BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg473897

Length=392
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G47540.2 | Symbols:  | Scorpion toxin-like knottin superfami...   625    1e-178


> AT1G47540.2 | Symbols:  | Scorpion toxin-like knottin superfamily 
protein | chr1:17455533-17456156 REVERSE LENGTH=479
Length=479

 Score =  625 bits (338),  Expect = 1e-178
 Identities = 377/395 (95%), Gaps = 5/395 (1%)
 Strand=Plus/Plus

Query  1    GAAGTTGGCCATGACAACGAAGTCAGTTTCTACCTTCGCCATCTATTTCATCCTCGTTTT  60
            ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct  1    GAAGTTGGCCATGGCAACGAAGTCAGTTTCTACCTTCGCCATCTTTTTCATCCTCGTTTT  60

Query  61   GGTTATCTTTGCAGAAACGCCTGAGATAGAAGCGTATGATAGGAAGTGCCTGAAAGAATA  120
            || ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GGCTATCTTTGCAGAAACTCCTGAGATAGAAGCGTATGATAGGAAGTGCCTGAAAGAATA  120

Query  121  CGGCGGCGATGTGGGTTTCAGCTACTGTGCACCTCGAATATTCCCGACGTTCTGTGATCA  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  121  CGGCGGCGATGTGGGTTTCAGCTACTGTGCACCTCGAATATTCCCGACGTTCTGTGATCA  180

Query  181  GAACTGCCGTAAGAACAAGGGCGCGAAAGGTGGAATATGCCGTTGGGAAGAGAACAACGC  240
            |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct  181  GAACTGCCGTAAGAACAAGGGCGCGAAAGGTGGAGTATGCCGTTGGGAAGAGAACAACGC  240

Query  241  TATTGGTGTTAAATGTTTATGCAACTTCTGCAGCGAGGAGCCTTCTTAT-AAGATTCTAA  299
            ||||||||||||||| ||||||||||||||||||||||| || ||| || || | |||||
Sbjct  241  TATTGGTGTTAAATGCTTATGCAACTTCTGCAGCGAGGAACCCTCTGATCAA-ACTCTAA  299

Query  300  GTCGTATTTGAATCTTGCATGTGTCATGGTTTGTGTAACAA--CAAAGGTAAATGGTCCA  357
            |||||||||||||||||||||||||||||||||||||||||  ||| |||||||||||||
Sbjct  300  GTCGTATTTGAATCTTGCATGTGTCATGGTTTGTGTAACAAATCAA-GGTAAATGGTCCA  358

Query  358  CGTAATAATATAATAATGAATAAGTGAAATAAAGA  392
             |||| |||||||||||||||||| ||||||||||
Sbjct  359  AGTAACAATATAATAATGAATAAGCGAAATAAAGA  393



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18498531632


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5