BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473927
Length=192
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48400.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 302 1e-81
AT1G47915.1 | Symbols: | F-box family protein | chr1:17660752-... 294 2e-79
AT1G47960.1 | Symbols: C/VIF1, ATC/VIF1 | cell wall / vacuolar ... 252 1e-66
AT1G47950.1 | Symbols: | transposable element gene | chr1:1767... 252 1e-66
AT4G27050.1 | Symbols: | F-box/RNI-like superfamily protein | ... 119 1e-26
> AT1G48400.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr1:17882136-17883855 REVERSE LENGTH=1542
Length=1542
Score = 302 bits (163), Expect = 1e-81
Identities = 181/190 (95%), Gaps = 0/190 (0%)
Strand=Plus/Plus
Query 1 ATGAGAAGTTCTGCTAGAGATTCGATAAGCAATTTGCCAGATGAGATTCTTGGCAAAATC 60
||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 10 ATGAGAACTTCTCCTAGAGATTCGATAAGCAATTTGCCAGATGAGATTCTTGGCAAAATC 69
Query 61 TTGTCTTTGCTTCCGACAAAAGTGGCTGCTTCCACATCGATTCTGTCCAAGAGGTGGAGG 120
||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 70 TTGTCTTTGCTCCCGACAAAAGTGGCTGCTTCCACATCGGTTCTGTCCAAGAGGTGGAGG 129
Query 121 AATCTGCTGGGTCTTGTAGACAACCTTTGTTTTGATGAGTCGATGGTTGTGTATCCCAAT 180
|||||| ||||||||||||||||||| || |||||||||||||||||||| ||||||||
Sbjct 130 AATCTGTTGGGTCTTGTAGACAACCTCTGCTTTGATGAGTCGATGGTTGTTTATCCCAAC 189
Query 181 GAAGAAGAAG 190
||||||||||
Sbjct 190 GAAGAAGAAG 199
> AT1G47915.1 | Symbols: | F-box family protein | chr1:17660752-17660973
FORWARD LENGTH=222
Length=222
Score = 294 bits (159), Expect = 2e-79
Identities = 181/192 (94%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 1 ATGAGAAGTTCTGCTAGAGATTCGATAAGCAATTTGCCAGATGAGATTCTTGGCAAAATC 60
||||||| |||| |||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 4 ATGAGAACTTCTCCTAGAGATTCGATAAGCAATTTGCCAGATGAGATACTTGGCAAAATC 63
Query 61 TTGTCTTTGCTTCCGACAAAAGTGGCTGCTTCCACATCGATTCTGTCCAAGAGGTGGAGG 120
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 64 TTGTCTTTGCTTCCGACAAAAGTGGCTGCTTCCACATCGGTTCTGTCCAAGAGGTGGAGG 123
Query 121 AATCTGCTGGGTCTTGTAGACAACCTTTGTTTTGATGAGTCGATGGTTGTGTATCCCAAT 180
|||||||| ||||||||||||||||| || |||||||||||| ||||||| ||||||||
Sbjct 124 AATCTGCTAGGTCTTGTAGACAACCTCTGCTTTGATGAGTCGGTGGTTGTTTATCCCAAC 183
Query 181 GAAGAAGAAGCT 192
|||||||||||
Sbjct 184 AAAGAAGAAGCT 195
> AT1G47960.1 | Symbols: C/VIF1, ATC/VIF1 | cell wall / vacuolar
inhibitor of fructosidase 1 | chr1:17681157-17683629 REVERSE
LENGTH=1528
Length=1528
Score = 252 bits (136), Expect = 1e-66
Identities = 173/191 (91%), Gaps = 2/191 (1%)
Strand=Plus/Plus
Query 1 ATGAGAAGTTCTGCTAGAGATTCGATAAGCAATTTGCCAGATGAGATTCTTGGCAAAATC 60
||||||||| || || | ||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 741 ATGAGAAGTGCTCCTCGGGATTCGATAAGCAGTTTGCCAGATGAGATACTTGGCAAAATC 800
Query 61 TTGTCTTTGCTTCCGACAAAAGTGGCTGCTTCCACATCGATTCTGTCCAAGAGGTGGAGG 120
|||||||| ||||||| ||||||||||||| |||||| |||||||||||||||||| |
Sbjct 801 CTGTCTTTGATTCCGAC--AAGTGGCTGCTTCGACATCGGTTCTGTCCAAGAGGTGGAAG 858
Query 121 AATCTGCTGGGTCTTGTAGACAACCTTTGTTTTGATGAGTCGATGGTTGTGTATCCCAAT 180
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 859 AATCTGCTATGTCTTGTAGACAACCTTTGTTTTGATGAGTCGATGGTTGTTTATCCCAAC 918
Query 181 GAAGAAGAAGC 191
|| ||||||||
Sbjct 919 GATGAAGAAGC 929
> AT1G47950.1 | Symbols: | transposable element gene | chr1:17675488-17681953
REVERSE LENGTH=6466
Length=6466
Score = 252 bits (136), Expect = 1e-66
Identities = 173/191 (91%), Gaps = 2/191 (1%)
Strand=Plus/Plus
Query 1 ATGAGAAGTTCTGCTAGAGATTCGATAAGCAATTTGCCAGATGAGATTCTTGGCAAAATC 60
||||||||| || || | ||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 10 ATGAGAAGTGCTCCTCGGGATTCGATAAGCAGTTTGCCAGATGAGATACTTGGCAAAATC 69
Query 61 TTGTCTTTGCTTCCGACAAAAGTGGCTGCTTCCACATCGATTCTGTCCAAGAGGTGGAGG 120
|||||||| ||||||| ||||||||||||| |||||| |||||||||||||||||| |
Sbjct 70 CTGTCTTTGATTCCGAC--AAGTGGCTGCTTCGACATCGGTTCTGTCCAAGAGGTGGAAG 127
Query 121 AATCTGCTGGGTCTTGTAGACAACCTTTGTTTTGATGAGTCGATGGTTGTGTATCCCAAT 180
|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 128 AATCTGCTATGTCTTGTAGACAACCTTTGTTTTGATGAGTCGATGGTTGTTTATCCCAAC 187
Query 181 GAAGAAGAAGC 191
|| ||||||||
Sbjct 188 GATGAAGAAGC 198
> AT4G27050.1 | Symbols: | F-box/RNI-like superfamily protein
| chr4:13575800-13578051 REVERSE LENGTH=1899
Length=1899
Score = 119 bits (64), Expect = 1e-26
Identities = 129/159 (81%), Gaps = 10/159 (6%)
Strand=Plus/Plus
Query 24 GATAAGCAATTTGCCAGATGA-GATTCTTGGCAAAATCTTGTCTTT-GCTTCCGACAAAA 81
||| |||||| | || ||||| | |||||||||||||| ||||||| | ||||||| |||
Sbjct 468 GATCAGCAATCTCCCCGATGATG-TTCTTGGCAAAATCCTGTCTTTAG-TTCCGAC-AAA 524
Query 82 G-TGGCTGCTTCCACATCGATTCTGTCCAAGAGGTGGAGGAATCTGCTGG-GTCTTGTAG 139
| | |||||| | || ||| |||||||||||||||||||||||||||| | |||||||
Sbjct 525 GCTTGCTGCTGCAACGTCGGTTCTGTCCAAGAGGTGGAGGAATCTGCTTCCG-CTTGTAG 583
Query 140 ACAACCTTTG-TTTTGATGAGTCGATGGTTGTGTATCCC 177
| | |||| | |||||| || ||||| || | ||||||
Sbjct 584 ATAGCCTT-GATTTTGACGAAACGATGCTTTTCTATCCC 621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8500928319
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5