BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473910
Length=700
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47655.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 896 0.0
AT5G66940.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 152 4e-36
AT1G64620.1 | Symbols: | Dof-type zinc finger DNA-binding fami... 65.8 5e-10
> AT1G47655.1 | Symbols: | Dof-type zinc finger DNA-binding family
protein | chr1:17525365-17526306 FORWARD LENGTH=942
Length=942
Score = 896 bits (485), Expect = 0.0
Identities = 642/712 (90%), Gaps = 34/712 (5%)
Strand=Plus/Plus
Query 4 ctttcgct-ttctctcttctctcccattaacttctctctcgttttctcatagtctcAACT 62
||||| || ||||||||||||| |||||||||||||||||||||||||||| ||||||||
Sbjct 10 CTTTCTCTCTTCTCTCTTCTCT-CCATTAACTTCTCTCTCGTTTTCTCATACTCTCAACT 68
Query 63 T-A-ATGCCGTCGGAACCAAACCAAACCCGACCCACCAGAATTCAGCCCTCTACGGCGGC 120
| | |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 69 TAATATGCCGTCGGAACCAAACCAAACCCGACCCACCAGAGTTCAGCCCTCAACGGCGGC 128
Query 121 TTACCCACCTCCAAATCTGGCTGAGCCTCTCCCATGTCCTCGCTGCAACTCCACCACCAC 180
||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 129 TTACCCACCGCCAAATCTGGCTGAGCCTCTTCCTTGTCCTCGCTGCAACTCCACCACCAC 188
Query 181 CAAGTTCTGTTACTACAACAACTACAATCTTGCTCAGCCTCGTTACTTCTGCAAATCTTG 240
|||||||||||||||||||||||| || || ||||||||||| |||| ||||||||||||
Sbjct 189 CAAGTTCTGTTACTACAACAACTATAACCTCGCTCAGCCTCGCTACTACTGCAAATCTTG 248
Query 241 CCGCCGTTACTGGACTCAAGGTGGTACACTCCGTGACGTCCCCGTCGGTGGTGGAACTCG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 249 CCGCCGTTACTGGACTCAAGGTGGTACACTCCGTGACGTCCCCGTCGGTGGTGGAACTCG 308
Query 301 TCGGAGCTCTTCAAAACGTCACCGCTCTTTCTCCACTACCGCAACCTCCTCTTCCTCCTC 360
||| ||||| |||||||||||||| ||||||||||| || || |||||||||||||||||
Sbjct 309 TCGAAGCTCCTCAAAACGTCACCGTTCTTTCTCCACCACTGCCACCTCCTCTTCCTCCTC 368
Query 361 TTCTTCCGTCATCACCACGAC--CA-AAGAAGCAGCCAC-A---AAT-GAG--A--CGAA 408
|||||||||||||||||| || || ||||| ||||||| | || ||| | | ||
Sbjct 369 TTCTTCCGTCATCACCACCACGACACAAGAACCAGCCACGACTGAAGCGAGTCAAACTAA 428
Query 409 GGGTAGTAATGTAATTTCAGGTCATGGAAGCTTTGCTTCTCTGTTGGGTTTAGGAAGTGG 468
|| || |||| |||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 429 GGTTACTAATTTAATTTCAGGTCATGGAAGCTTTGCTTCTCTGTTAGGTTTAGGAAGTGG 488
Query 469 AAATGGTGGGTTGGATTTCGGGTTTGGGTATGGGTACGGGTACGGGCACGGGCACGGGCT 528
||||||||||||||||| |||||||||||| ||||||||||| |
Sbjct 489 AAATGGTGGGTTGGATTACGGGTTTGGGTA------CGGGTACGGGC------------T 530
Query 529 TGAGGATATGAGTGTTGGGTATCTTGGAGACTCCTCCGGAGTAGAGATTCCGGTGGTTGA 588
|||||| |||||| |||||||||||||||| || |||| || ||||||||||||||||||
Sbjct 531 TGAGGAGATGAGTATTGGGTATCTTGGAGATTCTTCCGTAGGAGAGATTCCGGTGGTTGA 590
Query 589 TGGTGGTGGTGGTGACACGTGGCAGATTGGGGAGATTGAAGGTAAAAGTGGAGGAGACAG 648
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 TGGTTGTGGTGGTGACACGTGGCAGATTGGGGAGATTGAAGGTAAAAGTGGAGGAGACAG 650
Query 649 TTTAATATGGCCTGGTCTTGAGATATCAATGCAAACCAACGATGTTAAGTGA 700
||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 651 TTTGATATGGCCTGGTCTTGAGATCTCAATGCAAACCAACGATGTTAAGTGA 702
> AT5G66940.1 | Symbols: | Dof-type zinc finger DNA-binding family
protein | chr5:26727989-26728666 REVERSE LENGTH=678
Length=678
Score = 152 bits (82), Expect = 4e-36
Identities = 123/142 (87%), Gaps = 6/142 (4%)
Strand=Plus/Plus
Query 155 TGTCCTCGCTG-CAACTCCACCACCACCAAGTTCTGTTACTACAACAACTACAATCTTGC 213
||||||||||| || || |||| |||||||||||||||||||||||||||||| ||| |
Sbjct 100 TGTCCTCGCTGTGAA-TCAACCAACACCAAGTTCTGTTACTACAACAACTACAA-CTT-C 156
Query 214 TCAG--CCTCGTTACTTCTGCAAATCTTGCCGCCGTTACTGGACTCAAGGTGGTACACTC 271
||| |||||| | |||||||| ||||| ||||||||||||||||| || ||||| |||
Sbjct 157 TCACAACCTCGTCATTTCTGCAAGTCTTGTCGCCGTTACTGGACTCATGGAGGTACTCTC 216
Query 272 CGTGACGTCCCCGTCGGTGGTG 293
|||||| | |||||||||||||
Sbjct 217 CGTGACATTCCCGTCGGTGGTG 238
> AT1G64620.1 | Symbols: | Dof-type zinc finger DNA-binding family
protein | chr1:24006992-24008694 FORWARD LENGTH=1589
Length=1589
Score = 65.8 bits (35), Expect = 5e-10
Identities = 102/133 (77%), Gaps = 10/133 (8%)
Strand=Plus/Plus
Query 164 TGCAACTCCACCACCACCAAGTTCTGTTACTACAACAACTACAATCTTG-CTCAGCCTC- 221
||||||||| | ||||||||||||||||||||||||||||| || | | ||||| |
Sbjct 456 TGCAACTCCTTAAACACCAAGTTCTGTTACTACAACAACTACAGCCT-GACGCAGCC-CA 513
Query 222 GTTACTTCTGCAAAT-CTTGCCGCCGTTACTGGACT-CAAGGTGGTACACTCCGTGA-CG 278
| ||||| || ||| || || | | || ||||| || |||||| | ||| | || |
Sbjct 514 GGTACTTTTGTAAAGACT-GCAGGAGGTATTGGACCGCA-GGTGGTTCCCTCAG-GAACA 570
Query 279 TCCCCGTCGGTGG 291
|||||||||||||
Sbjct 571 TCCCCGTCGGTGG 583
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33908049225
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5