BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473913
Length=926
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47720.1 | Symbols: OSB1 | Primosome PriB/single-strand DNA-... 1081 0.0
> AT1G47720.1 | Symbols: OSB1 | Primosome PriB/single-strand DNA-binding
| chr1:17561355-17562883 REVERSE LENGTH=969
Length=969
Score = 1081 bits (585), Expect = 0.0
Identities = 766/853 (90%), Gaps = 13/853 (2%)
Strand=Plus/Plus
Query 1 AAAATTCTCAAATTTTCCCAGTAGATGAACACGTTCTTCAAACTCGGAAGCTTAATCCAA 60
|||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAAAATCTCAAATTTCCCCAGTAGATGAACACGTTCTTCAAACTCGGAAGCTTAATCCAA 60
Query 61 CGCACTGCTTCTCAAATCTCTTCTTCTTTCCCTAAATCTCGCTTCTTCTCCGATGGAGAA 120
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 61 CGCACTGCTTCTCAAATCTCTTCTTCTTTCCCAAAATCTCGTTTCTTCTCCGATGGAGAA 120
Query 121 AGTGCCGTTTATCACCATGCGCGTTTGTTCAAGAAACCATTATCTACCAAGCTAAAATTC 180
||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 121 AGTGCTGTTTATCACCATGCGCGTTTGTTCAAGAAACCACTATCTACCAAGCTTAAATTC 180
Query 181 AATCTTGTGAACTCTGTGAGCCTTATGGGTTTCGTTGATCGACCCATACGAGTCATGGAC 240
|||||||||||||| ||||| ||||||||||||||||||||| | || | ||||||| ||
Sbjct 181 AATCTTGTGAACTCCGTGAGTCTTATGGGTTTCGTTGATCGATCTATTCAAGTCATGAAC 240
Query 241 ACCGGACCTGATAATTTCGGTGTTTTCACTATGCTTAGAGTTAAAGACCCTCTCATTCCA 300
||||||||||||| ||||||||||||||||| |||||||| ||||||||||||| ||||
Sbjct 241 ACCGGACCTGATAGGTTCGGTGTTTTCACTATTCTTAGAGTCAAAGACCCTCTCAATCCA 300
Query 301 AACCGGAGCTTTAGGATATCTCTTAGTATGTGGGACACAATGGCACGGACGTGTATCT-C 359
|||||||||||||||||||| ||||| ||||||||| ||||||||||||| ||||| | |
Sbjct 301 AACCGGAGCTTTAGGATATCACTTAGAATGTGGGACGCAATGGCACGGACTTGTAT-TGC 359
Query 360 GTATCTGAAGCCAAATGATCACATACTTGTCTCAGGCCGACTGGTTTCTCACAGCAAGAG 419
| ||||||||| ||||||||| ||||||||||||||||| || | ||| ||||||||||
Sbjct 360 GCATCTGAAGCTAAATGATCATATACTTGTCTCAGGCCGTCTTGAGTCTTACAGCAAGAG 419
Query 420 C-CCTCGCGATGAAAATAGCGGCTTAGATTTGGATTACCAGGTTAGAGTGACAGAGGTTA 478
| || |||||| | |||| |||||| || | ||||| ||||||| |||| |||| || |
Sbjct 420 CTCCA-GCGATGTATATAGTGGCTTAAATCTCGATTATCAGGTTAAAGTGGCAGAAGTGA 478
Query 479 ATTATGTGGCGGCTCCACCAAATCACGTCTTAGATTCTCAGA-ATTCCGAAAAACC-AGT 536
||||||||||||||||||||| |||||||||||||||||||| || || ||||||| |
Sbjct 479 ATTATGTGGCGGCTCCACCAAGTCACGTCTTAGATTCTCAGATAT-CC-AAAAACCCAAA 536
Query 537 ATC-AGAAGCAGAAGATGGTATAGAAGAATCCAAGATTGATAAGATATACTTGTGGCAAG 595
| | | || |||| |||| ||| ||||||||||||| ||| ||||||||||||||||||
Sbjct 537 AACGAAAA-CAGAGGATGATATTGAAGAATCCAAGAAAGATGAGATATACTTGTGGCAAG 595
Query 596 TCTTCTTTTCGAATCCATACGATTGGTGGGACAACAGGAGAAATAAGAAGAACCCAATGC 655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 596 TCTTCTTTTCGAATCCATACGATTGGTGGGACAACAGGAGAAATAAGAAGAACCCAAAGC 655
Query 656 AACCTGACTTTAAGCACAAAGATACAGGTGAAGCTCTCTGGCTT-GACTCGGATATACCG 714
|||| ||||||||||| ||||||||||||||||||||||||||| | ||| ||| |||||
Sbjct 656 AACCCGACTTTAAGCATAAAGATACAGGTGAAGCTCTCTGGCTTTG-CTCAGATTTACCG 714
Query 715 GATTGGATTAATAGACGACTTGAACTGTTTGACCAGAGAAACCGCTGTTACGATGAGGAA 774
|| ||||||| ||||||||||||| |||| ||||||| |||||||| ||||||||| |||
Sbjct 715 GACTGGATTACTAGACGACTTGAATTGTTCGACCAGAAAAACCGCTTTTACGATGAAGAA 774
Query 775 AAAACACGTCGTGGCCGTCTTTCTGAGTGGATTTAGGACTAT-TATTCTTGGGACATTAC 833
||||||||||||| |||||||||||| | ||||||||| | ||||||||||| |||||
Sbjct 775 AAAACACGTCGTGACCGTCTTTCTGACTATATTTAGGACGAGATATTCTTGGGAAATTAC 834
Query 834 AAGTCTGTTGCAT 846
|||| ||||||||
Sbjct 835 AAGTATGTTGCAT 847
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45260966447
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5