGAGG  120
            ||| |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct  152  ATTTTTAAAACAGATAAGGCACAAAAACTTGCTGAGAAGTGGGTTGCCAGTATGACGAGG  211

Query  121  TACGCAGATGATGATCCTATCGAGACTGCACAAGAAGAACGACCACACAGGCTTGGACTT  180
              | |||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  212  CCCACAGAGGATGATCCTATTGAGACTGCACAAGAAGAACGACCACACAGGCTTGGACTT  271

Query  181  GGTGCTAAAGTGTCACGACAAACAAAGCGTAGACCCTCAGACGACCCTCTCGATCAGAAA  240
            |||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct  272  GGTGCTCAAGTGTCACGACAAACAAAGCGTAGACCTTCAGACGACCCTCTCGATCAGAAA  331

Query  241  CTAGAAGCCAAGTTTGCTGCAGGGAAAAGAAATAATGCAAGATCGGTTGCAGAATCCGCT  300
            |||||||||||||||||||||| ||||||||| |||||||||| |||||||||| | |||
Sbjct  332  CTAGAAGCCAAGTTTGCTGCAGTGAAAAGAAAAAATGCAAGATTGGTTGCAGAAGCTGCT  391

Query  301  GGTTCTAGTAAGAACGCCAGTGATGATAGTGAGGATGATGATGAATCAGAAAGCAAAAGT  360
            |||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||| 
Sbjct  392  GGTTCTAGTAAGAATGCCGGTGATGACAGTGAGGATGATGATGAATCAGAAAGCAAAAGC  451

Query  361  CAAGCATTCGGCAAGAAAAAGAAAAATACAAGTACGCCTCATTAGA-TTCTGTGATGTAC  419
            |||||||| || ||||||||||||||||||||||| |||||||||| || ||||||||||
Sbjct  452  CAAGCATTTGGTAAGAAAAAGAAAAATACAAGTACTCCTCATTAGAGTT-TGTGATGTAC  510

Query  420  TATAGTAAAAAGGTAATGGCCTTGTATTTGTTTTGATTGTTGGCA-AAGAGCTAAAACGC  478
            |||||||||||| | |||||||||||||||||||||||||||| | ||||||||||||||
Sbjct  511  TATAGTAAAAAG-TCATGGCCTTGTATTTGTTTTGATTGTTGG-ATAAGAGCTAAAACGC  568

Query  479  TTAATTGTAGTTCGATTGGAACAT  502
             |||||||||||| ||||||||||
Sbjct  569  ATAATTGTAGTTCTATTGGAACAT  592


> AT4G07940.1 | Symbols:  | Protein of unknown function (DUF3245) 
| chr4:4792673-4794109 FORWARD LENGTH=420
Length=420

 Score =  357 bits (193),  Expect = 6e-98
 Identities = 221/235 (94%), Gaps = 0/235 (0%)
 Strand=Plus/Plus

Query  171  GCTTGGACTTGGTGCTAAAGTGTCACGACAAACAAAGCGTAGACCCTCAGACGACCCTCT  230
            |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct  186  GCTTGGACTTGGTGCTCAAGTGTCACGACAAAAAAAGCGTAGACCCTCAGACGACCCTCT  245

Query  231  CGATCAGAAACTAGAAGCCAAGTTTGCTGCAGGGAAAAGAAATAATGCAAGATCGGTTGC  290
            |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct  246  CGATCAGAAACTAGAAGCCAAGTTTGCTGCAGGGAAAAGAAAAAATGCAAGATTGGTTGC  305

Query  291  AGAATCCGCTGGTTCTAGTAAGAACGCCAGTGATGATAGTGAGGATGATGATGAATCAGA  350
            |||||| ||||||||||||||||| ||| ||||||| | |||||||| ||||||||||||
Sbjct  306  AGAATCTGCTGGTTCTAGTAAGAATGCCGGTGATGACAATGAGGATGGTGATGAATCAGA  365

Query  351  AAGCAAAAGTCAAGCATTCGGCAAGAAAAAGAAAAATACAAGTACGCCTCATTAG  405
            ||||||||| |||||||| || | |||||||||||||||||||||||||||||||
Sbjct  366  AAGCAAAAGCCAAGCATTTGGTATGAAAAAGAAAAATACAAGTACGCCTCATTAG  420


 Score =  122 bits (66),  Expect = 2e-27
 Identities = 89/100 (89%), Gaps = 2/100 (2%)
 Strand=Plus/Plus

Query  1    GGTGGTGGTACTCTAGTAGCAATGACAACGGAAACGGCAAAGAAGAAGGGAACTCCACTG  60
            ||||||| ||||||||||||||||||||||||||||| ||||||||||||| |  ||| |
Sbjct  88   GGTGGTGATACTCTAGTAGCAATGACAACGGAAACGGAAAAGAAGAAGGGACCAACACAG  147

Query  61   ATTCTTAAAACAGATAAGACA-CAAAAACTTGCTGAGAAG  99
            |||||||||||||| ||| || | ||| ||||||||||||
Sbjct  148  ATTCTTAAAACAGACAAGGCAACTAAA-CTTGCTGAGAAG  186



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 24865902765


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5