BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473920
Length=378
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47820.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 503 5e-142
AT1G47813.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 156 2e-37
> AT1G47820.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G47813.1);
Has 29 Blast hits to 29 proteins in 9 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17612038-17612548
FORWARD LENGTH=511
Length=511
Score = 503 bits (272), Expect = 5e-142
Identities = 302/316 (96%), Gaps = 3/316 (1%)
Strand=Plus/Plus
Query 41 CTTTAGTTTTAATTTCAGGGTTGACATGGAGATTGAGAGTCACGATTCAGTCCCTGGGAA 100
||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||
Sbjct 52 CTTTAGTTTTAATTTCAGGGTAGATATGGAGATTGAGAGTCACGTTTCAGTCCCTGGGAA 111
Query 101 GAATCTAGTTAAAGTCGAGTTCAAGCTTGGGACAGAGAGCTTCACAATTGATTCAAACAA 160
||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 112 GAATCTAGTTAAAGTAGAGTTCAAGCTTGGGACAGAGAGCTACACAATTGATTCAATCAA 171
Query 161 GGGTAATACTGTATTGGATCAATTGGTTTCGATGAAAGAAGAAAGTATGAAGATACTTAA 220
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 172 GGGTGATACTGTATTGGACCAATTGGTTTCGATGAAAGAAGAAAGTATGAAGATACTTAA 231
Query 221 AGATTTTATCACAAAGCATAATGTTCAAGATGATGATGTCCCTGACCAAATCTTGTCTGA 280
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 232 GGATTTTATCACAAAGCATAATGTTCCAGATGATGATGTCCCTGACCAAATCTTGTCTGA 291
Query 281 TGAAGAAGAAGGTGATGATGATGATGCTTCTCCTGTAATATGTCCTGTGAAACC-C--AA 337
||| |||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 292 TGATGAAGAAGGTGATGATGATGATGCTTCTCCTGTAATATGTCCTGTGAAACCACCCAA 351
Query 338 GAAGACAAAGATTTGA 353
||||||||||||||||
Sbjct 352 GAAGACAAAGATTTGA 367
> AT1G47813.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G47820.2);
Has 9 Blast hits to 9 proteins in 2 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 9; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17606558-17606818
FORWARD LENGTH=195
Length=195
Score = 156 bits (84), Expect = 2e-37
Identities = 98/105 (93%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 66 ATGGAGATTGAGAGTCACGATTCAGTCCCTGGGAAGAATCTAGTTAAAGTCGAGTTCAAG 125
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct 1 ATGGAGATTGAGAGTCACGTTTCAGTCCCTGGGAAGAATCTAGTTAAAGTAGAGTTCAAG 60
Query 126 CTTGGGACAGAGAGCTTCACAATTGATTCAAACAAGGGTAATACT 170
|||||||||||||||| ||| |||||||||| ||| ||| |||||
Sbjct 61 CTTGGGACAGAGAGCTACACTATTGATTCAATCAATGGTGATACT 105
Score = 82.4 bits (44), Expect = 3e-15
Identities = 46/47 (98%), Gaps = 0/47 (0%)
Strand=Plus/Plus
Query 237 CATAATGTTCAAGATGATGATGTCCCTGACCAAATCTTGTCTGATGA 283
|||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 106 CATAATGTTCAAGATGATGATGTCCCTGACCAAATCTTGTCTAATGA 152
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 17794783146
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5