BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473889
Length=1050
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47420.1 | Symbols: SDH5 | succinate dehydrogenase 5 | chr1:... 1380 0.0
AT1G47410.1 | Symbols: | unknown protein; Has 26 Blast hits to... 219 6e-56
AT1G47260.1 | Symbols: APFI, GAMMA CA2 | gamma carbonic anhydra... 219 6e-56
> AT1G47420.1 | Symbols: SDH5 | succinate dehydrogenase 5 | chr1:17395518-17397255
REVERSE LENGTH=1109
Length=1109
Score = 1380 bits (747), Expect = 0.0
Identities = 958/1057 (91%), Gaps = 26/1057 (2%)
Strand=Plus/Plus
Query 1 TCACAAAAATGGGAACCCTAGGACGAGCGATTCACTCTCTCGGTAACCGGATTCGTGCAA 60
||| ||||||||||||||||||||||||||||||| || | ||||| |||||||||| ||
Sbjct 72 TCAGAAAAATGGGAACCCTAGGACGAGCGATTCACACTGTGGGTAATCGGATTCGTGGAA 131
Query 61 CTGCCCAATCTCTTGATCGCGTTGGTTCTCTTCTTCAAGGAAGCCACCACATCGAGGAAC 120
|||||||| | | | |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 132 CTGCCCAAGCCCAAGCTCGCGTTGGTTCTCTTCTTCAAGGAAGCCACCACATCGAGAAAC 191
Query 121 ATCTGTCGAGGCATCGGTCGTTGATGACTGTGGTTGATAAATCTCCATTGGTGACTCCGA 180
||||||||||||||||| ||||||| ||||||| | || || | | |||| | |
Sbjct 192 ATCTGTCGAGGCATCGGACGTTGATTACTGTGGCTCCGAACGCTTC--T-GTGA-T-TG- 245
Query 181 GTGCTTCTGTTAC-GATCGGGAAAGGCTCG-GCAATTTCGTATGGATGTG-CTCGTCGAG 237
||| |||| | |||| ||||||||| | |||||||||| | ||| || ||| |
Sbjct 246 GTG---ATGTT-CAGATCAATAAAGGCTCGTTC-ATTTCGTATGCAAGTGTTTC-TCGTG 299
Query 238 ATTTGCAGTATTCTCGTGCAATTGGTGTTGGACAAGTGCGGCGATTTAGCGAAGATGTTT 297
||||||||||| |||||||||| || | ||||| || ||| ||||||||||||||||||
Sbjct 300 ATTTGCAGTATCCTCGTGCAATGGGAATGGGACAGGTCCGGAGATTTAGCGAAGATGTTT 359
Query 298 CTCACATGCCTGAAAT-GAAGGACTCTGATGTTCTGAATGCATTCAAAGACTTGATGGCT 356
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 360 CTCACATGCCTGAAATGGAA-GACTCTGATGTTCTGAATGCATTCAAAGACTTGATGGCT 418
Query 357 GCAGATTGGGCTGAGCTTCCTTCTGCTGTTGTTCGCA-ATGCCAAGAGCGCGATATCGAA 415
||||||||||||||||||||||||||||||||| | |||| || | ||||||||||||
Sbjct 419 GCAGATTGGGCTGAGCTTCCTTCTGCTGTTGTT-AAAGATGCTAAAACCGCGATATCGAA 477
Query 416 AAACACAGATGACAAGGCGGGGCAAGAGGCCTTGAAAAACGTGTTCCGAGCAGCTGAAGC 475
|||||||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||
Sbjct 478 AAACACAGATGACAAGGCAGGGCAAGAGGCTTTGAAAAATGTGTTCCGAGCAGCTGAAGC 537
Query 476 TGTTGAGGAATTTGGTGGGATTCTTACTTCGATTAAGATGGAAATCGATGATAGCATTGG 535
||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 538 TGTAGAGGAATTTGGTGGGATTCTCACTTCGATTAAGATGGAAATCGATGATAGCATTGG 597
Query 536 AATGAGTGGGGAGGGTGTGAAGCCTTTACCAAATGATATAACCGATGCGCTGCGTACTGC 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 598 AATGAGTGGGGAGGGTGTGAAGCCTTTACCAAATGATATAACCGATGCGCTGCGTACTGC 657
Query 596 TTATCAGAGGTATGCTGACTACCTAGATTCCTTTGAACCTGAAGAAGTTTACTTGAAGAA 655
|||||||||||||||||| || ||||| |||||||||||||||||||| |||||||||||
Sbjct 658 TTATCAGAGGTATGCTGAGTATCTAGACTCCTTTGAACCTGAAGAAGTCTACTTGAAGAA 717
Query 656 GAAGGTTGAGATGGAGTTGGGGACAAAGATGATCCACTTGAAGATGAGATGCAGCGGGCT 715
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 718 GAAGGTTGAGATGGAGTTGGGGACTAAGATGATCCACTTGAAGATGAGATGCAGCGGGCT 777
Query 716 TGGTTCTGAATGGGGAAAGGTTACTGTTCTTGGAACCTCAGGACTCTCGGGATCTTACGT 775
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 778 TGGTTCTGAATGGGGAAAGGTTACTGTTCTTGGAACCTCAGGACTCTCGGGATCTTACGT 837
Query 776 GGAGCAGAGGGCATAAAACGGAAAGAGAAGATCTTA-AAG-ACGTGCAAAACTTGTTATG 833
|||||| ||||| |||||| ||||||||||||| | || |||||| || |||||||||
Sbjct 838 GGAGCAAAGGGCCTAAAACAAAAAGAGAAGATCT-AGAATTACGTGCGAAGCTTGTTATG 896
Query 834 TTGTTATTGCGTTATTGTGTCTTAACACATAATAAAGGTCAATCTGACCAAAAGACATTA 893
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| |
Sbjct 897 TTGTTATTGCGTTATTTTGTCTTAGCACATAATAAAGGTCAATCTGACCAAAAGACAT-A 955
Query 894 TAAGGTGAGTTTGTTCATTGTTTCCTCCAAACGAAGCTTTCAAATTTAGAGCTTAACACC 953
| |||||||| |||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 956 TCAGGTGAGTCTGTTCATTGTTTCCTCCAAATGAAGCTTTAAAATTTAGAGCTTAACACC 1015
Query 954 AGTTGAAAAATAAACTCACAGCTCCAATTTGTGTTCATTTGTTACTGTTTCCTTACATGA 1013
| |||||||||||||||||| | ||||||||||||||||||||||||||||| ||||
Sbjct 1016 AATTGAAAAATAAACTCACA--TG-AATTTGTGTTCATTTGTTACTGTTTCCTTTTATGA 1072
Query 1014 GAGATCTTTTGTTTCTAATGATTCAACATTTTGAGCT 1050
|||||||||||||| ||||||||||| ||||||||||
Sbjct 1073 GAGATCTTTTGTTTATAATGATTCAATATTTTGAGCT 1109
> AT1G47410.1 | Symbols: | unknown protein; Has 26 Blast hits
to 26 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 26; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:17394765-17395673 FORWARD
LENGTH=788
Length=788
Score = 219 bits (118), Expect = 6e-56
Identities = 146/159 (92%), Gaps = 3/159 (2%)
Strand=Plus/Minus
Query 892 TATAAGGTGAGTTTGTTCATTGTTTCCTCCAAACGAAGCTTTCAAATTTAGAGCTTAACA 951
||| |||||||| |||||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 788 TATCAGGTGAGTCTGTTCATTGTTTCCTCCAAATGAAGCTTTAAAATTTAGAGCTTAACA 729
Query 952 CCAGTTGAAAAATAAACTCACAGCTCCAATTTGTGTTCATTTGTTACTGTTTCCTTACAT 1011
||| |||||||||||||||||| | ||||||||||||||||||||||||||||| ||
Sbjct 728 CCAATTGAAAAATAAACTCACA--T-GAATTTGTGTTCATTTGTTACTGTTTCCTTTTAT 672
Query 1012 GAGAGATCTTTTGTTTCTAATGATTCAACATTTTGAGCT 1050
|||||||||||||||| ||||||||||| ||||||||||
Sbjct 671 GAGAGATCTTTTGTTTATAATGATTCAATATTTTGAGCT 633
> AT1G47260.1 | Symbols: APFI, GAMMA CA2 | gamma carbonic anhydrase
2 | chr1:17321173-17323484 REVERSE LENGTH=1185
Length=1185
Score = 219 bits (118), Expect = 6e-56
Identities = 152/169 (90%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 5 AAAAATGGGAACCCTAGGACGAGCGATTCACTCTCTCGGTAACCGGATTCGTGCAACTGC 64
|||||||||||||||||||||||| ||| || || | |||||| ||||||||| |||||
Sbjct 134 AAAAATGGGAACCCTAGGACGAGCAATTTACACTGTGGGTAACTGGATTCGTGGAACTGG 193
Query 65 CCAATCTCTTGATCGCGTTGGTTCTCTTCTTCAAGGAAGCCACCACATCGAGGAACATCT 124
||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||||
Sbjct 194 TCAAGCTCTTGATCGCGTTGGTTCTCTTCTTCAAGGAAGTCACCGTATCGAGGAACATCT 253
Query 125 GTCGAGGCATCGGTCGTTGATGACTGTGGTTGATAAATCTCCATTGGTG 173
||||||||||||| ||||||||| |||| |||||||||| |||||||||
Sbjct 254 GTCGAGGCATCGGACGTTGATGAATGTGTTTGATAAATCACCATTGGTG 302
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51490000675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5