BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473912
Length=1484
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47310.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1967 0.0
> AT1G47310.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant
structures; EXPRESSED DURING: 13 growth stages; Has 45 Blast
hits to 45 proteins in 11 species: Archae - 0; Bacteria -
0; Metazoa - 0; Fungi - 0; Plants - 45; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr1:17342914-17344802
FORWARD LENGTH=1540
Length=1540
Score = 1967 bits (1065), Expect = 0.0
Identities = 1359/1500 (91%), Gaps = 24/1500 (2%)
Strand=Plus/Plus
Query 1 CCAGGCATGCTCATGTCATGTGAAACTTGCCACATCACTAAAATAATCGATATCGGAAAA 60
||||||| |||||||||||||||| |||||||||||||||| ||||| |||||||||||
Sbjct 27 CCAGGCAGGCTCATGTCATGTGAATCTTGCCACATCACTAACATAATTAATATCGGAAAA 86
Query 61 CTTCAATGGGCGTTATCGTCATTTCCTTAAAAAGAGCCGCGAGACAGTCGACGGTTACGG 120
|||||||||| ||||||||||||||| |||||||| | ||||||| |||||||||||||
Sbjct 87 CTTCAATGGGTGTTATCGTCATTTCCCTAAAAAGAACAACGAGACAATCGACGGTTACGG 146
Query 121 CGGCGTAAACCTTATCGGACGAATGAAGATCTGCCGTTCTCCTTTCTCCATCGTACTCTC 180
||||||||||||||||||||||||||||||||| || ||||||| |||| ||||||||||
Sbjct 147 CGGCGTAAACCTTATCGGACGAATGAAGATCTGTCGCTCTCCTTCCTCCGTCGTACTCTC 206
Query 181 TCTATTCATCCAAGTCCTTACTCTAGCCATAGCTCTCGATCCTTCGCAGCCAGACGAATC 240
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 207 TCTATTCATCCAAGTCCTTACTCTAGCCGTCGCTCTCGATCCTTCGCAGCCAGACGAATC 266
Query 241 CAACATCACCACAACACCGATTCTACAGGATGTGTTAAAGGAGATATCGGTGAAGCAGAA 300
|||||||||| ||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 267 CAACATCACCGCAACACCGATTCTACAGGATGTGCTGAAGGAGATATCGGTGAAGCAGAA 326
Query 301 GTGGAATCTGGAGGAAGTTAGATTTTCGAAATTGGAAGTTAAGAAGATTCGTATTGGTAC 360
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 327 GTGGAATCTAGAGGAAGTTAGATTTTCGAAATTGGAAGTTAAGAAGATTCGTATTGGTAC 386
Query 361 GGGTCGGAGATTTGAGATCCGGATCCGATTAGGGAAGAGCAGATTTGTATTTATCTTCCC 420
| ||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 387 GAGTCGGAGATTTGAGATCCGGATCCGATTAGGGAAGAGCAGATTCGTATTCATCTTCCC 446
Query 421 TGATGAAGTAACTGATTGGAGAAGAAGCGGCGGAGGAAGAGATGTGGAGTTGCAGGAAGT 480
|||||| |||| |||||||||||||||||||| || || ||||| |||||||||||| |
Sbjct 447 GGATGAAATAACAGATTGGAGAAGAAGCGGCGGGGGTAGTGATGTTGAGTTGCAGGAACT 506
Query 481 AGTTAGGGAAGTTAATTCGAGTAAGGTTCTTGATCCGC---TTGTATTGAAAGGTCCATT 537
|||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 507 AGTTCGGGAAGTTAATTCGAGTAAGGTTCTTGATCCGCCGCTTGTATTGAAAGGTCCATT 566
Query 538 TGAGCTACGAGTCGATGGCGATGATCATCTCTCGCTTTCGTTGCCGATGAACATTTCGCA 597
|||||||| ||||||||| |||||| ||||||||||||||| |||||||||||||| ||
Sbjct 567 TGAGCTACTTGTCGATGGCAATGATCGTCTCTCGCTTTCGTTACCGATGAACATTTCACA 626
Query 598 CAACGGCTTAAAACGAGTGCTTGTGAGTGAAGGCATTTCAGTAGAAATAAGGGAAGCTCA 657
| ||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||||||
Sbjct 627 TAGCGGTTTAAAACGAGTTCTTGTGAGTGAGGGCATCTCAGTAGAAATAAGGGAAGCTCA 686
Query 658 AGCAGTCTCTCTTTTCCACTCATCCCATCGAAGATACGCTGCTACTGTAGATA-TG-AAA 715
|||||||||||| ||||||||||||||||||||||||||||||||||| ||| || |||
Sbjct 687 AGCAGTCTCTCTATTCCACTCATCCCATCGAAGATACGCTGCTACTGTCGATCCTGTAAA 746
Query 716 -A--ACGGAA--A--TTGTTTATTGTCGTTTTTAGGCTCTGTGTGTGTGCCACTACCACC 768
| | ||| | || ||||| |||||||| || ||||||||||||||| | || ||
Sbjct 747 TATTAAAGAAGGAAGTTCTTTATGGTCGTTTTGGGGTTCTGTGTGTGTGCCATTGCCTCC 806
Query 769 CATACAAATCTTAGGATCAGCTTCATTGGTGGCATTTAGGACATCAAACACGGATTCC-C 827
|||||||||| |||| |||||||||||||| || |||||||| ||||| | | | | |
Sbjct 807 CATACAAATCATAGGGTCAGCTTCATTGGTTGCGTTTAGGACTTCAAATGCA-ACTACGC 865
Query 828 AAATCAAGACTTCATACTTATCCGATGAGGCAATCCAGTTACT-TCCAGATAAATGTTAT 886
||||||||||||| |||||||| |||||||||||||| ||| | | |||| |||||||||
Sbjct 866 AAATCAAGACTTCGTACTTATCAGATGAGGCAATCCATTTA-TATGCAGAAAAATGTTAT 924
Query 887 GACAAAGCTAACACGTACAAGCAGCATCGTTTCCCAACTGATCTTCTTGGCTTGAAGATT 946
| |||||| ||||||||| ||||||||| ||||||| ||||||||||||||| |||||
Sbjct 925 TATAAAGCTCACACGTACAGGCAGCATCGGTTCCCAAATGATCTTCTTGGCTTAAAGATC 984
Query 947 AACAAGTTAGAAAAAGTTCTGAGCTCTTTAGGGAATGGAACCCGACAAACAGTAAGCTCT 1006
||||||| || |||||||||| |||||||||||||||||| ||||||||||| || |||
Sbjct 985 CACAAGTTGGAGAAAGTTCTGAACTCTTTAGGGAATGGAACACGACAAACAGTGAGTTCT 1044
Query 1007 GTAACAGCAAAACTAAAGGCATCAGGAATGGTACGGTTTCAGTTAGAGATCGAGAGAAGT 1066
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1045 GTAACAGCTAAACTAAAGGCATCAGGAATGGTACGGTTTCAGTTAGAGATCGAGAGAAGT 1104
Query 1067 ATTGGGAAGAACGAGAGTGTGTTAAGTAAAAGAGTAG-AGTGGAGAACAAAACCGAAGAT 1125
||||||||||| ||||||||| ||||||||| ||||| | ||||||||||||||||||||
Sbjct 1105 ATTGGGAAGAATGAGAGTGTGATAAGTAAAAAAGTAGCA-TGGAGAACAAAACCGAAGAT 1163
Query 1126 CGAACGGGTTTGGTTTGAAGTAACAGCGAAAATTGAAGGAGATAAGTTAAAAGCAGTGGG 1185
|||||||||||||||||||||||| |||||||| |||||||||||||| ||||||||| |
Sbjct 1164 CGAACGGGTTTGGTTTGAAGTAACGGCGAAAATCGAAGGAGATAAGTTGAAAGCAGTGAG 1223
Query 1186 GATGAGAAAAGTAGTGCCTTTCATAGAAGTGGATACAGAAGCATGGAGCAGTTTAATGTC 1245
| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1224 GCTGAGAAAAGTAGTGCCTTTCATTGAAGTGGATACAGAAGCATGGAGCAGTTTGATGTC 1283
Query 1246 TAACATGTCATTCACAAAGTTTCCATCATTACTTGTTCCTCAAGAAGCTTTAACACTCGA 1305
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1284 TAACATGTCATTCACAAAGTTTCCATCATTACTTGTTCCTCAAGAAGCTTTAACACTCGA 1343
Query 1306 TGTCAAATGGTAGGCGCAACACTTTTGTAAGTAACTTTGTCTAA-AGAATGGCAGGAACC 1364
|||||||||||||||||||||||||| || || | ||| | || ||||| ||||
Sbjct 1344 TGTCAAATGGTAGGCGCAACACTTTTATACGTTTGATAATCTTCCATAA-GGCAGAAACC 1402
Query 1365 ACAATGTAATGATGGATTGTATTTACTTGCGCTTGTATGTATGTATGTATATACTTCTGG 1424
||| ||||| ||||||||||||||||| || | | |||||||||||||||||||||||
Sbjct 1403 ACAGTGTAACGATGGATTGTATTTACT--CG-TCCT-TGTATGTATGTATATACTTCTGG 1458
Query 1425 TTCTATAAAGGATTATTTATCACGAAAATTGGTGAAAGGAGTTGTTACGAATCATTGCAT 1484
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1459 TTCTGTAAAGGATTATTTATCACGAAAACTGGTGAAAGGAGTTGTTACGAATCATTGCAT 1518
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73192394610
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5