BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473931
Length=1775
Score E
Sequences producing significant alignments: (Bits) Value
AT5G26710.1 | Symbols: | Glutamyl/glutaminyl-tRNA synthetase, ... 2708 0.0
AT1G47930.1 | Symbols: | pseudogene, glutamyl-tRNA synthetase,... 621 7e-177
> AT5G26710.1 | Symbols: | Glutamyl/glutaminyl-tRNA synthetase,
class Ic | chr5:9305513-9308440 FORWARD LENGTH=2513
Length=2513
Score = 2708 bits (1466), Expect = 0.0
Identities = 1676/1779 (94%), Gaps = 8/1779 (0%)
Strand=Plus/Plus
Query 1 GGAACTGGCCAAAGATGGGAAAGTTTGAGGAAATCGAAAAAGTATCAGAGT-TTGGTTAG 59
|||||||| |||||||||||||||||||||||||| ||||||||||||||| || |||||
Sbjct 554 GGAACTGGTCAAAGATGGGAAAGTTTGAGGAAATCTAAAAAGTATCAGAGTCTT-GTTAG 612
Query 60 ATGGTTCAATTCGATATTAGACGAGTACAGCGAGCTGCTTAACAAGGTTCTATCAACATA 119
|||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||| ||
Sbjct 613 ATGGTTCAATTCGATATTAGACGAGTACAGTGAGGTGCTTAACAAGGTTCTAGCAACTTA 672
Query 120 TGTGAAGAAAGGCTCAGGGAAGCCTGTGGCTCCACCCAAGTCTAAAGACAACCAACAAGC 179
||| |||||||| |||||||||||||| ||| |||| ||||||||||| | |||||||||
Sbjct 673 TGTTAAGAAAGGATCAGGGAAGCCTGTTGCTGCACCTAAGTCTAAAGATAGCCAACAAGC 732
Query 180 TACGAAAGCAGATGCACAGGATAAAGGCAAATCTGAAGTGGACTTGCCGGAAGCAGAAAT 239
| ||||| ||||| ||||||||||| || |||||||||||||||||||||| || ||
Sbjct 733 TGTGAAAGGAGATGGTCAGGATAAAGGTAAGCCTGAAGTGGACTTGCCGGAAGCGGAGAT 792
Query 240 TGGAAAGGTTCGACTTCGGTTTGCTCCAGAGCCAAGTGGTTATCTTCACATTGGACATGC 299
|||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 793 TGGAAAGGTTAAACTCCGGTTTGCTCCAGAGCCAAGTGGTTATCTTCACATAGGACATGC 852
Query 300 CAAGGCTGCGTTACTGAACAAGTATTTTGCTGAGCGTTACCAAGGGGAAGTGATTGTGCG 359
||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 853 TAAGGCTGCGTTGCTGAACAAGTATTTCGCTGAGCGTTACCAAGGGGAAGTGATTGTGCG 912
Query 360 TTTTGATGATACTAACCCTGCTAAAGAAAGCAATGAGTTTGTGGATAATCTCGTTAAAGA 419
||||||||||||||||||||||||||||||||||||||||||||||||||| || || ||
Sbjct 913 TTTTGATGATACTAACCCTGCTAAAGAAAGCAATGAGTTTGTGGATAATCTTGTGAAGGA 972
Query 420 TATTGGGACTTTGGGGATCAAGTATGAGAAAGTGACATACACTTCAGACTACTTTCCTGA 479
||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 973 TATTGGGACCTTGGGGATCAAGTATGAGAAAGTGACATACACTTCGGACTATTTTCCTGA 1032
Query 480 ACTGATGCAAATGGCGGAAAAACTGATGCGTGAGGGCAAGGCATATGTTGACGACACTCC 539
| ||||| | |||||||||||||||||||||||||| |||||||||||||| ||||| ||
Sbjct 1033 ATTGATGGATATGGCGGAAAAACTGATGCGTGAGGGTAAGGCATATGTTGATGACACACC 1092
Query 540 AAGGGAGCAGATGCAGAAAGAGAGGATGGATGGGATTGATTCAAAATGTAGGAATCATAG 599
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1093 GAGGGAGCAGATGCAGAAAGAGAGGATGGATGGGATTGATTCGAAATGTAGGAATCATAG 1152
Query 600 TGTCGATGAGAATTTGAAGCTATGGCAGGAAATGATTGCGGGAAGTGAGAGAGGATTACA 659
||||| |||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 1153 CGTCGAGGAGAATTTGAAGCTATGGAAGGAAATGATTGCAGGAAGTGAGAGAGGATTACA 1212
Query 660 GTGCTGTGTTCGCGGGAAATTCAACATGCAAGATCCCAACAAAGCCATGCGCGACCCTGT 719
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 1213 GTGCTGTGTTCGTGGGAAATTCAACATGCAAGATCCCAACAAAGCCATGCGTGACCCGGT 1272
Query 720 TTATTATCGATGTAATCCTATGTCTCACCACCGTATCGGAGATAAGTATAAGATATATCC 779
|||||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1273 TTATTACCGATGCAATCCTATGTCTCACCACCGTATCGGGGATAAGTATAAGATATATCC 1332
Query 780 AACATATGACTCTGCTTGCCCGTTTGTTGATTCCCTTGAAGGTATAACGCATGCCCTTCG 839
||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1333 AACATATGACTTTGCTTGCCCGTTTGTTGATTCCCTTGAAGGTATAACGCATGCTCTTCG 1392
Query 840 GTCTAGTGAGTATCATGACCGGAATGCTCAATACTTTAAAGTTCTGGAGGACATGGGAAT 899
||||||||||||||||||||| |||||||| |||||||||||||||||||| |||||| |
Sbjct 1393 GTCTAGTGAGTATCATGACCGAAATGCTCAGTACTTTAAAGTTCTGGAGGATATGGGACT 1452
Query 900 GCGACAGGTTCAGCTTTATGAATTCAGCCGGTTAAATCTGGTTTTTACACTTCTCAGTAA 959
|||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||
Sbjct 1453 GCGACAGGTTCAGCTTTACGAATTCAGCCGGTTAAACCTAGTTTTTACACTTCTCAGTAA 1512
Query 960 ACGCAAGCTTCTCTGGTTTGTCCAGACTGGATTGGTTGACGGGTGGGATGATCCACGCTT 1019
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 1513 GCGCAAGCTTCTCTGGTTTGTCCAAACTGGATTGGTTGACGGGTGGGATGATCCACGTTT 1572
Query 1020 CCCGACAGTCCAAGGAATTGTTCGTAGAGGTTTGAAAATCGAGGCTCTTATTCAGTTCAT 1079
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 1573 CCCGACAGTCCAAGGAATTGTTCGTAGAGGTTTGAAAATCGAGGCTCTGATTCAATTCAT 1632
Query 1080 TCTCGAGCAGGGAGCTTCGAAGAATCTAAATTTGATGGAATGGGACAAACTTTGGTCTAT 1139
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1633 TCTCGAGCAGGGGGCTTCGAAGAATCTAAATTTGATGGAATGGGACAAACTTTGGTCTAT 1692
Query 1140 TAATAAGAGAATAATTGATCCTGTGTGCCCTAGACACACGGCTGTGATTGCAGAGCGTCG 1199
|||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||
Sbjct 1693 AAATAAGAGAATAATTGATCCTGTGTGCCCTAGACACACTGCTGTGGTTGCAGAACGTCG 1752
Query 1200 TGTACTATTTACCTTAACAGATGGTCCTGATGAGCCGTTTGTTCGCCTGATACCAAAGCA 1259
|||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 1753 TGTACTATTTACCTTAACGGATGGTCCTGATGAGCCGTTTGTTCGCATGATACCAAAGCA 1812
Query 1260 CAAGAAATTCGAAGGTGCTGGAGAAAAAGCGACCACTTTCACCAAGAGCATTTGGATCGA 1319
||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||
Sbjct 1813 CAAGAAATTCGAAGGTGCTGGAGAAAAGGCGACCACTTTCACTAAGAGCATTTGGCTCGA 1872
Query 1320 GGAAGCTGATGCGAGTGCCATATCCGTTGATGAGGAAGTAACTTTGATGGATTGGGGAAA 1379
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1873 GGAAGCTGATGCGAGTGCCATATCCGTTGGTGAGGAAGTAACTTTGATGGATTGGGGAAA 1932
Query 1380 TGCCATAGTAAAGGAAATCACAAAGGACGAGGAGGGTCGTGTCACTGCGTTATCTGGCAT 1439
||| || ||||||||||||||||||||||||||||||||||||||||| |||||||| |
Sbjct 1933 TGCTATCGTAAAGGAAATCACAAAGGACGAGGAGGGTCGTGTCACTGCCTTATCTGG--T 1990
Query 1440 -TC-TGAATCTCCAAGGATCTGTAAAGACTACAAAGCTGAAGCTCACATGGCTTCCTGAC 1497
|| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1991 GTCTTGAATCTCCAAGGTTCTGTAAAGACTACAAAGCTGAAGCTGACATGGCTTCCTGAT 2050
Query 1498 ACCAATGAATTGGTCAATCTCACATTAACTGAGTTTGATTATTTAATCACCAAGAAGAAG 1557
|| |||||||||||||||||||||||||| |||||||||||| |||||||||||||||||
Sbjct 2051 ACTAATGAATTGGTCAATCTCACATTAACAGAGTTTGATTATCTAATCACCAAGAAGAAG 2110
Query 1558 CTGGAAGATGATGATGAAGTTGCTGATTTTGTGAATCCTAACACAAAGAAGGAAACATTG 1617
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2111 CTGGAAGATGATGATGAAGTTGCTGATTTTGTGAATCCTAACACAAAGAAGGAAACATTG 2170
Query 1618 GCACTTGGTGATTCGAATATGCGGAATCTGAAATGTGGAGATGTGATTCAGCTTGAGAGG 1677
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2171 GCACTTGGTGATTCGAATATGAGGAATCTGAAATGTGGAGATGTGATTCAGCTTGAGAGG 2230
Query 1678 AAAGGCTATTTCAGATGTGATGTTCCTTTTGTCAAATCTTCAAAGTCCATTGTTTTATTC 1737
||||||||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||
Sbjct 2231 AAAGGCTATTTCAGATGTGATGTGCCTTTTGTCAAATCTTCAAAGCCCATTGTCTTATTC 2290
Query 1738 TCTATTCCAGATGGAAGAGCT-CTTAAGTGATGAATGAA 1775
|| ||||||||||||||||| || ||||||| ||||||
Sbjct 2291 TCCATTCCAGATGGAAGAGCCGCT-AAGTGATCAATGAA 2328
> AT1G47930.1 | Symbols: | pseudogene, glutamyl-tRNA synthetase,
similar to GI:3435196 from (Arabidopsis thaliana); blastp
match of 68% identity and 4.0e-65 P-value to GP|6815089|dbj|BAA90375.1||AP001081
unnamed protein product {Oryza sativa
(japonica cultivar-group)} | chr1:17662900-17663940 FORWARD
LENGTH=1041
Length=1041
Score = 621 bits (336), Expect = 7e-177
Identities = 457/510 (90%), Gaps = 29/510 (6%)
Strand=Plus/Plus
Query 1 GGAACTGGCCAAAGATGGGAAAGTTTGAGGAAATCGAAAAAGTATCAGAGTTTGGTTAGA 60
|||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 553 GGAACTGGCCAAAGATGGGAAAGTTTGAGGAAATCGAAAAAGGATTAGAGTTTGGTTAGA 612
Query 61 TGGTTCAATTCGATATTAGACGAGTACAGCGAGCTGCTTAACAAGGTTCTATCAACATAT 120
||||| | ||||| ||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 613 TGGTTTAGTTCGACATTAGACGAGTACAGCGAGCTGCTTAACAAGGTTCTAGCAACATAT 672
Query 121 GTGAAGAAAGGCTCAGGGAAGCCTGTGGCTCCACCCAAGTCTAAAGACAACCAACAAGCT 180
||||||||| |||||||||||||||| |||||| | |||||||||| ||||||||||
Sbjct 673 GTGAAGAAAAGCTCAGGGAAGCCTGTCGCTCCA---A--TCTAAAGACAGCCAACAAGCT 727
Query 181 ACGAAAGCAGATGCACAGGATAAAGGCAAATCTGAAGTGGACTTGCCGGAAGCAGAAATT 240
|| ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||
Sbjct 728 ACTAAAGCAGATGCACAGGATAAAGGCAAACCTGAAGTGGAGTTGCCGGAAGCAGAAATT 787
Query 241 GGAAAGGTTCGACTTCGGTTTGCTCCAGAGCCAAGTGGTTATCTTCACATTGGACATGCC 300
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 788 GGAAAGGTTCGACTTCGGTTTGCTCCAGAGCCAAGTGGTTACCTTCACATTGGACATGCC 847
Query 301 AAGGCTGCGTTACTGAACAAGTATTTTGCTGAGCGTTACCAAGGGGAAGTGATTGTGCGT 360
||||||||||| || |||||||||||||||||||||| |||| |
Sbjct 848 AAGGCTGCGTTGCTAAACAAGTATTTTGCTGAGCGTTT-----------TGAT-G----- 890
Query 361 TTTGATGATACTAACCCTGCTAAAGAAAGCAATGAGTTTGTGGATAATCTCGTTAAAGAT 420
|| | ||||||||||||||||||||||||| ||| |||||||| | || ||||||
Sbjct 891 ----AT-A--CTAACCCTGCTAAAGAAAGCAATGAATTTATGGATAATATGGTGAAAGAT 943
Query 421 ATTGGGACTTTGGGGATCAAGTATGAGAAAGTGACATACACTTCAGACTACTTTCCTGAA 480
|||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||
Sbjct 944 ATTGGGACCTTGGGGATCAAGTATGAGAAAATGACATGCACTTCAGACTACTTTCCTGAA 1003
Query 481 CTGATGCAAATGGCGGAAAAACTGATGCGT 510
||||||||||||||||||||||||||||||
Sbjct 1004 CTGATGCAAATGGCGGAAAAACTGATGCGT 1033
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 87800753205
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5