BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg473891

Length=543
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G47485.1 | Symbols:  | Encodes CEP1, a 15-amino-acid peptide...   763    0.0  


> AT1G47485.1 | Symbols:  | Encodes CEP1, a 15-amino-acid peptide, 
which is mainly expressed in the lateral root primordia. 
 When overexpressed or externally applied, CEP1 arrests root 
growth.  CEP1 is a candidate for a novel peptide plant hormone. 
| chr1:17422448-17423066 FORWARD LENGTH=619
Length=619

 Score =  763 bits (413),  Expect = 0.0
 Identities = 466/491 (95%), Gaps = 5/491 (1%)
 Strand=Plus/Plus

Query  56   CTCATGGGAATGTCGAACAGGTCAGTTTCTACATCTC-tttttttCCTCGCATTGGTGGT  114
            ||||||||||||||||| ||||||||||||||||| | |||||||||| |||||||||||
Sbjct  114  CTCATGGGAATGTCGAATAGGTCAGTTTCTACATC-CATTTTTTTCCTTGCATTGGTGGT  172

Query  115  TTTGCATGGAATTCAGGACACAGAAGAGAGACATTTGAAAACTACTTCGTTAGAGATTGA  174
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  173  TTTGCATGGAATTCAGGACACAGAAGAGAGACATTTGAAAACTACTTCGTTAGAGATTGA  232

Query  175  GGGAATTTATAAGAAAACTGAGGCCGAGAATCCTAGCATTGTGGTCACATATACACGACG  234
            |||||||||||| ||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct  233  GGGAATTTATAAAAAAACTGAGGCCGAGCATCCTAGCATTGTGGTCACATATACACGGCG  292

Query  235  TAGTGTCCTTCAAAAGGCGGTCATCGCACACCCCACAGATTTTAGGCCAACAAATCCTGG  294
            | |||||||||| |||| |||||| || ||||||||||| ||||||||||||||||| ||
Sbjct  293  TGGTGTCCTTCAGAAGGAGGTCATTGCCCACCCCACAGACTTTAGGCCAACAAATCCCGG  352

Query  295  AAACAGCCCAGGCGTTGGACACTCTCACGGGCGACACTGATTTGATCATATCATACGTCA  354
            ||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||
Sbjct  353  AAACAGCCCAGGCGTTGGACACTCTAACGGGCGACATTGATTCGATCATATCATACGTCA  412

Query  355  TAAATC-TATATCATATAGAAAATTATATGTA-TTTCATTTAGACTTGTCTTCTAATGCT  412
            | |||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||||||
Sbjct  413  T-AATCTTATATCATATAGAAAATTACATGTATTTTCATTCAGACTTGTCTTCTAATGCT  471

Query  413  AAAGAGGTGTTTGGACATCACTTTATCATTTCAATGTTTTGACAGTACTATGATCATTAT  472
            |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  472  AAAGGGGTGTTTGGACATCACTTTATCATTTCAATGTTTTGACAGTACTATGATCATTAT  531

Query  473  GTCTTTGTCGTGGGTTTGTTACACTGTCAGGTATTGTAAGATTATATAATGAATAAATTG  532
            ||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct  532  GTCTTTGTCGTGGGTTTGTTACACTGTCACGTATTGTAAGATTATATAATGAATGAATTG  591

Query  533  CTTTTAAAAAT  543
            |||||||||||
Sbjct  592  CTTTTAAAAAT  602



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 26021288146


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5