BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473911
Length=1727
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47670.1 | Symbols: | Transmembrane amino acid transporter ... 2837 0.0
> AT1G47670.1 | Symbols: | Transmembrane amino acid transporter
family protein | chr1:17536667-17539538 REVERSE LENGTH=1779
Length=1779
Score = 2837 bits (1536), Expect = 0.0
Identities = 1665/1728 (96%), Gaps = 6/1728 (0%)
Strand=Plus/Plus
Query 1 aaaaaaaaaaCATCATTTCTTCTCGCACTCTTCACCTGCTCCAATGGACGAAAGACCCGA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10 AAAAAAAAAACATCATTTCTTCTCGCACTCTTCACCTGCTCCAATGGACGAAAGACCCGA 69
Query 61 GACAGAGCTAATATCAATACCAGCCACACCACGAGTTTCAACACCGGAGATTCTAACTCC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 70 GACAGAGCTAATATCAATACCAGCCACACCACGAGTTTCAACACCGGAGATTCTAACTCC 129
Query 121 CTCCGGTCAAAGATCACCTCGTCCGGCCACCAAACCGTCGTCGGCGACATGGACTCCGAC 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 130 CTCCGGTCAAAGATCACCTCGTCCGGCCACCAAACCATCGTCGGCGACATGGACTCCGAC 189
Query 181 TTCTTTCATATCTCCGAGGTTCTTGAGTCCGATTGGTACACCAATGAAACGAGTTCTTGT 240
||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 190 TTCGTTCATATCACCGAGGTTCTTGAGTCCGATTGGTACACCAATGAAACGAGTTCTTGT 249
Query 241 CAACATGAAAGGGTATCTTGAAGAAGTTGGTCATCTTACTAAGCTAAACCCACAAGATGC 300
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 250 GAACATGAAAGGGTATCTTGAAGAAGTTGGTCATCTCACTAAGCTAAACCCACAAGATGC 309
Query 301 TTGGCTTCCAATCACTGAGTCTCGTAATGGAAACGCTCATTACGCTGCGTTTCACAATCT 360
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 310 TTGGCTTCCAATCACTGAATCTCGTAATGGAAACGCTCATTACGCTGCTTTTCACAATCT 369
Query 361 AAACGCTGGTGTTGGTTTCCAAGCCCTTGTTCTTCCCGTCGCGTTTGCGTTTCTTGGCTG 420
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 370 CAACGCTGGTGTTGGTTTTCAAGCCCTTGTTCTTCCCGTCGCGTTTGCGTTTCTTGGCTG 429
Query 421 GAGTTGGGGAATACTATCCTTGACAATAGCATATTGCTGGCAACTCTACACACTGTGGAT 480
||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||
Sbjct 430 GAGTTGGGGAATACTGTCTTTAACAATAGCATATTGCTGGCAACTCTACACACTGTGGAT 489
Query 481 TCTAGTTCAGTTGCACGAAGCTGTCCCCGGGAAGCGATACAATCGATATGTCGAGCTTGC 540
||| ||||||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 490 TCTGGTTCAGTTGCACGAAGCTGTCCCCGGGAAACGCTACAATCGATATGTCGAGCTTGC 549
Query 541 ACAAGCTGCATTTGGAGAAAGGTTGGGAGTTTGGCTTGCACTGTTTCCTACGGTTTACTT 600
||||||||| |||||||||||||| ||||| ||||||||| |||||||||||||||||||
Sbjct 550 ACAAGCTGCTTTTGGAGAAAGGTTAGGAGTATGGCTTGCATTGTTTCCTACGGTTTACTT 609
Query 601 ATCAGCAGGAACCGCGACAGCGCTGATTCTGATCGGTGGAGAGACAATGAAACTCTTCTT 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 610 ATCAGCAGGAACCGCGACAGCGCTGATTCTGATCGGTGGAGAGACAATGAAACTCTTCTT 669
Query 661 CCAAATAGTTTGCGGTCCATTATGCACCTCGAACCCGTTAACAACAGTGGAATGGTATTT 720
||| ||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 670 CCAGATAGTTTGCGGTCCATTATGCACCTCGAATCCGTTAACAACAGTTGAATGGTATTT 729
Query 721 GGTGTTTACATCTCTATGCATCGTTCTGTCTCAGCTTCCAAACCTCAATTCGATTGCGGG 780
||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 730 GGTGTTTACATCTCTCTGCATCGTTCTGTCTCAGCTACCAAACCTCAATTCTATTGCGGG 789
Query 781 ACTGTCCTTAATAGGAGCAGTGACTGCAATAACTTACTCCACAATGGTTTGGGTTCTCTC 840
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 ACTCTCCTTAATAGGAGCAGTGACTGCAATAACTTACTCCACAATGGTTTGGGTTCTCTC 849
Query 841 TGTGAGCCAACCAAGACCAGCCACTATCTCATACGAGCCTCTTTCTATGCCTTCGACTTC 900
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 850 TGTGAGCCAACCAAGACCAGCCACTATCTCATACGAGCCTCTTTCTATGCCTTCGACTTC 909
Query 901 TGGTTCACTCTTCGCTGTTTTGAATGCTCTTGGCATTATAGCTTTTGCCTTCAGAGGTCA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 910 TGGTTCACTCTTCGCTGTTTTGAATGCTCTTGGCATTATAGCTTTTGCCTTCAGAGGTCA 969
Query 961 CAACTTGGTTCTGGAAATTCAGTCGACGATGCCATCAACGTTTAAGCATCCAGCTCATGT 1020
|||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 970 CAACTTGGTTTTGGAAATTCAGTCGACGATGCCATCAACGTTTAAGCATCCTGCTCACGT 1029
Query 1021 ACCAATGTGGAGAGGAGCGAAAATTTCTTACTTCTTCATTGCTCTGTGTATCTTTCCAAT 1080
|||||||||||||||||| ||||| ||||||||| |||||||||||||||||||||||||
Sbjct 1030 ACCAATGTGGAGAGGAGCCAAAATCTCTTACTTCCTCATTGCTCTGTGTATCTTTCCAAT 1089
Query 1081 CTCCATTGGAGGCTTTTGGGCTTATGGGAACCTTATGCCTTCAGGGGGTATGCTTGCTGC 1140
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1090 CTCCATCGGAGGCTTTTGGGCTTATGGGAACCTTATGCCTTCAGGAGGTATGCTTGCTGC 1149
Query 1141 TTTATATGCATTCCACATTCATGACATTCCGAGAGGCTTATTAGCGACGGCATTTCTCCT 1200
||| ||||||||||||||||| || || ||||||||||||||||||||||||||||||||
Sbjct 1150 TTTGTATGCATTCCACATTCACGATATCCCGAGAGGCTTATTAGCGACGGCATTTCTCCT 1209
Query 1201 AGTAGTCTTCAGCTGTCT-GAGCAGTTTTCAGATATACTCGATGCCGGCCTTTGACAGCT 1259
||||||||||||||| || ||||||||||||||||||||| ||||| |||||||||||||
Sbjct 1210 AGTAGTCTTCAGCTG-CTTGAGCAGTTTTCAGATATACTCCATGCCTGCCTTTGACAGCT 1268
Query 1260 TTGAGGCTGGCTACACAAGCAGAACCAACAAGCCGTGTTCGATCTGGGTCAGATCAGGTT 1319
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1269 TTGAAGCTGGCTACACAAGCAGAACCAACAAGCCGTGTTCGATTTGGGTCAGATCAGGTT 1328
Query 1320 TCCGAGTCTTTTTCGGTTTTGTCTCGTTTTTCATCGGTGTTGCTCTCCCTTTCCTATCTA 1379
||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1329 TCCGAGTCTTTTTTGGTTTTGTCTCGTTTTTCATCGGTGTTGCTCTCCCTTTTCTGTCTA 1388
Query 1380 GTCTCGCGGGTTTGCTTGGTGGACTCACGCTCCCGGTCACATTTGCTTATCCTTGCTTCA 1439
|||| ||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1389 GTCTTGCGGGGTTGCTCGGTGGACTCACTCTCCCGGTCACATTTGCTTATCCTTGCTTCA 1448
Query 1440 TGTGGGTCTTGATTAAGAAACCGGCGAAATACAGTTTCAATTGGTATTTCCACTGGGGAT 1499
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1449 TGTGGGTCTTGATTAAGAAACCGGCGAAATACAGTTTCAATTGGTATTTCCATTGGGGAT 1508
Query 1500 TAGGTTGGTTGGGAGTTGCTTTCAGCTTGGCATTCTCCATAGGTGGGATTTGGAGTATGG 1559
||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct 1509 TAGGTTGGTTGGGAGTTGCATTCAGCTTGGCATTCTCCATAGGTGGGATCTGGAGTATGG 1568
Query 1560 TTACCAATGGACTTAAGCTCAAGTTCTTCAAGCCGCCTAACTAAGTAGTAATATCCTATA 1619
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1569 TTACCAATGGACTTAAGCTCAAGTTCTTCAAGCCGCCTAACTAAGTAGTAATAGCCTAT- 1627
Query 1620 TGGTGgttttgtttggttggcaagtttgatgttttaagagattttgtattatatgtgttt 1679
| ||||||||||||||||| |||||||| |||||||||||||||||||| | |||||||
Sbjct 1628 -G-TGGTTTTGTTTGGTTGGGAAGTTTGAAGTTTTAAGAGATTTTGTATT-TCTGTGTTT 1684
Query 1680 tgtttAAGAGTGCCTTTGTTTTGAAGTTGGAACAATGTAATGTGTATT 1727
||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1685 TGTTTAAGAGTGCCTATGTTTTGAAGTTGGAACAATGTAATGTGTATT 1732
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 85391127045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5