BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473928
Length=195
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48400.1 | Symbols: | F-box/RNI-like/FBD-like domains-conta... 244 2e-64
AT1G48390.1 | Symbols: | RNI-like superfamily protein | chr1:1... 241 2e-63
AT5G12450.1 | Symbols: | FBD-like domain family protein | chr5... 217 4e-56
AT1G47920.1 | Symbols: | RNI-like superfamily protein | chr1:1... 213 5e-55
> AT1G48400.1 | Symbols: | F-box/RNI-like/FBD-like domains-containing
protein | chr1:17882136-17883855 REVERSE LENGTH=1542
Length=1542
Score = 244 bits (132), Expect = 2e-64
Identities = 164/180 (91%), Gaps = 0/180 (0%)
Strand=Plus/Plus
Query 1 GTGCTAGAGATTTCAGAGTATGGAGGTTCTTTTCTAGAGCTGAAACAGATGAGACATTTC 60
|||||| ||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1348 GTGCTACAGATTTCAGAGTATGGAGGTTATTTTCAAGAGCTGAAACAGATGAGACATTTC 1407
Query 61 TTGGGGAAGTTGAAATGTCTTGAAACTGTGAAAGTTGGTGTTGATGCGGACAACGACAAC 120
||||| |||||| ||||||||||||| ||||||||||||||| | || || ||| |||||
Sbjct 1408 TTGGGCAAGTTGGAATGTCTTGAAACCGTGAAAGTTGGTGTTCACGCAGAAAACAACAAC 1467
Query 121 AACAGTGAGTTCTTGCGAGCTAATCTGCTGGCTCTCCCCAGACTTTCATCAAAGTGCAAC 180
|||||||||||||||||||||||| ||||| |||| |||||| ||||| |||||||||||
Sbjct 1468 AACAGTGAGTTCTTGCGAGCTAATGTGCTGACTCTTCCCAGAGTTTCAGCAAAGTGCAAC 1527
> AT1G48390.1 | Symbols: | RNI-like superfamily protein | chr1:17879448-17880903
REVERSE LENGTH=1242
Length=1242
Score = 241 bits (130), Expect = 2e-63
Identities = 160/175 (91%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 7 GAGATTTCAGAGTATGGAGGTTCTTTTCTAGAGCTGAAACAGATGAGACATTTCTTGGGG 66
|||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||
Sbjct 1051 GAGATTTCAGAGTATGGAGGTTCTTTTCAAGAGCTGGAACAGATGAGACATTTCTTGGGC 1110
Query 67 AAGTTGAAATGTCTTGAAACTGTGAAAGTTGGTGTTGATGCGGACAACGACAACAACAGT 126
|||||| || |||||||||||||||||||||||||| | || || ||| | ||||||| |
Sbjct 1111 AAGTTGGAACGTCTTGAAACTGTGAAAGTTGGTGTTCACGCAGAAAACAATAACAACAAT 1170
Query 127 GAGTTCTTGCGAGCTAATCTGCTGGCTCTCCCCAGACTTTCATCAAAGTGCAACA 181
|||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||
Sbjct 1171 GAGTTCTTGCGAGCTAATCTACTGACTCTCCCCAGACTCTCATCAAAGTGCAACA 1225
> AT5G12450.1 | Symbols: | FBD-like domain family protein | chr5:4040937-4041128
FORWARD LENGTH=192
Length=192
Score = 217 bits (117), Expect = 4e-56
Identities = 168/191 (88%), Gaps = 9/191 (5%)
Strand=Plus/Plus
Query 2 TGCTAGAGATTTCAGAGTATGGAGGTTCTTTTCTAGAGCTGAAACAGATGAGACATTTCT 61
||| ||||||||| |||| |||||||||||||| ||||||| | ||||||||||||||||
Sbjct 2 TGCAAGAGATTTCTGAGTGTGGAGGTTCTTTTCAAGAGCTGGATCAGATGAGACATTTCT 61
Query 62 TGGGGAA-GTTGAAATGTCTTGAAACTGTGAAAGTTGGTGTTGATGCGGACA-ACGACAA 119
| ||||| |||| |||||||||||||||||||||||||||||| || | || | |||||
Sbjct 62 T-GGGAATGTTGGAATGTCTTGAAACTGTGAAAGTTGGTGTTG-TG-G-ACGCA-GACAA 116
Query 120 CAACAGTGAGTTCTTGCGAGCTAATCTGCTGGCTCTCCCCAGACTTTCATCA-AAGTGCA 178
||||||| || |||||||||||||||||||| ||||||||| |||||||||| || ||||
Sbjct 117 CAACAGTAAGCTCTTGCGAGCTAATCTGCTGTCTCTCCCCAAACTTTCATCAGAA-TGCA 175
Query 179 ACATTCAGTTC 189
|||| || |||
Sbjct 176 ACATCCAATTC 186
> AT1G47920.1 | Symbols: | RNI-like superfamily protein | chr1:17661095-17662394
FORWARD LENGTH=1140
Length=1140
Score = 213 bits (115), Expect = 5e-55
Identities = 173/199 (87%), Gaps = 11/199 (6%)
Strand=Plus/Plus
Query 1 GTGCTAGAGATTTCAGAGTATGGA-GGTTCTTTTCTAGAGCTGAAACAGATGAGACATTT 59
||||| ||||||||| |||| || |||||||||| |||||||||||||||| |||||||
Sbjct 949 GTGCTGGAGATTTCAAAGTA-CGATGGTTCTTTTCAAGAGCTGAAACAGATGGGACATTT 1007
Query 60 CTTGGGGAAGTTGAAATGTCTTGAAACTGTGAAAGTTGGTGTTGATGCGGACAACGACAA 119
||||| || ||| |||||||||| ||||||||||||||||| | |||||| | ||||
Sbjct 1008 ATTGGGCAAATTGGGATGTCTTGAATCTGTGAAAGTTGGTGTTCACGCGGAC-A--ACAA 1064
Query 120 CAACAGTGAGTTCTTGCGAGCTAATCTGCTGGCTCTCCCCAGACTTTCATCAAAGTGCAA 179
| || ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 C-AC--TGAGTTCTTGCAAGCTAATCTGCTGGCTCTCCCCAGACTTTCATCAAAGTGCAA 1121
Query 180 CA-T-TC-AGTTCGGCTGA 195
|| | || ||||| |||||
Sbjct 1122 CAATATCCAGTTCAGCTGA 1140
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8651832372
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5