BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473935
Length=747
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48000.1 | Symbols: MYB112, AtMYB112 | myb domain protein 11... 1131 0.0
> AT1G48000.1 | Symbols: MYB112, AtMYB112 | myb domain protein
112 | chr1:17704179-17706460 REVERSE LENGTH=905
Length=905
Score = 1131 bits (612), Expect = 0.0
Identities = 708/754 (94%), Gaps = 8/754 (1%)
Strand=Plus/Plus
Query 1 AGTTTATGAGAATATCAAAGCGTGAATATAAGTAGAACAGAATTCGCAAACTGTAAAACC 60
||||| | ||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 63 AGTTTCTAAGAATCTCAAAGCATGAATATAAGTAGAACAGAATTCGCAAACTGTAAAACC 122
Query 61 CTTATTAAGCATAAAGAAGAAGTGGAAGAAGTCGAGAAGAAGATGGAAATAGAAATAAGG 120
||||| || |||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 123 CTTATAAATCATAAAGAAGAAGTCGAAGAAGTCGAGAAAAAGATGGAAATAGAAATAAGG 182
Query 121 AGAGGTCCATGGACTGTGGAAGAAGACATGAAGCTCGTCAGTTACATTTCTCTTCACGGT 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 183 AGAGGTCCATGGACTGTGGAAGAAGACATGAAGCTCGTCAGTTACATTTCTCTTCACGGT 242
Query 181 GAAGGAAGATGGAACTCCCTCTCTCGTTCTGCTGGACTAAATAGGACGGGGAAAAGTTGC 240
|||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct 243 GAAGGAAGATGGAACTCCCTCTCTCGTTCTGCTGGACTGAATAGAACGGGGAAAAGTTGC 302
Query 241 AGATTGCGGTGGCTGAATTATCTCCGGCCGGATATCCGCCGTGGAGACATATCCCTCCAA 300
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 303 AGATTGCGGTGGCTAAATTATCTCCGGCCGGATATCCGCCGTGGAGACATATCCCTTCAA 362
Query 301 GAACAATTTATCATTCTTGAACTCCATTCTCGTTGGGGAAATCGGTGGTCAAAGATTGCT 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 363 GAACAATTTATCATCCTTGAACTCCATTCTCGTTGGGGAAATCGGTGGTCAAAGATTGCT 422
Query 361 CAACATTTACCAGGAAGAACAGATAACGAGATAAAGAATTATTGGAGAACACGTGTCCAA 420
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 423 CAACATTTACCGGGAAGAACAGATAACGAGATAAAGAATTATTGGAGAACACGTGTTCAA 482
Query 421 AAGCATGCACAACTTCTAAAATGTGACGTGAATAGCAAGCAATTCAAAGACACCATCAAA 480
||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 483 AAGCATGCAAAACTTCTAAAATGTGACGTGAACAGCAAGCAATTCAAAGACACCATCAAA 542
Query 481 CATCTCTGGATGCCTCGTCTCGTCGAGAGAATCGCCTCCACTCAAAATGTCGAATTTACC 540
||||||||||||||||||||| |||||||||||||| ||||||||| |||| ||||||||
Sbjct 543 CATCTCTGGATGCCTCGTCTCATCGAGAGAATCGCCGCCACTCAAAGTGTCCAATTTACC 602
Query 541 CCTAACCACTACTCGCCTGAGAACTCGAGCGTCGCCACTGCCACGTCATCTACGTCGTCG 600
||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||||||
Sbjct 603 TCTAACCACTACTCGCCTGAGAACTCCAGCGTCGCCACCGCCACGTCATCAACGTCGTCG 662
Query 601 TCTGAGTCCATG-GCATCGAGTTTCTACGGTGATGATCAGGTGGAATATGGAACGTTGGA 659
|||||| | || | ||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 663 TCTGAGGCTGTGAG-ATCGAGTTTCTACGGTGGTGATCAGGTGGAATTTGGAACGTTGGA 721
Query 660 TCC---GA-A--TGGTGGTGACTGGTTCAACGGCGGAGATGCGTTTGAAACTTTGTGGAG 713
|| || | ||||||| | |||||||||||||||||| |||||||||||||||| ||
Sbjct 722 TCATATGACAAATGGTGGTTATTGGTTCAACGGCGGAGATACGTTTGAAACTTTGTGTAG 781
Query 714 TTCTGAGGAGCTCAACAAGTGGCTCTTACAGTAG 747
|| ||| |||||||||||||||||| ||||||||
Sbjct 782 TTTTGACGAGCTCAACAAGTGGCTCATACAGTAG 815
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36269054134
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5