BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473904
Length=1170
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47603.1 | Symbols: ATPUP19, PUP19 | purine permease 19 | ch... 1568 0.0
AT1G47590.1 | Symbols: ATPUP20 | Member of a family of proteins... 1238 0.0
> AT1G47603.1 | Symbols: ATPUP19, PUP19 | purine permease 19 |
chr1:17496839-17498110 REVERSE LENGTH=1182
Length=1182
Score = 1568 bits (849), Expect = 0.0
Identities = 1082/1191 (91%), Gaps = 30/1191 (3%)
Strand=Plus/Plus
Query 1 ATGGGTTTCCATACCAAATCTCCGGACCGAATAA--CA-CAAGAAGAAGAAGCAAATATT 57
||||||||||| || ||||| ||||||||| ||| || |||||||||||||||||||
Sbjct 1 ATGGGTTTCCACACAAAATCGCCGGACCGAGTAACTCATGAAGAAGAAGAAGCAAATATA 60
Query 58 GGAGTTGAGAATCAACCAAGAGCAACGACATCAACAGCTCTTGATAGGTCACAAATTCTT 117
|||||||| ||||||||||||| ||||||||||||| ||||| |||||||||||||| ||
Sbjct 61 GGAGTTGATAATCAACCAAGAGAAACGACATCAACATCTCTTAATAGGTCACAAATTATT 120
Query 118 AAGACACGAAACTGGTGGATTTGTATATTTGTCTGCTCAG-GTTTGGTCGCAGCAGGACG 176
|||||| ||||||||||||||||||| ||||||||||| | ||||||||| |||||||||
Sbjct 121 AAGACAAGAAACTGGTGGATTTGTATCTTTGTCTGCTC-GTGTTTGGTCGTAGCAGGACG 179
Query 177 TGTTCTT-TCCACACTTCTTCTAAACTTCTACTTCATCCAAATAAGAAGAAATGTTTGTG 235
|||| || ||||| |||||| ||||||||||||||||||||| | || || |||||||||
Sbjct 180 TGTT-TTATCCACCCTTCTTTTAAACTTCTACTTCATCCAAACAGGACGAGATGTTTGTG 238
Query 236 ATGACCCAAAACGATTTAGAGGAACATGGCTCCAGTCTTTAGTCCAAAACGCTGCGTTTC 295
|||||||||| | ||||| ||| ||||||||||||||| | |||||||||||||||||||
Sbjct 239 ATGACCCAAAGCAATTTAAAGGCACATGGCTCCAGTCTATGGTCCAAAACGCTGCGTTTC 298
Query 296 CTTCTACGGCCTTCCTTCTTCTCTTATGGCGTTCTTCATTCTCCACCCAGAGAGAAACTT 355
||| ||| ||||| |||||||||||||||||||||||||| |||||||| || |||||||
Sbjct 299 CTTTTACAGCCTTTCTTCTTCTCTTATGGCGTTCTTCATTTTCCACCCATAGTGAAACTT 358
Query 356 CTACTCCTTGTTATTCGTCTTTTGGCAAACTCTTTCTTCTTTACATCTCTCTCGGCGTCC 415
| || ||| || ||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 C--CT-CTTCTTCTTCTTCTTTTGGCAAACTCTTTCTTCTTTACATCTCTCTCGGCGTCC 415
Query 416 TCTTTGTGGCTTATAGCCAACTCTATGCTATTGGGAGAACTCATTCTCTGTTTTTCTTTT 475
| |||| ||||||||||||||||||||| |||||| |||| |||| | |||| ||||| |
Sbjct 416 TATTTGCGGCTTATAGCCAACTCTATGCAATTGGGCGAACGCATTGTGTGTTCTTCTTGT 475
Query 476 GGATCTTTACTTCCCAATTGATTTTCACATCCATATTTACAACAATCATCAACAAACAAA 535
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 476 GGATCTTTACTTCCCAATTGATTTTCACTTCCATATTTACAACAATTATCAACAAACAAA 535
Query 536 AATTCAACCGTTGGATCATATTATCCA----------T---G-TG-CACAGGCTTAGGCA 580
||||||||||||||||||||||||||| | | || ||||||||||||||
Sbjct 536 AATTCAACCGTTGGATCATATTATCCATGGTCCTTTCTGGAGCTGCCACAGGCTTAGGCA 595
Query 581 TTACATCTTCAGGTGACGCCTATATTCCCTGCGAAAATAATGAAGGCTCAAGAATGAGTA 640
||||||||||||||| ||||||||||||||||| || ||||||||||||| ||||||||
Sbjct 596 TTACATCTTCAGGTGGCGCCTATATTCCCTGCG--AA-AATGAAGGCTCAAAAATGAGTA 652
Query 641 ACGGCGCTTGGTGTTCCTTCTTCGGCACGGTAGCATTCTCTCTATCTTTATGTATCATGC 700
|||||||||||||| ||||||| |||||||||||||||||| ||||||||||||||||||
Sbjct 653 ACGGCGCTTGGTGTGCCTTCTTTGGCACGGTAGCATTCTCTTTATCTTTATGTATCATGC 712
Query 701 AATTAGGATTCCAAAAGGTCATACCAACTACAGAGAGTAGAGTTTCCGCGGTGATGCTGA 760
||||||| ||||||||||||||||| |||||| |||||||||||||||||||||| || |
Sbjct 713 AATTAGGGTTCCAAAAGGTCATACCGACTACACAGAGTAGAGTTTCCGCGGTGATTCTAA 772
Query 761 TGCAAACCAATGCTTCAATGATTGCAACATTGATATGTTTGGTAGGGTTATTCGTAAGCG 820
|||||||||||||||| ||||||||||| |||||||||||||| || |||||||| || |
Sbjct 773 TGCAAACCAATGCTTCTATGATTGCAACGTTGATATGTTTGGTTGGATTATTCGTTAGTG 832
Query 821 GTGAATTCAAAGATATCAAGGAAGATTTGGAAACGTTTAAGAAGGGGAAGCAACTTTATG 880
|||||||||||||||| || |||||||| || ||||||||||||||||||| ||||||||
Sbjct 833 GTGAATTCAAAGATATAAAAGAAGATTTTGAGACGTTTAAGAAGGGGAAGCCACTTTATG 892
Query 881 T-TTGGAGTCTAATTGGATTATCACTTGCGTGGCAAGTAATGTCTTTAGGGCTTGTGGGG 939
| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 893 TCTT-GAGTCTAATTGGATTATCGCTTGCGTGGCAAGTAATGTCTTTAGGGCTTGTGGGG 951
Query 940 CTTGTGTGTTTGGCTTCTTCTCTTTTCTCTAATGTTGTCAGCTTCTGCGCAATACCTTTA 999
|| ||||||||||||||||||||||||||||||||||||||||||||| ||| || |||
Sbjct 952 CTAGTGTGTTTGGCTTCTTCTCTTTTCTCTAATGTTGTCAGCTTCTGCTCAACGCCATTA 1011
Query 1000 GCGAACATTCTCCTTGTGTTGGCGTTTCGGTTTATGGATGCCGACGTTAAATATTTTAAG 1059
| ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1012 GTAAACATTCTCCTTGTGTTGGCGTTTCGGTTTACGGATGCCGACGTTAAATTTTTTAAG 1071
Query 1060 GAAGGAGCTCTGGTAGCTGGGATTCTTGGTTTTGCATCTTATGTATATTCCTTGTATAAG 1119
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1072 GAAGGAGCTCTGGTAGCTGGGATTCTTGGTTTTGCATCTTATGTGTATTCCTTGTATAAG 1131
Query 1120 TCTACCAAGAAAAAGGAAATAGCAAGCCAAAGCGAAACAACTAGAGTATGA 1170
||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1132 TCTACCAAGAAAAAGGAAATAGCAAGCCAAAGCCAAACAACTAGAGTATGA 1182
> AT1G47590.1 | Symbols: ATPUP20 | Member of a family of proteins
related to PUP1, a purine transporter. May be involved in
the transport of purine and purine derivatives such as cytokinins,
across the plasma membrane. | chr1:17486691-17487863
REVERSE LENGTH=1173
Length=1173
Score = 1238 bits (670), Expect = 0.0
Identities = 986/1134 (87%), Gaps = 40/1134 (4%)
Strand=Plus/Plus
Query 37 CAAGAAGAAGAAGCAAATATTGGAGTTGAGAATCAACCAAGAGCAACGACATCAACAGC- 95
|||||||||||||| |||||||||||| ||||||||||||||||||||||||||| |||
Sbjct 40 CAAGAAGAAGAAGCTAATATTGGAGTTAAGAATCAACCAAGAGCAACGACATCAATAGCT 99
Query 96 TCTTGATAGGTCACAAATTCTTAAGACACGAAACTGGTGGATTTGTATATTTGTCTGCTC 155
|| |||| ||||||||||||| |||||||||||||||||||||||||| |||||||||||
Sbjct 100 TC-TGATCGGTCACAAATTCTCAAGACACGAAACTGGTGGATTTGTATCTTTGTCTGCTC 158
Query 156 AGGTTTGGTCGCAGCAGGACGTGTTCTT-TCCACACTTCTTCTAAACTTCTACTTCATCC 214
||||| |||| | ||||||||||| || || ||||||||| |||||| |||||||||||
Sbjct 159 TGGTTTTGTCGTAACAGGACGTGTT-TTATCAACACTTCTTTTAAACTACTACTTCATCC 217
Query 215 AAATAAGAAGAAATGTTTGTGATGACCCAAAACGATTTAGAGGAACATGGCTCCAGTCTT 274
||| | || | ||| |||||| || ||||||| ||||| |||||| ||||| || ||||
Sbjct 218 AAACAGGACGTGATGCTTGTGACGATCCAAAACAATTTAAAGGAACCTGGCTTCAATCTT 277
Query 275 TAGTCCAAAACGCTGCGTTTCCTTCTACGGCCTTCCTTCTTCTCTTATGGCGTTCTTCAT 334
| ||||||||||||||||||| |||| ||||||||||||||||| |||||||||| ||
Sbjct 278 TTCTCCAAAACGCTGCGTTTCCATCTATAGCCTTCCTTCTTCTCTTGTGGCGTTCTTTAT 337
Query 335 TCTCCACCCA-GAGAGAAACTTCTACTCCTTGTTATTCGTCTTTTGGCAAACTCTTTCTT 393
||||||| || | ||||||| || | | | || ||| |||||||| ||||||||||||
Sbjct 338 TCTCCACTCATG-GAGAAAC-TC-AAT-C---TTCTTCTTCTTTTGGAAAACTCTTTCTT 390
Query 394 CTTTACATCTCTCTCGGCGTCCTCTTTGT-GGCTTATAGCCAACTCTATGCTATTGGGAG 452
||||||||||||||||| ||||||||| | |||||||||||||||||| || ||||||||
Sbjct 391 CTTTACATCTCTCTCGGTGTCCTCTTT-TCGGCTTATAGCCAACTCTACGCAATTGGGAG 449
Query 453 AACTCATTCTCTGTTTTTCTTTTGGATCTTTACTTCCCAATTGATTTTCACATCCATATT 512
|||||||| | |||| |||||||||||||||||| | |||||||| ||||| ||||||||
Sbjct 450 AACTCATTGTGTGTTCTTCTTTTGGATCTTTACTACACAATTGATCTTCACTTCCATATT 509
Query 513 TACAACAATCATCAACAAACAAAAATTCAACCGTTGGATCATATTATCCAT-GTGC--AC 569
|||| | || || |||||||| ||||||||||||||||||||||||||||| || | |
Sbjct 510 TACAGCGATTATTAACAAACACAAATTCAACCGTTGGATCATATTATCCATCGTCCTTTC 569
Query 570 ---AG--GCTTA--GGCATTACATCTTCAGG-TGACGCCTA-TATTCCCTGCGAAAATAA 620
|| || || |||||||||||||| || ||| ||||| || |||||||| || |
Sbjct 570 TGGAGTTGC-TACGGGCATTACATCTTC-GGATGATGCCTATTA-TCCCTGCG--AA-AG 623
Query 621 TGAAGGCT-CAAGAATGAG-TAACGGCGCTTGGTGTTCCTTCTTCGGCACGGTAGCATTC 678
|||||| | || |||||| | |||| ||||||||| |||||| ||||||||||| |||
Sbjct 624 TGAAGGATGGAA-AATGAGCT-ACGGTGCTTGGTGTAGCTTCTTTGGCACGGTAGCCTTC 681
Query 679 TCTCTATCTTTATGTATCATGCAATTAGGATTCCAAAAGGTCATACC-AACTACAGAGAG 737
||| ||||| ||||||||||||||||||| ||||||||||| ||||| || ||||||||
Sbjct 682 TCTTTATCTCTATGTATCATGCAATTAGGGTTCCAAAAGGTTATACCTAA-GACAGAGAG 740
Query 738 TAGAGTTTCCGCGGTGATGCTGATGCAAACCAATGCTTCAATGATTGCAACATTGATATG 797
||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||
Sbjct 741 TAGAGTTTCCGCGGTGATGTTGATGCAAACCAATGCTTCTATGATTGCAACGTTGATATG 800
Query 798 TTTGGTAGGGTTATTCGTAAGCGGTGAATTCAAAGATATCAAGGAAGATTTGGAAACGTT 857
|||||| || || || ||||||||||| ||||||||||||||||||||||| || |||||
Sbjct 801 TTTGGTTGGATTGTTTGTAAGCGGTGAGTTCAAAGATATCAAGGAAGATTTCGAGACGTT 860
Query 858 TAAGAA-GGGGAAGCAACTTTATGTTTGGAGTCTAATTGGATTATCACTTGCGTGGCAAG 916
||| || |||||||| |||||| |||| |||||| || |||||||||||||| |||||||
Sbjct 861 TAA-AACGGGGAAGCCACTTTACGTTTTGAGTCTTATCGGATTATCACTTGCATGGCAAG 919
Query 917 TAATGTCTTTAGGGCTTGTGGGGCTTGTGTGTTTGGCTTCTTCTCTTTTCTCTAATGTTG 976
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 920 TAATGTCTTTAGGGCTTGTGGGTCTTGTGTGTTTGGCTTCTTCCCTTTTCTCTAATGTTG 979
Query 977 TCAGCTTCTGCGCAATACCTTTAGCGAACATTCTCCTTGTGTTGGCGTTTCGGTTTATGG 1036
||||||||| ||| | |||| ||||||||||| || ||||||||||||||||||||||||
Sbjct 980 TCAGCTTCTCCGCGACACCTGTAGCGAACATTTTCGTTGTGTTGGCGTTTCGGTTTATGG 1039
Query 1037 ATGCCGACGTTAAATATTTTAAGGAAGGAGCTCTGGTAGCTGGGATTCTTGGTTTTGCAT 1096
||| |||| || || ||||||| |||||||||| |||||||||| ||||| |||||||
Sbjct 1040 ATGACGACATTGGATGGTTTAAGGGAGGAGCTCTGTTAGCTGGGATCCTTGGGTTTGCAT 1099
Query 1097 CTTATGTATATTCCTTGTATAAGTCTACCAAGAAAAAGGAAATAGCAAGCCAAA 1150
||||||||||||||||||| ||| ||| |||||| ||||||||||||||||||
Sbjct 1100 CTTATGTATATTCCTTGTACAAGGCTATTAAGAAACAGGAAATAGCAAGCCAAA 1153
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57429423480
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5