BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473914
Length=1303
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47740.1 | Symbols: | PPPDE putative thiol peptidase family... 1517 0.0
> AT1G47740.1 | Symbols: | PPPDE putative thiol peptidase family
protein | chr1:17566511-17569297 FORWARD LENGTH=1403
Length=1403
Score = 1517 bits (821), Expect = 0.0
Identities = 895/932 (96%), Gaps = 0/932 (0%)
Strand=Plus/Plus
Query 169 AAAGTTTCAGTCTCAGGTGGTTCACAGTTATTGCTACGCGTAATGATAAATCTATCTCAA 228
|||||||||||||||||||||||||||||| |||||| | |||||| |||| ||| |||
Sbjct 214 AAAGTTTCAGTCTCAGGTGGTTCACAGTTAATGCTACTTGCAATGATGAATCCATCCCAA 273
Query 229 TTTCGATAACCTCTACTGAGGCATCCAAATGTTGAACGGAAAGGAAGAGCCTAAGCAGAA 288
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 274 TTTCGATAACCTCTACTGAGGCATCCAAATGTTGAACGGAAAAGAAGAGCCTAAGCAGAA 333
Query 289 GAAAGGTTGGTCAGAGTCGCTGCTGGAATTTCGGTCAGGGTTTGGGGAAAAGATGAAAGT 348
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 334 GAAAGGTTGGTCAGAGTCGCTGCTAGAATTTCGGTCAGGGTTTGGGGAAAAGATGAAAGT 393
Query 349 TGTGTCGAAGAAACGTTGGAAATCTCTTGGACCTCTTCATCTGAAAAGCAAATCAGTCGC 408
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||
Sbjct 394 TGTGTCGAAGAAACGTTGGAAATCTCTTGGTCCTCTTCATCTGAAAAGCAAATCAGTTGC 453
Query 409 ACGGTTTTGCTTCTTTTCGAAATTGAAGTCAAACAACCATGGTCCAGGCCGTGCACCAGT 468
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 454 ACGGTTTTGCTTCTTTTCGAAGTTGAAGTCAAACAACCATGGTCCAGGCCGTGCACCAGT 513
Query 469 CTATCTCAATGTTTATGACTTGACTCCTATTAACGGATATATCTATTGGGTAGGCCTTGG 528
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 514 GTATCTCAATGTTTATGACTTGACTCCTATTAACGGATATATCTATTGGGCAGGCCTTGG 573
Query 529 TATATTTCACTCTGGTGTAGAAGTTCATGGAGTAGAATATGCTTTTGGTGCCCATGATTA 588
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 574 TATATTTCACTCTGGTGTAGAAGTTCATGGAGTAGAGTATGCTTTTGGTGCCCATGATTA 633
Query 589 TGCAACGAGTGGTGTTTTTGAGGTGGAACCACGGCAGTGCCCGGGTTTCAAGTTCAAGAA 648
|||||||||||||||||||||||| |||||| |||| |||||||| ||||||||||||||
Sbjct 634 TGCAACGAGTGGTGTTTTTGAGGTTGAACCAAGGCAATGCCCGGGCTTCAAGTTCAAGAA 693
Query 649 ATCGATATTCATTGGAACCACAAATTTAAACCCAACACAAGTGAGAGAGTTTATGGAGGA 708
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 694 ATCGATATTCATTGGAACCACGAATTTAAACCCAACACAAGTGAGAGAGTTTATGGAAGA 753
Query 709 CATGGCTTGCAGTTACTATGGTAATATGTATCACTTGATTGTAAAGAACTGCAACCATTT 768
|||||||||||||||||| || |||||||||||||||||||| |||||||||||||||||
Sbjct 754 CATGGCTTGCAGTTACTACGGGAATATGTATCACTTGATTGTTAAGAACTGCAACCATTT 813
Query 769 CTGCCAGGACGTTTGCTACAAGCTTACCGGGAAAAAGATCCCAAAATGGGTGAATCGGCT 828
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 814 CTGCCAGGACGTTTGCTACAAGCTTACCGGGAAAAAGATCCCAAAATGGGTGAATCGGCT 873
Query 829 CGCACAAATAGGTTCTGTGTGCAGCTGCATACTTCCCGAGTCCCTCAAGATAACAGCGGT 888
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 TGCACAAATAGGTTCTGTGTGCAGCTGCATACTTCCCGAGTCCCTCAAGATAACAGCGGT 933
Query 889 TTGCCATGATCCAGACGGACAAATTCCAGAGGAAGAAAACGAAAAGAGAAGTCTTAGAAG 948
||||| ||||||||||| ||||| || ||||||||||||||||||||||||||||||||
Sbjct 934 CTGCCACGATCCAGACGGGCAAATCCCGGAGGAAGAAAACGAAAAGAGAAGTCTTAGAAG 993
Query 949 CTCATTCAGCTGTTTATCCTCCATCTCCATGAGACAAAAACAGCTTTCGACATCATCATT 1008
|||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||
Sbjct 994 CTCATTCAGCTGTTTATCATCCATCTCCATGAGACAAAAACAGCTTTCAACATCATCATT 1053
Query 1009 GTTCCTACAATCACCTCTCAGAGGCTGCTTACCTCCATGGCAACTGAAACGCTCAAAATC 1068
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1054 GTTCCTACAATCACCTCTCAGAGGCTGCTTACCTCCTTGGCAACTCAAACGCTCAAAATC 1113
Query 1069 TAACAGTGGTTCCTTGAAAGAAAGGTAGACAT 1100
|||||| | ||||||||||||||||||||||
Sbjct 1114 TAACAGCAGCTCCTTGAAAGAAAGGTAGACAT 1145
Score = 287 bits (155), Expect = 2e-76
Identities = 189/205 (92%), Gaps = 4/205 (2%)
Strand=Plus/Plus
Query 1101 CGATTTATCTTTCTTCTATCTTTGTAAGAGGAGTTCGAAAACAGATTTCCCGGGCCATCG 1160
||||||||| ||||||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 1198 CGATTTATCCTTCTTCTATCTTTGTAA-TGGAGTTCGAAAACAGATTTCCCGCGCCATCG 1256
Query 1161 CTTTCTTATTTCATTTTAACAGGCTTTCATAAGCCATTCTTCTTCTTCTCTCTGTTTGTA 1220
|||| | |||| |||||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct 1257 CTTT-TCATTTGATTTTAACAGGCTTTCATAAGCCATTCTTCATCTTCTTTCTGTTTGTA 1315
Query 1221 TTGCTTCCAAATTTGGATCTTTTCTCATTT--AAAATCTTGTATTGCATCAACTCTGTTT 1278
||||||||||||||| |||||||||||||| |||||| |||||||||||||| ||||||
Sbjct 1316 TTGCTTCCAAATTTGAATCTTTTCTCATTTTCAAAATCATGTATTGCATCAACGCTGTTT 1375
Query 1279 ATATCTAAATTAGCTTTCTTAGTTC 1303
||||||||| ||||| |||||||||
Sbjct 1376 ATATCTAAACTAGCTCTCTTAGTTC 1400
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64106095965
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5