BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473901
Length=1757
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47570.1 | Symbols: | RING/U-box superfamily protein | chr1... 2490 0.0
> AT1G47570.1 | Symbols: | RING/U-box superfamily protein | chr1:17478655-17483502
FORWARD LENGTH=1938
Length=1938
Score = 2490 bits (1348), Expect = 0.0
Identities = 1625/1751 (93%), Gaps = 49/1751 (3%)
Strand=Plus/Plus
Query 1 TCAAATTGGTAACGTACGG--TCATTTGACATATTCCGGTGAGTGCAGACTGTTACACAA 58
|||||| |||||||||||| |||||||| ||||||||||| ||||| || ||||||| |
Sbjct 13 TCAAATCGGTAACGTACGGTCTCATTTGAGATATTCCGGTGTGTGCA-ACAGTTACACCA 71
Query 59 ATCAAACC-TTTCTTTaaaaaattaaaaaTGGAGAGATTCTTCAACAGAGAGAAACCCT- 116
|| ||||| |||| |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 72 ATTAAACCTTTTCCTTAAAAAA-TAAAAATGGAGAGATTCTTCTACAGAGAGAAACCCTA 130
Query 117 -AGACCAATAGAGGAATCGTGCTTACCACTCTCTTTCTCGAATCATCTTCTTCTTCGCGA 175
||||||| | ||||||||||| || ||||||||||||||||||||||||||| ||||||
Sbjct 131 AAGACCAAAATAGGAATCGTGCCTATCACTCTCTTTCTCGAATCATCTTCTTCCTCGCGA 190
Query 176 CGAGACTTTC-TTAGTTTCTGTTGAAATCTCTTATTTTCGAGT-ATCTACTTTGAAATTT 233
||||||| | |||||||||||||||||||||||||| || || || ||||||||||||
Sbjct 191 AGAGACTTCCTTTAGTTTCTGTTGAAATCTCTTATTTGCG-GTGATGAACTTTGAAATTT 249
Query 234 GATTCCAGAAGTCCGAT---GACGACGGCGGAAACTGGACAATCCTCTGGTTCTAAAACC 290
||||||||||||||||| |||||||||||||||||| |||||||||||||| ||| ||
Sbjct 250 GATTCCAGAAGTCCGATGACGACGACGGCGGAAACTGGGCAATCCTCTGGTTCGAAACCC 309
Query 291 TC---TGATGATGCATGGGCTAAACTGTCAGTATTGTTTCCTTTTCCTCTGGACACTAGA 347
|| ||||||||||||||| |||| | | | ||||||||||||| |||
Sbjct 310 TCTGATGATGATGCATGGGCCAAAC--T--G----G-------TTCCTCTGGACACCAGA 354
Query 348 TTCTCAGACATTGAGATTAAGTGCAATGATATGGTAATATGCTCTGAGATTAAACCGTCT 407
||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 355 TTCTCTGACATTGAGATTAGGTGCAATGATATGGTAATATGCTCTGAGATTAAACCGTCT 414
Query 408 TCCGTAGAGAGACATGAATGGTGCAGAATAACTAAGAATTTGGGTCAAGGTTCTGCTACT 467
||| | || | ||||||||||||||||||||||||||||||||||||| ||||||| |||
Sbjct 415 TCCCTGGAAAAACATGAATGGTGCAGAATAACTAAGAATTTGGGTCAAAGTTCTGCCACT 474
Query 468 ATACATAATAAGAGTTCGGATGTTATACTTGTTGATGAGGCTGTCATCCCGATAGATGGT 527
|||||||||||||||||||||| |||||||||||| ||||||| |||||| |||||||
Sbjct 475 ATACATAATAAGAGTTCGGATGCTATACTTGTTGACAAGGCTGTTGTCCCGAAAGATGGT 534
Query 528 GCTGTCGATATCATTAGTGGATCTGAAATTGTTCCTGGCCCTGAAGGACAAGGTTACTTG 587
||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 535 GCTGTTGATATCATTAGTGGATCTGAAATTGTTCCTGGCCCTGAAGAACAAGGGTACTTG 594
Query 588 CAGTACAGATTTACAATAATGCCAGCTCCAGAATCCAGAACTCAGCTATTACAGATTTTA 647
||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct 595 CAGTACAGATTTACAATAATGCCTGCTCCAGAATCCAGAACCCAGCTATTACAGATTTCC 654
Query 648 ATAGACCCCGAACATGCAAAATGCAGTATCTGCTTAAACATATGGCACGATGTTGTCACA 707
||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 655 ATAGATCCTGAACATGCAAAATGCAGTATCTGCTTAAACATATGGCATGATGTTGTCACA 714
Query 708 GCTGCACCTTGCCTTCATAATTTCTGTAATGGCTGTTTTTCAGAATGGATGCGGAGATCG 767
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 GCTGCACCTTGCCTTCATAATTTCTGTAATGGCTGTTTTTCAGAATGGATGCGGAGATCG 774
Query 768 GAGGAAAAACATAAACATGTGTTATGTCCACAGTGCAGAACAACAGTACAATATGTGGGG 827
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 GAGGAAAAACATAAACATGTGTTATGTCCACAGTGCAGAACAACAGTACAATATGTGGGA 834
Query 828 AAAAATCATTTTCTAAAAAACATACAAGAGGATATATTAAAAGTGGATGCTGCACTGAGA 887
|||||||||||||| || |||||||||||||| ||||||||||||||||||||||||||
Sbjct 835 AAAAATCATTTTCTGAAGAACATACAAGAGGAAATATTAAAAGTGGATGCTGCACTGAGG 894
Query 888 CGACCAGCTGAAGATATTGCAGTGTTGGACTCATCTGCATCGATACAATCAAATCTTATC 947
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 895 CGACCAGCTGAAGATATTGCAGTGTTGGACTCATCTGCATCGATACAATCAAATCTTATC 954
Query 948 ATTGGGAGCAAGAGAAAACGTCGTTTGAATATGCCCT-CGCCCACACTTGAAGAAAGAGA 1006
||||||||||||||||||||||| ||||||||||| | ||||||||| ||||||||||||
Sbjct 955 ATTGGGAGCAAGAGAAAACGTCGATTGAATATGCC-TGCGCCCACACATGAAGAAAGAGA 1013
Query 1007 TAACTTGCGTTTGCAATGCCCACAATGTGTTGCTAATATTGG-GAGCTATCGGTGTGAAC 1065
|| ||||||||||||||||||||||||||||||||||||||| | | |||||||||||||
Sbjct 1014 TAGCTTGCGTTTGCAATGCCCACAATGTGTTGCTAATATTGGTG-GTTATCGGTGTGAAC 1072
Query 1066 ATCATGGTGCGCATCTGCAATGTCACCTGTGTCAAGGAATGATGCCCTTTAGAGCCAATC 1125
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1073 ATCATGGTGCACATCTGCAATGCCACCTGTGTCAAGGAATGATGCCCTTTAGAGCCAATC 1132
Query 1126 TCCAAGTGCCGTTACACTGCAAGGGATGTGATAGGCCGTTTTGCGGTGCTTACTGGAGTT 1185
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1133 TCCAAGTGCCGTTACACTGCAAGGGATGCGATAGGCCGTTTTGCGGTGCTTACTGGAGTT 1192
Query 1186 CCGAGAATGTTACACAAGGTGTATCTAGTCCAGTCTGCGGTCGCGAAACTTTCAGACCTA 1245
|||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||
Sbjct 1193 CCGAGAATGTTACACAAGGTGTATCTGGTCCAGTCTGCGTTCGCGAAACTTTTAGACCTA 1252
Query 1246 TCTCGGAACGCACAATTACAAGGATTCCATTCATAACCCATGAAATGAATCGCCATGAAC 1305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1253 TCTCGGAACGCACAATTACAAGGATTCCATTCATAACCCATGAAATGAATCGCCATGAAC 1312
Query 1306 AAGATATAACGCAAAGATGCATTACCCATATGGGGAAAACTGTGCCGGATGTTGTAGCAG 1365
||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 1313 AAGATATAACGCAAAGATGCATTGCCCATATGGAGAAAACTGTGCCGGATGTTGTAGCAG 1372
Query 1366 AGTGGCTCAGGCTTTTCAACAATAGAGAAATCGACCGCTCGAGAATGCCTCTCAATCATG 1425
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1373 AGTGGCTCAGGCTTTTCAACAATAGAGAAATAGACCGCTCGAGAATGCCTCTGAATCATG 1432
Query 1426 CTGAGATGATAACTGCATCAACACATGTTTGCAATGATTGTTATGATAAGCTGGTGGGGT 1485
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1433 CTGAGACGATAACTGCATCAACACATGTTTGCAATGATTGTTATGATAAGCTGGTGGGAT 1492
Query 1486 TCCTTTTATACTGGTTCCGGATAACACTGCCGAGAGATCATTTGCCAGCGGATGTAG-GA 1544
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
Sbjct 1493 TCCTTTTATACTGGTTCCGGATAACACTGCCGAGAAATCATTTGCCAGCGGATGTAGCG- 1551
Query 1545 GCGAGAGAAGATTGTTGGTATGGATACGCATGTAGGACACAACACCACAACGAAGAACAT 1604
|| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1552 GCTAGGGAAGATTGTTGGTATGGATACGCATGTAGGACACAACACCACAACGAAGATCAT 1611
Query 1605 GCTCGTAAACGTAACCATGTATGTCGTCCTACCAGAGGGAACCATCACTTTTAGTCCGCA 1664
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1612 GCTCGTAAACGTAACCATGTATGTCGCCCTACCAGAGGGAACCATCACTTTTAGTCCGCT 1671
Query 1665 TTTCGTCTTTCCTCGACAAGCTTTTGATTGTATTTTGGGATAATCTCTGTATGAGTACT- 1723
|||| ||||| || |||||||| |||||||||||| | |||||||||||| |
Sbjct 1672 TTTCATCTTT--TC-------TTTTGATTATATTTTGGGATA-T-TCTGTATGAGTAGTT 1720
Query 1724 AGAAACTGTTC 1734
|||||||||||
Sbjct 1721 AGAAACTGTTC 1731
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86897143395
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5