BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473892
Length=1718
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein... 2307 0.0
AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein 4... 2265 0.0
> AT1G47500.1 | Symbols: ATRBP47C', RBP47C' | RNA-binding protein
47C' | chr1:17432518-17435064 FORWARD LENGTH=1728
Length=1728
Score = 2307 bits (1249), Expect = 0.0
Identities = 1555/1694 (92%), Gaps = 56/1694 (3%)
Strand=Plus/Plus
Query 43 AAACACAACTCTCAAAACTTCCCCTGTTTGGTCCGAAACCG-AA--ACTAACCCTAA--T 97
||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
Sbjct 62 AAACACAACTCTCAAAACTTCCCCTGTTTGGTCCGAAACCGAAACTACTAACCCTAATCT 121
Query 98 CTCACATCACATCACACAA-CAC--CACATAGCCGCAAAATTTAATGGCAGACGTCAAGA 154
|||||||||||| | |||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 122 CTCACATCACAT-AAACAATCACTTCACATAGCCGCAAAATTTAATGGCAGACGTCAAGG 180
Query 155 TTCAATCCGAATCCGAATCCTCGGATTCTCAGCCCTTGGTGGTCGACAATCAACCATC-T 213
||||||||||||||||||||||||||||||| ||| | |||||||| ||||| || | |
Sbjct 181 TTCAATCCGAATCCGAATCCTCGGATTCTCATCCC-T--TGGTCGACTATCAATCA-CTT 236
Query 214 CCACCTCCTCCTCCACCGCCGCAACCACCGGTTGAAGAAGAAGAGAATCAACCAAAAACA 273
|||||| | ||| |||||||| ||||||||||||| ||| ||||||||||||||||||
Sbjct 237 CCACCT--T-ATCCTCCGCCGCATCCACCGGTTGAAGTAGAGGAGAATCAACCAAAAACA 293
Query 274 TCTCCGACT---CCGCCGCCACACTGGATGCGTTATCCACCACCGGTGTTAATGCCTCCC 330
||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 294 TCTCCGACTCCGCCGCCGCCACACTGGATGCGTTAT---CCACCGGTGTTAATGCCT--- 347
Query 331 CAGATGATGTACGCGCCGCCGCCACCTCAT-CCGTTCTCTCCTTATCATCAATATCCGAG 389
|||||||||||||||||||||||||| || |||||||| |||||||||||||||||||
Sbjct 348 CAGATGATGTACGCGCCGCCGCCACC-GATGCCGTTCTCACCTTATCATCAATATCCGAA 406
Query 390 TCACCA-C-C-TTCACCATCAATCTCGTGGTAATAACAACAATAAGTATCAAAACGCTTC 446
|||||| | | ||||||||||||||||||| | |||||| ||||||||||||
Sbjct 407 TCACCACCACTTTCACCATCAATCTCGTGG---T------AATAAGCATCAAAACGCTTT 457
Query 447 TAATGGTGAGAATAAAACCATTTGGGTTGGTGATTTGCATCATTGGATGGATGAGACTTA 506
|||||||||||||||||| |||||||||||||||||||| | |||||||||||| ||||
Sbjct 458 TAATGGTGAGAATAAAACTATTTGGGTTGGTGATTTGCAAAACTGGATGGATGAGGCTTA 517
Query 507 TCTTAATTCTTCTTTTGCTTCCGCTGACGGCGAGATACAGATTGTTTCGGTGAAGGTGAT 566
|||||||||| ||||| ||||||| || |||| | ||||||||||| ||||||||||
Sbjct 518 TCTTAATTCTGCTTTTACTTCCGC---CGAAGAGAGAGAGATTGTTTCGCTGAAGGTGAT 574
Query 567 TCGTAATAAGCACAATGGTTTATCAGAAGGATATGGATTTGTGGAGTTTGATTCCCATGA 626
|||||||||||||||||||| ||| |||||||||||||||||||||||||| ||||||||
Sbjct 575 TCGTAATAAGCACAATGGTTCATCGGAAGGATATGGATTTGTGGAGTTTGAGTCCCATGA 634
Query 627 TGTAGCTGATAAGGTTTTGCAGGAGTTTAATGGAACGACTATGCCTGATACTGAGCAACC 686
|||||||||||||||||||||||||||||| || || ||||||| ||||||| |||||
Sbjct 635 TGTAGCTGATAAGGTTTTGCAGGAGTTTAACGGGGCGCCTATGCCAAATACTGACCAACC 694
Query 687 TTTTCGTTTAAACTGGGCTAGTTTTAGCACCGGTGAGAAGCGGTTAGAGAACAATGGACC 746
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 695 TTTTCGTTTGAACTGGGCTAGTTTTAGCACCGGTGAGAAGCGGTTAGAGAACAATGGACC 754
Query 747 TGATCTCTCTAT-TTTCGTTGGGGATTTGGCGCCGGATGTTTCGGATACTTTGTTGCACG 805
|||||||||||| ||| ||||||||||||||||| |||||||||||| ||||||||||||
Sbjct 755 TGATCTCTCTATATTT-GTTGGGGATTTGGCGCCAGATGTTTCGGATGCTTTGTTGCACG 813
Query 806 AAATGTTCTCTGAGAAGTATCCGTCAGTTAAAGCTGCGAAAGTTGTCATTGATGCTAATA 865
| | |||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||
Sbjct 814 AGACCTTCTCTGAGAAGTATCCGTCGGTTAAAGCTGCCAAAGTTGTCCTTGATGCTAATA 873
Query 866 CTGGAAGATCAAAGGGGTATGGGTTTGTGAGGTTTGGTGATGAAAATGAAAGGACCAAAG 925
|||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 874 CTGGTAGATCAAAGGGGTATGGGTTTGTGAGGTTTGGAGATGAGAATGAAAGGACCAAAG 933
Query 926 CAATGACTGAGATGAATGGTGTTAAATGTTCTAGTAGAGCTATGCGTATCGGTCCTGCTA 985
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 934 CAATGACTGAGATGAATGGTGTTAAATGCTCTAGTAGAGCTATGCGTATCGGTCCTGCTA 993
Query 986 CCCCGAGGAAGACTACTGGTTATCAACAACAAGGTGGATACATGCCGAATGGTGCCTTGA 1045
|||| ||||| |||| |||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 994 CCCCAAGGAAAACTAATGGTTATCAACAACAAGGTGGATACATGCCGAGTGGTGCCTTTA 1053
Query 1046 CGCGTCCTGAAGGGGACACATTGAACACAACAATATTTGTTGGAGGACTTGACTCTAGTG 1105
||||| |||||||||||||| | ||||||||||||||||||||||| |||||||||||||
Sbjct 1054 CGCGTTCTGAAGGGGACACAATCAACACAACAATATTTGTTGGAGGGCTTGACTCTAGTG 1113
Query 1106 TCACTGACGACGACCTAAGGCAACCTTTCTCTGAATTCGGGGAAATAGTCTCTGTCAAGA 1165
||||||| || ||| ||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1114 TCACTGATGAAGACTTAAAGCAACCTTTCTCTGAATTCGGGGAAATAGTGTCTGTCAAGA 1173
Query 1166 TTCCTGTTGGCAAAGGATGCGGATTTGTTCAATTTGTTAACAGACCAAATGCAGAGGAGG 1225
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1174 TTCCTGTTGGTAAAGGATGCGGATTTGTTCAGTTTGTTAACAGACCAAATGCAGAGGAGG 1233
Query 1226 CTTTGGAAAAACTCAATGGAACTGTAATTGGCAAACAAACAGTTAGGCTGTCTTGGGGCC 1285
||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||
Sbjct 1234 CTTTGGAAAAACTCAATGGGACTGTAATTGGCAAACAAACAGTCCGGCTTTCTTGGGGCC 1293
Query 1286 GTAATCCAGCCAATAAGCAGCCTAGAGATAAGTATGGAAACCAATGGGTTGCGCCGTACT 1345
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1294 GTAATCCAGCCAATAAGCAGCCTAGAGATAAGTATGGAAACCAATGGGTTGATCCGTACT 1353
Query 1346 ACGGAGGACAGTATTACAATGGGTATGGATACATGGTACCGCAACCTGACCCGAGAATGT 1405
| |||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1354 ATGGAGGACAGTTTTACAATGGGTATGGATACATGGTACCTCAACCTGACCCGAGAATGT 1413
Query 1406 ATCCCGCTGCACCTTACGGAGGAGGGTATCCAATGTACGGTGGTCATCAGCAACAAGTTA 1465
|||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1414 ATCCTGCTGCACCTTAC---------TATCCAATGTACGGTGGTCATCAGCAACAAGTTA 1464
Query 1466 GCTGAGGAAACTAAAAGCTTAATCTGAGCATCTATCTATAGGACAACAAAAACTCACTCA 1525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1465 GCTGAGGAAACTAAAAGCTTAATCTGAGCATCTATCTATAGGACAACAAAAACTCACTCA 1524
Query 1526 GGTTAGGTGATGTTAGGAGGTACAAGGCAAAAATGGTTGGCTTCTTGTCTCTCCTTGAGT 1585
|||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||
Sbjct 1525 GGTTAGGTGATGTTAGGAGGTATAAGGCAAAAGTGGTTGGCTTCTTGTCTCTACTTGAGT 1584
Query 1586 TTAGGGTTTATCATCTAGTGGACATCGAATTTTGGTGGAAACCATACAGTAATTTAGGGG 1645
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| |
Sbjct 1585 TTAGGGTTTATCATCTTTTGGACATCGAATTTTGGTGGAAATCATACAGTAATTTAGGAG 1644
Query 1646 ACTTGGATTTGATTGATTAATTTGATTTGTTTCTTCTGATGCTTTT-GACTATTGAACTT 1704
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1645 ACTTGGATTTGATTGATTAATTTGATTTGTTTCTTCTGAT-CTTTTTGACTATTGAACTT 1703
Query 1705 ATTGATCAAAGAAG 1718
||||||||||||||
Sbjct 1704 ATTGATCAAAGAAG 1717
> AT1G47490.1 | Symbols: ATRBP47C, RBP47C | RNA-binding protein
47C | chr1:17424669-17427475 FORWARD LENGTH=1724
Length=1724
Score = 2265 bits (1226), Expect = 0.0
Identities = 1555/1703 (91%), Gaps = 66/1703 (4%)
Strand=Plus/Plus
Query 43 AAACACAACTCTCAAAACTTCCCCTGTTTGGTCCGAAACCGAAACTAACCCTAA--T--C 98
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| | |
Sbjct 16 AAACACAACTCTCAAAACTTGCCCTGTTTGGTCCGAAACCGAAACTAACCCTAATCTCAC 75
Query 99 -TCACATCACAT--C-A-CA---CA-A-CAC----CA---CATAGCCGCAAAATTTAATG 141
||||||||||| | | || || | ||| || ||||||||||||||||||||
Sbjct 76 ATCACATCACATAGCAATCACTTCACATCACAAAACACCTCATAGCCGCAAAATTTAATG 135
Query 142 GCAGACGTCAAGATTCAATCCGAATCCGAATCCTCGGATTCTCAGCCCTTGGTGGTCGAC 201
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 136 GCAGACGTCAAGATTCAATCCGAATCCGAATCCTCGGATTCTCA-TCC--AGTGGTCGAC 192
Query 202 AATCAACCATCTCCACCTCCTCCTCCACCGCCGCAACCA-CCGGTTG-AAGAAGAAGAGA 259
||||||||| || ||||| ||||| ||||||||| || |||| | ||||||| ||||
Sbjct 193 AATCAACCA---CCTCCTCCGCCTCCGCCGCCGCAA-CAGCCGG-CGAAAGAAGAGGAGA 247
Query 260 ATCAACCAAAAACATCTCCGACTCCGCCGCCACACTGGATGCGTTATCCACCACCGGTGT 319
||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 248 ATCAACCAAAAACATCTCCGACTCCGCCGCCACACTGGATGCGGTATCCACCAACGGTGA 307
Query 320 TAATGCCTCCCCAGATGATGTACGCGCCGCCGCCACCTCATCCGTTCTCTCCTTATCATC 379
|||| |||| ||||||||||||||||||||| |||||| | ||||||||||
Sbjct 308 TAATCCCTCATCAGATGATGTACGCGCCGCCG---------CCGTTCCCACCTTATCATC 358
Query 380 AATATCCGAGT---CACCACCTTCACCATCAATCTCGTGGTAATAACAACAATAAGTATC 436
| ||||||| | |||||||||||||||||||||||||| | |||||| |||
Sbjct 359 AGTATCCGAATCACCACCACCTTCACCATCAATCTCGTGG---T------AATAAGCATC 409
Query 437 AAAACGCTTCTAATGGTGAGAATAAAACCATTTGGGTTGGTGATTTGCATCATTGGATGG 496
||||||||| ||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 410 AAAACGCTTTTAATGGTGAGAATAAAACCATATGGGTTGGTGATTTGCATCACTGGATGG 469
Query 497 ATGAGACTTATCTTAATTCTTCTTTTGCTTCCGCTGACGGCGAGATACAGATTGTTTCGG 556
||||| ||||||||||||||||||||||||||| | || ||||| | ||||||||||||
Sbjct 470 ATGAGGCTTATCTTAATTCTTCTTTTGCTTCCG--G-CGACGAGAGAGAGATTGTTTCGG 526
Query 557 TGAAGGTGATTCGTAATAAGCACAATGGTTTATCAGAAGGATATGGATTTGTGGAGTTTG 616
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 527 TGAAGGTGATTCGTAATAAGAACAATGGTTTATCAGAAGGATATGGATTTGTGGAGTTTG 586
Query 617 ATTCCCATGATGTAGCTGATAAGGTTTTGCAGGAGTTTAATGGAACGACTATGCCTGATA 676
| |||||||||||||||||||||||||||| ||||||||| || ||||||||||| |||
Sbjct 587 AGTCCCATGATGTAGCTGATAAGGTTTTGCGGGAGTTTAACGGGACGACTATGCCAAATA 646
Query 677 CTGAGCAACCTTTTCGTTTAAACTGGGCTAGTTTTAGCACCGGTGAGAAGCGGTTAGAGA 736
|||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 647 CTGACCAACCTTTTCGTTTGAACTGGGCTAGTTTTAGCACCGGTGAGAAGCGGTTAGAGA 706
Query 737 ACAATGGACCTGATCTCTCTATTTTCGTTGGGGATTTGGCGCCGGATGTTTCGGATACTT 796
|||||||||||||||||||||||||||| ||||||||| | || ||||||||||||| ||
Sbjct 707 ACAATGGACCTGATCTCTCTATTTTCGTGGGGGATTTGTCACCAGATGTTTCGGATAATT 766
Query 797 TGTTGCACGAAATGTTCTCTGAGAAGTATCCGTCAGTTAAAGCTGCGAAAGTTGTCATTG 856
|||||||||| | |||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct 767 TGTTGCACGAGACCTTCTCTGAGAAGTATCCGTCGGTTAAAGCTGCGAAAGTTGTCCTTG 826
Query 857 ATGCTAATACTGGAAGATCAAAGGGGTATGGGTTTGTGAGGTTTGGTGATGAAAATGAAA 916
||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 827 ATGCTAATACTGGTAGGTCAAAGGGGTATGGGTTTGTGAGGTTTGGTGATGAGAATGAAA 886
Query 917 GGACCAAAGCAATGACTGAGATGAATGGTGTTAAATGTTCTAGTAGAGCTATGCGTATCG 976
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 887 GGACCAAAGCAATGACTGAGATGAATGGTGTTAAATGTTCTAGTAGAGCTATGCGCATCG 946
Query 977 GTCCTGCTACCCCGAGGAAGACTACTGGTTATCAACAACAAGGTGGATACATGCCGAATG 1036
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 947 GTCCTGCTACCCCGAGGAAGACTAATGGTTATCAACAACAAGGTGGATACATGCCGAATG 1006
Query 1037 GTGCCTTGACGCGTCCTGAAGGGGACACATTGAACACAACAATATTTGTTGGAGGACTTG 1096
|| |||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||
Sbjct 1007 GTACCTTGACGCGTCCTGAAGGGGACATAATGAACACAACAATATTTGTTGGAGGGCTTG 1066
Query 1097 ACTCTAGTGTCACTGACGACGACCTAAGGCAACCTTTCTCTGAATTCGGGGAAATAGTCT 1156
|||||||||||||||| || ||| ||| |||||||||| ||||||||||||||||||||
Sbjct 1067 ACTCTAGTGTCACTGATGAAGACTTAAAGCAACCTTTCAATGAATTCGGGGAAATAGTCT 1126
Query 1157 CTGTCAAGATTCCTGTTGGCAAAGGATGCGGATTTGTTCAATTTGTTAACAGACCAAATG 1216
||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1127 CTGTCAAGATTCCTGTTGGTAAAGGATGCGGATTTGTTCAGTTTGTTAACAGACCAAATG 1186
Query 1217 CAGAGGAGGCTTTGGAAAAACTCAATGGAACTGTAATTGGCAAACAAACAGTTAGGCTGT 1276
|||||||||||||||| ||||| ||||| ||||||||||| |||||||||||| |||| |
Sbjct 1187 CAGAGGAGGCTTTGGAGAAACTAAATGGGACTGTAATTGGAAAACAAACAGTTCGGCTTT 1246
Query 1277 CTTGGGGCCGTAATCCAGCCAATAAGCAGCCTAGAGATAAGTATGGAAACCAATGGGTTG 1336
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1247 CTTGGGGACGTAATCCCGCCAATAAGCAGCCTAGAGATAAGTATGGAAACCAATGGGTTG 1306
Query 1337 CGCCGTACTACGGAGGACAGTATTACAATGGGTATGGATACATGGTACCGCAACCTGACC 1396
|||||||| |||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1307 ATCCGTACTATGGAGGACAGTTTTACAATGGGTATGGATACATGGTACCTCAACCTGACC 1366
Query 1397 CGAGAATGTATCCCGCTGCACCTTACGGAGGAGGGTATCCAATGTACGGTGGTCATCAGC 1456
|||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1367 CGAGAATGTATCCCGCTGCACCTTAC---------TATCCAATGTACGGTGGTCATCAGC 1417
Query 1457 AACAAGTTAGCTGAGGAAACTAAAAGCTTAATCTGAGCATCTATCTATAGGACAACAAAA 1516
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1418 AACAAGTTAGCTGAGGAAACTAAAAGCTTAATCTGAGCATCTATCTATAGGACAACAAAA 1477
Query 1517 ACTCACTCAGGTTAGGTGATGTTAGGAGGTACAAGGCAAAAATGGTTGGCTTCTTGTCTC 1576
||||||||||||||||||||||||||| | ||||||||||||| ||||||||||||||||
Sbjct 1478 ACTCACTCAGGTTAGGTGATGTTAGGAAGAACAAGGCAAAAATTGTTGGCTTCTTGTCTC 1537
Query 1577 TCCTTGAGTTTAGGGTTTATCATCTAGTGGACATCGAATTTT-GGTGGAAACCATACAGT 1635
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1538 TCCTTGAGTTTAGGGTTTATCATCTAGTGGACATCGAATTTTTGGTGGAAACCATACAGT 1597
Query 1636 AATTTAGGGGACTTGGATTTGATTGATTAATTTGATTTGTTTCTTCTGATGCTTTTGACT 1695
||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 1598 AATTTAGGGGACTTGGATTTGATTGATTAATTTTATTTGTTTCTTCTGATACTTTTGACT 1657
Query 1696 ATTGAACTTATTGATCAAAGAAG 1718
|| ||| ||||||||||| ||||
Sbjct 1658 ATGGAAGTTATTGATCAA-GAAG 1679
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84939322140
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5