BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473918
Length=561
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47786.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 771 0.0
AT1G47780.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 510 5e-144
> AT1G47786.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr1:17597898-17599099 FORWARD LENGTH=561
Length=561
Score = 771 bits (417), Expect = 0.0
Identities = 516/564 (91%), Gaps = 6/564 (1%)
Strand=Plus/Plus
Query 1 ATGTTTCTTCCATACTTTTCAAAGTTGTTGGACTATTTTCTCTCATATATTTATTACGTG 60
||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1 ATGTTTCTTGCATACTTTTCAAAGTTGTTGGACTATATTCTCTCCTATATTTATTACGTG 60
Query 61 GAACTGATTAATGAATTTGCCTATGTTAAACTTTTTACAGCTAGTAGAAATGTAAGGGGT 120
|||||||||||||||| ||| ||||||||||||||||||||| ||||||||||| |||||
Sbjct 61 GAACTGATTAATGAATCTGCGTATGTTAAACTTTTTACAGCTCGTAGAAATGTAGGGGGT 120
Query 121 ATTAAATTTGAAGACGTTCTATCTTTTGGACCCATAGGAACTCATAAGGCCACTATAGTC 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATTAAATTTGAAGACGTTCAATCTTTTGGACCCATAGGAACTCATAAGGCCACTATAGTC 180
Query 181 TGGCTACATGATATCGGCGAGACAAGCGCTAATTCAACTCGATTTGCGAGACAGATGGGT 240
||||| ||||||||||||||||||||||| ||||| |||||||||||||||| |||||
Sbjct 181 TGGCTGCATGATATCGGCGAGACAAGCGCAAATTCGGTTCGATTTGCGAGACAGTTGGGT 240
Query 241 CTTAAAAACATTAAGTGGATTTGCCCAACTGCTCCTTCACGCCCCATTACTATCTTAGGT 300
||| ||| |||||||||||||| |||||||||||| ||||||| ||||||||||||||
Sbjct 241 CTTCGAAATATTAAGTGGATTTGTCCAACTGCTCCTAGACGCCCCGTTACTATCTTAGGT 300
Query 301 GGAATGGAAACCAATGCATGGTTCGATATCGCAGAAATTTCTGAAAACATGCAAGATGAT 360
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 301 GGAATGGAAACCAATGCATGGTTCGATATTGCAGAAATTTCTGAAAACATGCAAGATGAT 360
Query 361 GTGGAGTCATTAAATCATGCTGCTTTATCCATTGCTAACCTTTTATCTGAAGAA-C--CC 417
| || ||||||| ||||||| |||||||| |||||||||||||| ||||| | | ||
Sbjct 361 GAGGTGTCATTACATCATGCAGCTTTATCTATTGCTAACCTTTTTTCTGATCATGCTTCC 420
Query 418 CCAAACAGAATAGGAGGTATCGGCTTGGGTGCAGCGCAAGCTCTCTACCTTGCGAGTAAG 477
||||| | |||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 421 CCAAATA---TAGGAGGTATGGGCATGGGTGCAGCGCAAGCTCTCTACCTTGCGAGTAAG 477
Query 478 GGTTGTTATGACACTAATCAACGGCTTCAGATAAGGCCACGAGTTGTTATAGGGCTCAAT 537
|||| ||||||||||||||||||||||| |||| ||||||||||||||||||||| ||
Sbjct 478 AGTTGCTATGACACTAATCAACGGCTTCAAATAAAGCCACGAGTTGTTATAGGGCTTAAA 537
Query 538 GGTTGGCTTCCTGTCTGGAGGTAG 561
|| |||||||||| ||||||||||
Sbjct 538 GGATGGCTTCCTGGCTGGAGGTAG 561
> AT1G47780.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr1:17594683-17595343 FORWARD LENGTH=381
Length=381
Score = 510 bits (276), Expect = 5e-144
Identities = 302/315 (96%), Gaps = 0/315 (0%)
Strand=Plus/Plus
Query 247 AACATTAAGTGGATTTGCCCAACTGCTCCTTCACGCCCCATTACTATCTTAGGTGGAATG 306
||| |||||||||||||||||||||||||| ||||||| |||||||| |||||||||||
Sbjct 67 AACGTTAAGTGGATTTGCCCAACTGCTCCTAGACGCCCCCTTACTATCCTAGGTGGAATG 126
Query 307 GAAACCAATGCATGGTTCGATATCGCAGAAATTTCTGAAAACATGCAAGATGATGTGGAG 366
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct 127 GAAACCAATGCATGGTTCGATATCGCAGAACTTTCTGAAAACATGCAAGATGATGTGGCG 186
Query 367 TCATTAAATCATGCTGCTTTATCCATTGCTAACCTTTTATCTGAAGAACCCCCAAACAGA 426
||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||
Sbjct 187 TCATTAAATCATGCTGCTTTATCTATTGCTAACCTTTTATCTGAAGAACCCACAAACGGA 246
Query 427 ATAGGAGGTATCGGCTTGGGTGCAGCGCAAGCTCTCTACCTTGCGAGTAAGGGTTGTTAT 486
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 247 ATAGGAGGTATCGGCTTTGGTGCAGCGCAAGCTCTCTACCTTGCGAGTAAGGGTTGTTAT 306
Query 487 GACACTAATCAACGGCTTCAGATAAGGCCACGAGTTGTTATAGGGCTCAATGGTTGGCTT 546
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 307 GACACTAATCAACGGCTTCAAATAAAGCCACGAGTTGTTATAGGGCTCAATGGTTGGCTT 366
Query 547 CCTGTCTGGAGGTAG 561
|||||||||||||||
Sbjct 367 CCTGTCTGGAGGTAG 381
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26925502792
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5