BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473930
Length=191
Score E
Sequences producing significant alignments: (Bits) Value
AT1G47915.1 | Symbols: | F-box family protein | chr1:17660752-... 287 3e-77
AT1G47960.1 | Symbols: C/VIF1, ATC/VIF1 | cell wall / vacuolar ... 246 5e-65
AT1G47950.1 | Symbols: | transposable element gene | chr1:1767... 246 5e-65
AT1G64540.1 | Symbols: | F-box/FBD-like domains containing pro... 150 4e-36
AT5G35995.1 | Symbols: | F-box/RNI-like superfamily protein | ... 119 1e-26
AT4G27050.1 | Symbols: | F-box/RNI-like superfamily protein | ... 113 5e-25
> AT1G47915.1 | Symbols: | F-box family protein | chr1:17660752-17660973
FORWARD LENGTH=222
Length=222
Score = 287 bits (155), Expect = 3e-77
Identities = 179/191 (94%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 1 ATGAGAAGTTCTGCTAGAGATTCGATCAGCAATTTGCCAGATGAGATACTTGGCAAAATC 60
||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 4 ATGAGAACTTCTCCTAGAGATTCGATAAGCAATTTGCCAGATGAGATACTTGGCAAAATC 63
Query 61 TTGTCTTTGCTTCCGACAAAAGTGGCTGCTTCGACATCTGTTCTGTCCAAGAGGTGGAGG 120
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 64 TTGTCTTTGCTTCCGACAAAAGTGGCTGCTTCCACATCGGTTCTGTCCAAGAGGTGGAGG 123
Query 121 AATCTGCTGGGTCTTGTAGACACCCTTTCCTTTGATGAGTCGATGGTTGTGTATCCCAAC 180
|||||||| ||||||||||||| ||| | ||||||||||||| ||||||| |||||||||
Sbjct 124 AATCTGCTAGGTCTTGTAGACAACCTCTGCTTTGATGAGTCGGTGGTTGTTTATCCCAAC 183
Query 181 GAAGAAGAAGC 191
||||||||||
Sbjct 184 AAAGAAGAAGC 194
> AT1G47960.1 | Symbols: C/VIF1, ATC/VIF1 | cell wall / vacuolar
inhibitor of fructosidase 1 | chr1:17681157-17683629 REVERSE
LENGTH=1528
Length=1528
Score = 246 bits (133), Expect = 5e-65
Identities = 172/191 (90%), Gaps = 2/191 (1%)
Strand=Plus/Plus
Query 1 ATGAGAAGTTCTGCTAGAGATTCGATCAGCAATTTGCCAGATGAGATACTTGGCAAAATC 60
||||||||| || || | |||||||| |||| ||||||||||||||||||||||||||||
Sbjct 741 ATGAGAAGTGCTCCTCGGGATTCGATAAGCAGTTTGCCAGATGAGATACTTGGCAAAATC 800
Query 61 TTGTCTTTGCTTCCGACAAAAGTGGCTGCTTCGACATCTGTTCTGTCCAAGAGGTGGAGG 120
|||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||| |
Sbjct 801 CTGTCTTTGATTCCGACAA--GTGGCTGCTTCGACATCGGTTCTGTCCAAGAGGTGGAAG 858
Query 121 AATCTGCTGGGTCTTGTAGACACCCTTTCCTTTGATGAGTCGATGGTTGTGTATCCCAAC 180
|||||||| |||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 859 AATCTGCTATGTCTTGTAGACAACCTTTGTTTTGATGAGTCGATGGTTGTTTATCCCAAC 918
Query 181 GAAGAAGAAGC 191
|| ||||||||
Sbjct 919 GATGAAGAAGC 929
> AT1G47950.1 | Symbols: | transposable element gene | chr1:17675488-17681953
REVERSE LENGTH=6466
Length=6466
Score = 246 bits (133), Expect = 5e-65
Identities = 172/191 (90%), Gaps = 2/191 (1%)
Strand=Plus/Plus
Query 1 ATGAGAAGTTCTGCTAGAGATTCGATCAGCAATTTGCCAGATGAGATACTTGGCAAAATC 60
||||||||| || || | |||||||| |||| ||||||||||||||||||||||||||||
Sbjct 10 ATGAGAAGTGCTCCTCGGGATTCGATAAGCAGTTTGCCAGATGAGATACTTGGCAAAATC 69
Query 61 TTGTCTTTGCTTCCGACAAAAGTGGCTGCTTCGACATCTGTTCTGTCCAAGAGGTGGAGG 120
|||||||| ||||||||| ||||||||||||||||| ||||||||||||||||||| |
Sbjct 70 CTGTCTTTGATTCCGACAA--GTGGCTGCTTCGACATCGGTTCTGTCCAAGAGGTGGAAG 127
Query 121 AATCTGCTGGGTCTTGTAGACACCCTTTCCTTTGATGAGTCGATGGTTGTGTATCCCAAC 180
|||||||| |||||||||||| ||||| |||||||||||||||||||| |||||||||
Sbjct 128 AATCTGCTATGTCTTGTAGACAACCTTTGTTTTGATGAGTCGATGGTTGTTTATCCCAAC 187
Query 181 GAAGAAGAAGC 191
|| ||||||||
Sbjct 188 GATGAAGAAGC 198
> AT1G64540.1 | Symbols: | F-box/FBD-like domains containing protein
| chr1:23966909-23968425 FORWARD LENGTH=1335
Length=1335
Score = 150 bits (81), Expect = 4e-36
Identities = 115/131 (88%), Gaps = 4/131 (3%)
Strand=Plus/Plus
Query 14 CTAGAGA-TTCGATCAGCAATTTGCCAGATGAGATACTTGGCAAAATCTTGTCTTTGCTT 72
||||||| ||| ||||||||| ||||||||||||| |||||||||||| ||||||| |||
Sbjct 8 CTAGAGAGTTC-ATCAGCAATCTGCCAGATGAGATTCTTGGCAAAATCCTGTCTTTACTT 66
Query 73 CCGACAAAA-GTGGCTGCTTCGACATCTGTTCTGTCCAAGAGGTGGAGGAATCTGCTGGG 131
||||||||| ||| || ||| ||||||||||||||||||||||||||||||||| |
Sbjct 67 CCGACAAAACTTGG-TGTTTCCACATCTGTTCTGTCCAAGAGGTGGAGGAATCTGATCCT 125
Query 132 TCTTGTAGACA 142
||| |||||||
Sbjct 126 TCTCGTAGACA 136
> AT5G35995.1 | Symbols: | F-box/RNI-like superfamily protein
| chr5:14136590-14138514 REVERSE LENGTH=1536
Length=1536
Score = 119 bits (64), Expect = 1e-26
Identities = 112/134 (84%), Gaps = 7/134 (5%)
Strand=Plus/Plus
Query 14 CTAGAGA-TTCGATCAGCAATTTGCCAGATGAGATACTTGGC---AAAATCTTGTCTTTG 69
||||||| ||| ||||||| |||||| |||||| | |||||| |||||||| |||||
Sbjct 59 CTAGAGATTTC-ATCAGCAGTTTGCCTGATGAGGTTCTTGGCAAAAAAATCTTATCTTTA 117
Query 70 CTTCCGACAAAAGTGGCTGCT-TCGACATCTGTTCTGTCCAAGAGGTGGAGGAATCTGCT 128
|||||||||||| | | || | || ||||||||||||||||||||||||||||||||| |
Sbjct 118 CTTCCGACAAAACTCGTTG-TATCCACATCTGTTCTGTCCAAGAGGTGGAGGAATCTGTT 176
Query 129 GGGTCTTGTAGACA 142
| |||||||||
Sbjct 177 CCATTTTGTAGACA 190
> AT4G27050.1 | Symbols: | F-box/RNI-like superfamily protein
| chr4:13575800-13578051 REVERSE LENGTH=1899
Length=1899
Score = 113 bits (61), Expect = 5e-25
Identities = 127/158 (80%), Gaps = 8/158 (5%)
Strand=Plus/Plus
Query 24 GATCAGCAATTTGCCAGATGA-GATACTTGGCAAAATCTTGTCTTT-GCTTCCGACAAAA 81
|||||||||| | || ||||| | | |||||||||||| ||||||| | ||||||| |||
Sbjct 468 GATCAGCAATCTCCCCGATGATG-TTCTTGGCAAAATCCTGTCTTTAG-TTCCGAC-AAA 524
Query 82 G-TGGCTGCTTCGACATCTGTTCTGTCCAAGAGGTGGAGGAATCTGCTGG-GTCTTGTAG 139
| | |||||| | || || ||||||||||||||||||||||||||||| | |||||||
Sbjct 525 GCTTGCTGCTGCAACGTCGGTTCTGTCCAAGAGGTGGAGGAATCTGCTTCCG-CTTGTAG 583
Query 140 ACACCCTTTCCTTTGATGAGTCGATGGTTGTGTATCCC 177
| | |||| ||||| || ||||| || | ||||||
Sbjct 584 ATAGCCTTGATTTTGACGAAACGATGCTTTTCTATCCC 621
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 8450626968
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5