BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473903 Length=1295 Score E Sequences producing significant alignments: (Bits) Value AT1G47580.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 1109 0.0 AT1G47578.1 | Symbols: | Biotin/lipoate A/B protein ligase fam... 518 7e-146 AT4G31050.1 | Symbols: | Biotin/lipoate A/B protein ligase fam... 355 5e-97 > AT1G47580.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:17485650-17486463 FORWARD LENGTH=814 Length=814 Score = 1109 bits (600), Expect = 0.0 Identities = 724/784 (92%), Gaps = 7/784 (1%) Strand=Plus/Plus Query 517 ATTGACGAGAAAAGGATGGCACTGGAAACTGCTTTCTCCATGAGTTTTTGCTCCTTCCCT 576 |||||| | ||| ||||||| |||||| ||||||||||||||||||||||||||||| || Sbjct 4 ATTGACCACAAAGGGATGGCTCTGGAAGCTGCTTTCTCCATGAGTTTTTGCTCCTTCTCT 63 Query 577 GTCCCCAAGGCAATCTTCTTTGAGAGAGAAACTTCATCTTTTCAACGAGTCATCTCGAGA 636 ||||| || |||||||||| |||||||||||||||||||||||||||| ||| ||||||| Sbjct 64 GTCCCTAAAGCAATCTTCTGTGAGAGAGAAACTTCATCTTTTCAACGAATCACCTCGAGA 123 Query 637 GCAAAGGGAATTGCCGGTGAGGGTCAAGTTGAAAGCTCTGATGGAATTGAGACTCAAGTC 696 |||||||||||||| |||||| |||||||| |||||||||||||| |||||||||||||| Sbjct 124 GCAAAGGGAATTGCGGGTGAGAGTCAAGTTCAAAGCTCTGATGGAGTTGAGACTCAAGTC 183 Query 697 AAGGAAACTGCTCACAAAGTATTTGATAAACTGCCTGAAAGAAGTGTAGATACTTGGAGT 756 ||||||||| ||| ||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 184 AAGGAAACTTCTCCCAAAGTATTTGATAAACTGCCTGAAAGAAATTTAGATACTTGGAGC 243 Query 757 GGTGGCAGAGTAACAGCAAAAGAACTTTCAGGCTCAGTAGTAAGAAACACGGTACGAAAA 816 |||||||||| |||||||| || ||||||||| ||||||||||||||||| ||||||||| Sbjct 244 GGTGGCAGAGAAACAGCAAGAGGACTTTCAGGTTCAGTAGTAAGAAACACTGTACGAAAA 303 Query 817 GATACTACTTTACGACATATCTCACCTTCTAGTCATTCAACAAAGGTTAGAGGAGATAAG 876 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 304 GATACTACTTTACGACATATCTCACCTTCTAGTCATTCAACAAAGGTTAGAGGAGATAAG 363 Query 877 CCGGAGATTTTAGG---TGAGAAGAAAGCTATTGTAGATAGAAGCAAGGCCTACGTAAAG 933 || ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 364 CCAGAGATTTCAGGGGGTGAGAAGAAAGCTATTGTAGATAGAAGCAAGGCCTACGTAAAG 423 Query 934 CTGAAGTCTTTAGGAAAAGAAGTGAGAGACGCAGGCTATGTACCAGAGACGAAGTACGTT 993 ||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 424 CTGAAATCTTTAGGGAAAGAAGTGAGAGACGCAGGCTATGTACCAGAGACTAAGTATGTT 483 Query 994 CTTCATGATATTGATGAAGAAGCTAAAGAGAAAGCATTGATGCATCACAGTGAACGATTA 1053 ||||| || |||||||||||||||||||||||||| ||||||||||| |||||||| ||| Sbjct 484 CTTCACGACATTGATGAAGAAGCTAAAGAGAAAGCCTTGATGCATCATAGTGAACGGTTA 543 Query 1054 GCTATTGCTTTCGGGCTTATAAACACGCCTCCAGGGACAACGATAAGGGTGATGAAGAAT 1113 ||||||||||||||| |||||||||| ||||||||||| || |||||||||||||||||| Sbjct 544 GCTATTGCTTTCGGGATTATAAACACTCCTCCAGGGACGACAATAAGGGTGATGAAGAAT 603 Query 1114 CTGAGAATATGCGGAGATTGCCACAACTTCATAAAGATACTATCGAGTATTGAAGATAGA 1173 ||||| ||||| ||||||||||| ||||||||||||||| |||||||||| ||||||||| Sbjct 604 CTGAGGATATGTGGAGATTGCCATAACTTCATAAAGATATTATCGAGTATCGAAGATAGA 663 Query 1174 GAGATCATTGTAAGAGATAACAAGAGGTTTCATCATTTTAGAGATGGTAGCTGCTCTTGT 1233 ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| Sbjct 664 GAGATCATTGTAAGAGATAACAAGAGGTTCCATCATTTTAGAGATGGTAACTGCTCTTGT 723 Query 1234 GGAGATTATTGGTAGACTTTTGTATGAAAATATGTGATTTT-TAACACA-TTGATACTTA 1291 ||||||||||||||||||||||||| |||| |||||| || || || | || ||||| | Sbjct 724 GGAGATTATTGGTAGACTTTTGTATTAAAAGATGTGAAATTCTA-CAAAGTT-ATACTAA 781 Query 1292 ACTA 1295 |||| Sbjct 782 ACTA 785 > AT1G47578.1 | Symbols: | Biotin/lipoate A/B protein ligase family | chr1:17484365-17485470 FORWARD LENGTH=843 Length=843 Score = 518 bits (280), Expect = 7e-146 Identities = 334/361 (93%), Gaps = 0/361 (0%) Strand=Plus/Plus Query 110 AGCTTGAGCAGGTAGTCATTCGTGTTCTTTCTTCGGCTTTCTCCATCAACGCTACTCGTC 169 |||||||| | ||||| |||||||||||||||||||||||| ||||||| ||| |||||| Sbjct 467 AGCTTGAGGAAGTAGTTATTCGTGTTCTTTCTTCGGCTTTCGCCATCAATGCTTCTCGTC 526 Query 170 TTGACGGTTTAACTGGAGTTTGGGTTGGTAACCAAAAAGTGGCGGCGTTAGGTATTCGTG 229 | |||||||| ||||||||||||||||| ||| ||||| |||||||| |||||||||||| Sbjct 527 TCGACGGTTTTACTGGAGTTTGGGTTGGCAACAAAAAAATGGCGGCGATAGGTATTCGTG 586 Query 230 TGTCGAAATGGATGACATATCATGGTCTAGCTCTTAACGTTACAACAGATTTAACACCTT 289 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 587 TGTCGAAATGGATGACATATCATGGTCTAGCTCTTAATGTTACAACAGATTTAACACCCT 646 Query 290 TTAACTTGATAGTTCCATGTGGGATAAGAAACCGCGGGGTTGGAAGTGTAAAGGGTTTGA 349 |||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||||||| Sbjct 647 TTAACTCCATAGTTCCATGTGGGATAAGGAACCGTGGGGTTGGAAGCGTAAAGGGTTTGA 706 Query 350 TTGAGGATGGAGAACATTATGATAAGCTCGACGATTTGCAGTTGTTAGATATAGCTCATG 409 |||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||| Sbjct 707 TTGAGGATGGAGAACATTATAATAAGCTTGAAGATTTGCAGTTGTTAGATATAGCTCATG 766 Query 410 AGTCGTTATTAAAGGAATTCTCTGAAGTTTTCCAGCTTCAAATCGAAAAGCAAACAGGAT 469 |||||||| |||||||||||||||||||||| |||||||| || ||||||||||||| || Sbjct 767 AGTCGTTACTAAAGGAATTCTCTGAAGTTTTTCAGCTTCAGATGGAAAAGCAAACAGTAT 826 Query 470 T 470 | Sbjct 827 T 827 Score = 182 bits (98), Expect = 1e-44 Identities = 109/114 (96%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 1 ATGGGAACTGGAAG-TACAGAGGATTATCTCAATTTCGACATAAAGAATGCTCCTTTCGA 59 |||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 292 ATGGGAACTGGAAGCT-CAGAGAATTATCTCAATTTCGACATAAAGAATGCTCCTTTCGA 350 Query 60 TGTTTATAGAACTGAACGTGGTGGTGAAGTTACTTACCATGGTCCTGGTCAGCT 113 |||||||||||| ||||||||||||||||||||||| ||||||||||||||||| Sbjct 351 TGTTTATAGAACAGAACGTGGTGGTGAAGTTACTTATCATGGTCCTGGTCAGCT 404 > AT4G31050.1 | Symbols: | Biotin/lipoate A/B protein ligase family | chr4:15114250-15115633 FORWARD LENGTH=1122 Length=1122 Score = 355 bits (192), Expect = 5e-97 Identities = 305/359 (85%), Gaps = 9/359 (3%) Strand=Plus/Plus Query 111 GCTTG-AGCAGGTAGTCATTCGTGTTCTTTCTTCGGCTTTCTCCATCAACGCTACTCGTC 169 ||||| || || | ||||| ||||| ||||| || |||||||||| || ||| |||||| Sbjct 557 GCTTGAAG-AGATTGTCATCCGTGTGCTTTCCTCAACTTTCTCCATTAAAGCTTCTCGTC 615 Query 170 TTGACGGTTTAACTGGAGTTTGGGTTGGTAACCAAAAAGTGGCGGCGTTAGGTATTCGTG 229 |||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| Sbjct 616 TTGACGGTTTAACTGGAGTTTGGGTTGGCAACCAAAAAGTGGCGGCGATAGGTATTCGTG 675 Query 230 TGTCGAAATGGATGACATATCATGGTCTAGCTCTTAACGTTACAACAGATTTAACACCTT 289 ||||||||||||| |||||||||||| |||||||||| || || |||||| ||||||| | Sbjct 676 TGTCGAAATGGATAACATATCATGGTTTAGCTCTTAATGTCACTACAGATCTAACACCAT 735 Query 290 TTAACTTGATAGTTCCATGTGGGATAAGAAACCGCGGG-GTTGGAAGTGTAAAGGGTTTG 348 | |||| |||||||||||||||||| ||| |||| | ||||||| ||||||| ||| Sbjct 736 TCAACTGGATAGTTCCATGTGGGATTAGAGACCG-GAAAGTTGGAAACATAAAGGGCTTG 794 Query 349 ATTGAGGATGGAGAACATTATGATAAGCTCGACGATTTGCAG-TTGTTAGATATAGCTCA 407 |||| ||||||||||| || | | | || |||||| || ||| | ||||||| ||| Sbjct 795 CTTGAAGATGGAGAACACG--GA-ATGGTTGATGATTTG-AGGTTGATCGATATAGTTCA 850 Query 408 TGAGTCGTTATTAAAGGAATTCTCTGAAGTTTTCCAGCTTCAAATCGAAAAGCAAACAG 466 ||||| ||| |||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 851 CGAGTCTTTACTAAAGGAATTCTCTGAAGCTTTCCAGCTTCAGATCGAAAAGCAAACAG 909 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 63704491605 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5