BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg473936

Length=387
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G48010.1 | Symbols:  | Plant invertase/pectin methylesterase...   512    9e-145


> AT1G48010.1 | Symbols:  | Plant invertase/pectin methylesterase 
inhibitor superfamily protein | chr1:17711491-17712660 REVERSE 
LENGTH=537
Length=537

 Score =  512 bits (277),  Expect = 9e-145
 Identities = 355/392 (91%), Gaps = 7/392 (2%)
 Strand=Plus/Plus

Query  1    GATCCTAAAATT-GAAAAGCTTGATCTTTCTGACACTGCCAAATATTTGATACATCATGC  59
            |||||||||||| ||||| ||||||||| ||| |  |||||||| |||||| ||| ||||
Sbjct  148  GATCCTAAAATTGGAAAA-CTTGATCTTCCTGGCGTTGCCAAATGTTTGATTCATTATGC  206

Query  60   GCAACAAAATGCCTTAGACACACATAATCAGTTACAATTACTTGCTAATAGCACGACCGA  119
             ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct  207  TCAACAAAATGCCTTAGATACACATAATCAGTTACAATTACTTGCTAATAGCACGACTGA  266

Query  120  TAAACGTACTAAAGAATGTTACATCTCATGCTCAAAGTACTACGACAAAGCTCTTTACTC  179
            ||| ||||| ||||||| ||||||||||||||||||||| |||||||| |||||||||||
Sbjct  267  TAACCGTACCAAAGAATCTTACATCTCATGCTCAAAGTATTACGACAAGGCTCTTTACTC  326

Query  180  TTTTGGTGAGGCCCTAAAGGATATAGAGGTCCATAATCCTGATTATTTAAACGTTGAGAT  239
            ||||| |||||||||||| ||| || ||||| |||||||||||||||||||  |||||||
Sbjct  327  TTTTGATGAGGCCCTAAAAGATTTAAAGGTCAATAATCCTGATTATTTAAATATTGAGAT  386

Query  240  CT-CAGCTGCTCGGCAAAATGCAAATGATTGCAAAACTTTAGATCTGAAAGATGT-T--A  295
             | ||||||||||||||||||||||||||||||||||||| |||||||||||||| |  |
Sbjct  387  -TACAGCTGCTCGGCAAAATGCAAATGATTGCAAAACTTTGGATCTGAAAGATGTCTTCA  445

Query  296  AACCTGATCCAAAACTCATGATGAAGATAGATTTTCTTGAGAATGTATGTGGAATTGTCT  355
            ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
Sbjct  446  AACCTGATCCAAAACTCATTATGAAGATAGATTTTCTTGAGAATGTATGTGGAATTCTTT  505

Query  356  TGTCAATTTCTGACATATTACCAAAGAATTAG  387
            | || |||||||| |||||||||||| |||||
Sbjct  506  TATCCATTTCTGATATATTACCAAAGTATTAG  537



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18247192887


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5