BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473916
Length=870
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47750.1 | Symbols: PEX11A | peroxin 11A | chr1:17569256-175... 1216 0.0
> AT1G47750.1 | Symbols: PEX11A | peroxin 11A | chr1:17569256-17570159
REVERSE LENGTH=904
Length=904
Score = 1216 bits (658), Expect = 0.0
Identities = 744/786 (95%), Gaps = 4/786 (1%)
Strand=Plus/Plus
Query 1 AATTGAAAAAGCTCCATCTCCTCCAATGGCTGCAAAAGGTCCAGAGAAAATCACCAAACC 60
||||||||||||||||||||||||||||||| | |||| |||||||||||||||||||||
Sbjct 1 AATTGAAAAAGCTCCATCTCCTCCAATGGCTACGAAAGCTCCAGAGAAAATCACCAAACC 60
Query 61 CAAAGACAGAGATTTCCTAAACCATCTCGAAACATACCTCTCCAAAAGAGATGGCGTAGA 120
|||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||
Sbjct 61 AAAAGACAGAGATTTCCTAAATCATCTCGAAACATATCTCTCCAAAAGAGATGGTGTAGA 120
Query 121 CAAACTCCT-AAAGATCTCTCGTTACGCAACCAAAATCATCCTCGCATCATCTCTAATCC 179
||||||||| ||| ||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 121 CAAACTCCTGAAA-ATCTCTCGTTACGCAACAAAAATCATCCTCGCATCATCACTAATCC 179
Query 180 CAGAATCCAGATCCATAATTCCCCGTCTCAAAAGCTTCGAATCAAGCGTCGGAGTCAGTC 239
||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct 180 CAGAAACCAGATCCATAATCCCCCGACTCAAAAGCTTCGAATCAAGCGTCGGAGTCAGTC 239
Query 240 GCAAAGCCTTCCGTCTCGGAAAATTCGTACAAGACATCAACGCTTTAAGATCTTCACGAT 299
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 240 GCAAAGCCTTCCGTCTCGGAAAATTCGTACAAGACATCAACGCATTAAGATCCTCACGAT 299
Query 300 GGGATTCAAATCACGAGCTCGTATTACTCCTAATCGCGTACGGTGGTGAAGGATTATACT 359
|||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||
Sbjct 300 GGGATTCAAATCACGAGCTCGTCTTACTCATAATCGCGTACGGTGGTGAAGGATTATACT 359
Query 360 ATTTCGTCGAACAATTCATTTGGTTAACGAAATCAGGATTGATCGATGCGAAACATTCGA 419
||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 360 ATTTCGTTGAACAATTCATATGGTTAACGAAATCAGGACTGATCGATGCGAAACATTCGA 419
Query 420 AATGGCTTCAGAAGATCAGTGCTTGGGCTGAATTGGTTGGTTATGTTGGAAGTGTTTCGA 479
|||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||
Sbjct 420 AATGGCTTCAGAAGATTAGTGCTTGGGCTGAATTGGTTGGTTATGTAGGAAGTGTTTCGA 479
Query 480 TAAAGATTAGGGATTTGAGGAAATTGAATGATGAAGAGAGGTGTGTTGCTTCGACAATTG 539
| |||||||||||||||||||||||||||||||||||||| |||||||||||||| || |
Sbjct 480 TTAAGATTAGGGATTTGAGGAAATTGAATGATGAAGAGAGTTGTGTTGCTTCGACGATCG 539
Query 540 AGATCTCGGTTTCGAGAGGATTAGCTTGTGATGGAGATGATGAGAAGATGAAGATGATTA 599
|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||
Sbjct 540 AGATCTCGGTTTCGAGAGGATTAGCTTGTGATGGTGAAGATGAGAAGATGAAGATGATTA 599
Query 600 AGGAGAAGAAGACATTGAAGGTTTTATCGATTTTGCAGGAT-TTGGCTGATGGATTGATG 658
|||||||||||||||||||||||||||| |||||||||||| ||| ||||||| ||||||
Sbjct 600 AGGAGAAGAAGACATTGAAGGTTTTATCTATTTTGCAGGATCTTG-CTGATGGTTTGATG 658
Query 659 ACGGTTGCAGATGTTCGGGATGGTAAGGGAGTGTTATCGGCTCCGAATGTGATTTCTTCT 718
||| |||| ||| |||| |||||||||||||||||||||||||| |||||||| ||||||
Sbjct 659 ACGATTGCTGATATTCGTGATGGTAAGGGAGTGTTATCGGCTCCTAATGTGATATCTTCT 718
Query 719 GCAGGTTTGTTTTCGGCGATTGTTAGTACTCATAAGAACTGGATCTCTTGTTGATGATGA 778
|||||||||||||| || |||||||||||||||||||||||||||||||||||||||| |
Sbjct 719 GCAGGTTTGTTTTCTGCTATTGTTAGTACTCATAAGAACTGGATCTCTTGTTGATGATCA 778
Query 779 TGATGA 784
||||||
Sbjct 779 TGATGA 784
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42447854215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5