BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473890
Length=1080
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47480.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1594 0.0
> AT1G47480.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr1:17417579-17419432 FORWARD LENGTH=1125
Length=1125
Score = 1594 bits (863), Expect = 0.0
Identities = 1014/1085 (93%), Gaps = 18/1085 (2%)
Strand=Plus/Plus
Query 1 AAACATA-AGCATCAAAGCTTGACTCTCTTTTTCTCTCCCATGGAATCAA-AGAAGAAGC 58
||||||| | |||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 6 AAACATATA-CATCAAAGCTTGACTCTCTTTTTCTCTCCCATGGAATCAACA-AAGAAGC 63
Query 59 AAGTCTCGTTGGAATTACTTCCATGGTTAGTTGTTCACACCGATGGAACAATAGAGAGAC 118
||||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 64 AAGTCTCGTTGGAGCTACTTCCATGGTTAGTTGTCCACACCGATGGAACGGTAGAGAGAC 123
Query 119 TAGCGGGAACCGAAGTTTGTCCTCCCGGTTTAGATCCAGA-AACCGGGGTTTTCTCTAAA 177
||||||||||||| ||||||||||||||||| |||||| | |||||||||||||||||||
Sbjct 124 TAGCGGGAACCGAGGTTTGTCCTCCCGGTTTGGATCCA-ATAACCGGGGTTTTCTCTAAA 182
Query 178 GATATCATCATCGAACCGAAAACCGGTTTATCTGCCCGAATCTATCGACCCTTCTCGATT 237
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 GATATCATTATCGAACCGAAAACCGGTTTATCTGCCCGAATCTATCGACCCTTCTCGATT 242
Query 238 CAAACCGATCAGAA-ACTTCCTCTCGTGCTCTATTTTCATGGCGGTGCATTTCTCATCTC 296
||| ||| |||||| | |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 243 CAACCCGGTCAGAAGA-TTCCTCTCATGCTCTATTTTCATGGCGGTGCATTTCTCATCTC 301
Query 297 CTCCGCTTCCTTTCCTTGTTACCACACCAGTCTTAACAAATTTGTCAATCAGGCTAACGT 356
|||| ||||||| || | |||||||||||||||||||||| |||||||||||||||||||
Sbjct 302 CTCCACTTCCTTCCCCTCTTACCACACCAGTCTTAACAAAATTGTCAATCAGGCTAACGT 361
Query 357 CATCGCCGTCTCTGTCAATTACAGACTAGCACCAGAACATCCACTTCCTACCGCGTACGA 416
||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 362 CATAGCCGTCTCTGTCAATTACAGACTAGCACCAGAACATCCACTTCCTACAGCGTACGA 421
Query 417 AGACTCATGGACCGCGATAAAGACTATCCAAGCCATAAACGAGCCGTGGATCAACGACTA 476
|||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 422 AGACTCATGGACTGCGCTAAAGAATATCCAAGCCATAAACGAGCCGTGGATCAACGACTA 481
Query 477 CGCCGACTTGGACCGTTTATTCCTAGTGGGAGATAGCGCAGGAGCTAACATCTCACACCA 536
||||||||||||| ||||||||||||||||||||||||| |||||||| ||||| |||||
Sbjct 482 CGCCGACTTGGACAGTTTATTCCTAGTGGGAGATAGCGCGGGAGCTAATATCTCGCACCA 541
Query 537 CCTCGCATTTCGAGCCAAACAATCTGACCAAACCGTGAAAATCAAAGGCATTGGAATGAT 596
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 542 CCTCGCATTTCGAGCCAAACAATCTGACCAAACCTTGAAAATCAAAGGCATTGGAATGAT 601
Query 597 CCACCCATATTTTTGGGGAACACAACCTATTGGATCAGAGGTCAAAGATGAAGCGAGGaa 656
|||||||||||||||||| ||||||||||| ||| ||||| ||||||| |||||||||||
Sbjct 602 CCACCCATATTTTTGGGGGACACAACCTATCGGAGCAGAGATCAAAGACGAAGCGAGGAA 661
Query 657 aaaaaTGGTTGACGGATGGTGGGAATTCGTGTGCCCGTCTGAGAAAGGATCCGATGACCC 716
| ||||||| |||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 662 ACAAATGGTGGACGGATGGTGGGAATTCGTGTGCCCATCCGAGAAAGGATCCGATGACCC 721
Query 717 GTGGATTAATCCGTTTGCGGATGGGTCACCGGATCTTGAAGGGTTAGGGTGTGAGAGACT 776
||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |
Sbjct 722 GTGGATTAATCCGTTTGCGGACGGGTCACCGGATCTTGGAGGGTTAGGGTGTGAGAGAGT 781
Query 777 GATGATTACTGTGGCGGAGAAAGATATATTGAATGAGAGAGGGAAAATGTATTATGAAAG 836
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 782 GATGATTACTGTGGCGGAGAAAGATATATTGAATGAGAGAGGGAAGATGTATTACGAAAG 841
Query 837 ATTGGTGAAGAGTAAGTGGAGAGGAAAAGTTGAGATTATGGAGACAAAAGAGAGAGATCA 896
||||||||||||| |||||| |||||| ||||||||||||||||| ||||||| ||||||
Sbjct 842 ATTGGTGAAGAGTGAGTGGAAAGGAAAGGTTGAGATTATGGAGACGAAAGAGAAAGATCA 901
Query 897 TGTTTTTCATATTTTCGAGCCCGATTGTGATGAAGCTATGGAGATGGTACGACGCTTGGC 956
||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 902 TGTTTTTCATATTTTCGAGCCAGATTGTGATGAAGCTATGGAGATGGTACGATGCTTGGC 961
Query 957 TCTCTTTATAAACGAAGTGGAAGCTTGATATTAGTTTCGGATTCgttttgccaaaattta 1016
||||||||||||| |||| |||||||||||||| ||| | || || ||||||||||
Sbjct 962 TCTCTTTATAAACCAAGTTGAAGCTTGATATTA-TTT-G--TT--TT--GCCAAAATTTG 1013
Query 1017 atgg-ttttttcaatgtttgtataatttttaaatctttgttaatgttgttgttattgtgt 1075
|||| |||||| ||||||||||||||||||| || ||||||||||||||||||||||| |
Sbjct 1014 ATGGCTTTTTT-AATGTTTGTATAATTTTTACATGTTTGTTAATGTTGTTGTTATTGTCT 1072
Query 1076 tttCT 1080
|||||
Sbjct 1073 TTTCT 1077
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52911374430
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5