BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473903
Length=1295
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47580.1 | Symbols: | Pentatricopeptide repeat (PPR) superf... 1109 0.0
AT1G47578.1 | Symbols: | Biotin/lipoate A/B protein ligase fam... 518 7e-146
AT4G31050.1 | Symbols: | Biotin/lipoate A/B protein ligase fam... 355 5e-97
> AT1G47580.1 | Symbols: | Pentatricopeptide repeat (PPR) superfamily
protein | chr1:17485650-17486463 FORWARD LENGTH=814
Length=814
Score = 1109 bits (600), Expect = 0.0
Identities = 724/784 (92%), Gaps = 7/784 (1%)
Strand=Plus/Plus
Query 517 ATTGACGAGAAAAGGATGGCACTGGAAACTGCTTTCTCCATGAGTTTTTGCTCCTTCCCT 576
|||||| | ||| ||||||| |||||| ||||||||||||||||||||||||||||| ||
Sbjct 4 ATTGACCACAAAGGGATGGCTCTGGAAGCTGCTTTCTCCATGAGTTTTTGCTCCTTCTCT 63
Query 577 GTCCCCAAGGCAATCTTCTTTGAGAGAGAAACTTCATCTTTTCAACGAGTCATCTCGAGA 636
||||| || |||||||||| |||||||||||||||||||||||||||| ||| |||||||
Sbjct 64 GTCCCTAAAGCAATCTTCTGTGAGAGAGAAACTTCATCTTTTCAACGAATCACCTCGAGA 123
Query 637 GCAAAGGGAATTGCCGGTGAGGGTCAAGTTGAAAGCTCTGATGGAATTGAGACTCAAGTC 696
|||||||||||||| |||||| |||||||| |||||||||||||| ||||||||||||||
Sbjct 124 GCAAAGGGAATTGCGGGTGAGAGTCAAGTTCAAAGCTCTGATGGAGTTGAGACTCAAGTC 183
Query 697 AAGGAAACTGCTCACAAAGTATTTGATAAACTGCCTGAAAGAAGTGTAGATACTTGGAGT 756
||||||||| ||| ||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 184 AAGGAAACTTCTCCCAAAGTATTTGATAAACTGCCTGAAAGAAATTTAGATACTTGGAGC 243
Query 757 GGTGGCAGAGTAACAGCAAAAGAACTTTCAGGCTCAGTAGTAAGAAACACGGTACGAAAA 816
|||||||||| |||||||| || ||||||||| ||||||||||||||||| |||||||||
Sbjct 244 GGTGGCAGAGAAACAGCAAGAGGACTTTCAGGTTCAGTAGTAAGAAACACTGTACGAAAA 303
Query 817 GATACTACTTTACGACATATCTCACCTTCTAGTCATTCAACAAAGGTTAGAGGAGATAAG 876
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 GATACTACTTTACGACATATCTCACCTTCTAGTCATTCAACAAAGGTTAGAGGAGATAAG 363
Query 877 CCGGAGATTTTAGG---TGAGAAGAAAGCTATTGTAGATAGAAGCAAGGCCTACGTAAAG 933
|| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 CCAGAGATTTCAGGGGGTGAGAAGAAAGCTATTGTAGATAGAAGCAAGGCCTACGTAAAG 423
Query 934 CTGAAGTCTTTAGGAAAAGAAGTGAGAGACGCAGGCTATGTACCAGAGACGAAGTACGTT 993
||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 424 CTGAAATCTTTAGGGAAAGAAGTGAGAGACGCAGGCTATGTACCAGAGACTAAGTATGTT 483
Query 994 CTTCATGATATTGATGAAGAAGCTAAAGAGAAAGCATTGATGCATCACAGTGAACGATTA 1053
||||| || |||||||||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 484 CTTCACGACATTGATGAAGAAGCTAAAGAGAAAGCCTTGATGCATCATAGTGAACGGTTA 543
Query 1054 GCTATTGCTTTCGGGCTTATAAACACGCCTCCAGGGACAACGATAAGGGTGATGAAGAAT 1113
||||||||||||||| |||||||||| ||||||||||| || ||||||||||||||||||
Sbjct 544 GCTATTGCTTTCGGGATTATAAACACTCCTCCAGGGACGACAATAAGGGTGATGAAGAAT 603
Query 1114 CTGAGAATATGCGGAGATTGCCACAACTTCATAAAGATACTATCGAGTATTGAAGATAGA 1173
||||| ||||| ||||||||||| ||||||||||||||| |||||||||| |||||||||
Sbjct 604 CTGAGGATATGTGGAGATTGCCATAACTTCATAAAGATATTATCGAGTATCGAAGATAGA 663
Query 1174 GAGATCATTGTAAGAGATAACAAGAGGTTTCATCATTTTAGAGATGGTAGCTGCTCTTGT 1233
||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||
Sbjct 664 GAGATCATTGTAAGAGATAACAAGAGGTTCCATCATTTTAGAGATGGTAACTGCTCTTGT 723
Query 1234 GGAGATTATTGGTAGACTTTTGTATGAAAATATGTGATTTT-TAACACA-TTGATACTTA 1291
||||||||||||||||||||||||| |||| |||||| || || || | || ||||| |
Sbjct 724 GGAGATTATTGGTAGACTTTTGTATTAAAAGATGTGAAATTCTA-CAAAGTT-ATACTAA 781
Query 1292 ACTA 1295
||||
Sbjct 782 ACTA 785
> AT1G47578.1 | Symbols: | Biotin/lipoate A/B protein ligase family
| chr1:17484365-17485470 FORWARD LENGTH=843
Length=843
Score = 518 bits (280), Expect = 7e-146
Identities = 334/361 (93%), Gaps = 0/361 (0%)
Strand=Plus/Plus
Query 110 AGCTTGAGCAGGTAGTCATTCGTGTTCTTTCTTCGGCTTTCTCCATCAACGCTACTCGTC 169
|||||||| | ||||| |||||||||||||||||||||||| ||||||| ||| ||||||
Sbjct 467 AGCTTGAGGAAGTAGTTATTCGTGTTCTTTCTTCGGCTTTCGCCATCAATGCTTCTCGTC 526
Query 170 TTGACGGTTTAACTGGAGTTTGGGTTGGTAACCAAAAAGTGGCGGCGTTAGGTATTCGTG 229
| |||||||| ||||||||||||||||| ||| ||||| |||||||| ||||||||||||
Sbjct 527 TCGACGGTTTTACTGGAGTTTGGGTTGGCAACAAAAAAATGGCGGCGATAGGTATTCGTG 586
Query 230 TGTCGAAATGGATGACATATCATGGTCTAGCTCTTAACGTTACAACAGATTTAACACCTT 289
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 587 TGTCGAAATGGATGACATATCATGGTCTAGCTCTTAATGTTACAACAGATTTAACACCCT 646
Query 290 TTAACTTGATAGTTCCATGTGGGATAAGAAACCGCGGGGTTGGAAGTGTAAAGGGTTTGA 349
|||||| |||||||||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 647 TTAACTCCATAGTTCCATGTGGGATAAGGAACCGTGGGGTTGGAAGCGTAAAGGGTTTGA 706
Query 350 TTGAGGATGGAGAACATTATGATAAGCTCGACGATTTGCAGTTGTTAGATATAGCTCATG 409
|||||||||||||||||||| ||||||| || ||||||||||||||||||||||||||||
Sbjct 707 TTGAGGATGGAGAACATTATAATAAGCTTGAAGATTTGCAGTTGTTAGATATAGCTCATG 766
Query 410 AGTCGTTATTAAAGGAATTCTCTGAAGTTTTCCAGCTTCAAATCGAAAAGCAAACAGGAT 469
|||||||| |||||||||||||||||||||| |||||||| || ||||||||||||| ||
Sbjct 767 AGTCGTTACTAAAGGAATTCTCTGAAGTTTTTCAGCTTCAGATGGAAAAGCAAACAGTAT 826
Query 470 T 470
|
Sbjct 827 T 827
Score = 182 bits (98), Expect = 1e-44
Identities = 109/114 (96%), Gaps = 2/114 (2%)
Strand=Plus/Plus
Query 1 ATGGGAACTGGAAG-TACAGAGGATTATCTCAATTTCGACATAAAGAATGCTCCTTTCGA 59
|||||||||||||| | ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 292 ATGGGAACTGGAAGCT-CAGAGAATTATCTCAATTTCGACATAAAGAATGCTCCTTTCGA 350
Query 60 TGTTTATAGAACTGAACGTGGTGGTGAAGTTACTTACCATGGTCCTGGTCAGCT 113
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 351 TGTTTATAGAACAGAACGTGGTGGTGAAGTTACTTATCATGGTCCTGGTCAGCT 404
> AT4G31050.1 | Symbols: | Biotin/lipoate A/B protein ligase family
| chr4:15114250-15115633 FORWARD LENGTH=1122
Length=1122
Score = 355 bits (192), Expect = 5e-97
Identities = 305/359 (85%), Gaps = 9/359 (3%)
Strand=Plus/Plus
Query 111 GCTTG-AGCAGGTAGTCATTCGTGTTCTTTCTTCGGCTTTCTCCATCAACGCTACTCGTC 169
||||| || || | ||||| ||||| ||||| || |||||||||| || ||| ||||||
Sbjct 557 GCTTGAAG-AGATTGTCATCCGTGTGCTTTCCTCAACTTTCTCCATTAAAGCTTCTCGTC 615
Query 170 TTGACGGTTTAACTGGAGTTTGGGTTGGTAACCAAAAAGTGGCGGCGTTAGGTATTCGTG 229
|||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||
Sbjct 616 TTGACGGTTTAACTGGAGTTTGGGTTGGCAACCAAAAAGTGGCGGCGATAGGTATTCGTG 675
Query 230 TGTCGAAATGGATGACATATCATGGTCTAGCTCTTAACGTTACAACAGATTTAACACCTT 289
||||||||||||| |||||||||||| |||||||||| || || |||||| ||||||| |
Sbjct 676 TGTCGAAATGGATAACATATCATGGTTTAGCTCTTAATGTCACTACAGATCTAACACCAT 735
Query 290 TTAACTTGATAGTTCCATGTGGGATAAGAAACCGCGGG-GTTGGAAGTGTAAAGGGTTTG 348
| |||| |||||||||||||||||| ||| |||| | ||||||| ||||||| |||
Sbjct 736 TCAACTGGATAGTTCCATGTGGGATTAGAGACCG-GAAAGTTGGAAACATAAAGGGCTTG 794
Query 349 ATTGAGGATGGAGAACATTATGATAAGCTCGACGATTTGCAG-TTGTTAGATATAGCTCA 407
|||| ||||||||||| || | | | || |||||| || ||| | ||||||| |||
Sbjct 795 CTTGAAGATGGAGAACACG--GA-ATGGTTGATGATTTG-AGGTTGATCGATATAGTTCA 850
Query 408 TGAGTCGTTATTAAAGGAATTCTCTGAAGTTTTCCAGCTTCAAATCGAAAAGCAAACAG 466
||||| ||| |||||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 851 CGAGTCTTTACTAAAGGAATTCTCTGAAGCTTTCCAGCTTCAGATCGAAAAGCAAACAG 909
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63704491605
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5