BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473938
Length=1709
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48030.1 | Symbols: mtLPD1 | mitochondrial lipoamide dehydro... 2603 0.0
AT3G17240.1 | Symbols: mtLPD2 | lipoamide dehydrogenase 2 | chr... 1555 0.0
> AT1G48030.1 | Symbols: mtLPD1 | mitochondrial lipoamide dehydrogenase
1 | chr1:17717139-17719141 REVERSE LENGTH=1717
Length=1717
Score = 2603 bits (1409), Expect = 0.0
Identities = 1615/1715 (94%), Gaps = 12/1715 (1%)
Strand=Plus/Plus
Query 1 ATGGCGATGGCGAGCTTAGCTAGGAGGAAGGCGTACTTTCTCACCAGAAACTTATCCAAC 60
|||||||||||||| |||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 1 ATGGCGATGGCGAGTTTAGCTAGGAGGAAGGCGTATTTTCTCACCAGAAACTTATCAAAC 60
Query 61 TCTCCCACTGACGCTCTCAGATTCTCCTTCTCCCTCTCCCGTGGCTTCGCCTCATCAGGA 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 61 TCTCCCACTGACGCTCTCAGATTCTCCTTTTCCCTCTCCCGTGGCTTCGCCTCATCAGGA 120
Query 121 TCTGATGAAAACGACGTCGTCATCATCGGCGGCGGTCCCGGTGGTTACGTAGCCGCGATC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TCTGATGAAAACGACGTCGTCATCATCGGCGGCGGTCCCGGTGGTTACGTAGCCGCGATC 180
Query 181 AAAGCGGCTCAGCTTGGTCTCAAAACCACCTGTATCGAGAAACGCGGCGCTCTCGGTGGT 240
||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 181 AAAGCCTCTCAGCTTGGTCTCAAAACCACTTGTATCGAGAAACGCGGCGCTCTCGGTGGT 240
Query 241 ACTTGTCTTAACGTCGGGTGCATTCCTTCGAAGGCTCTTCTTCACTCTTCACATATGTAC 300
|||||||| |||||||| ||||||||||| |||||||| |||||||||||||||||||||
Sbjct 241 ACTTGTCTCAACGTCGGTTGCATTCCTTCCAAGGCTCTGCTTCACTCTTCACATATGTAC 300
Query 301 CATGAGGCGAAACATGCGTTCGCCAACCATGGTATTAAGGTCTCTTCGGTTGAGGTGGAT 360
||||||||||| ||| | ||||| ||||||||||||||||||||||| |||||||| |||
Sbjct 301 CATGAGGCGAAGCATTCCTTCGCTAACCATGGTATTAAGGTCTCTTCTGTTGAGGTAGAT 360
Query 361 CTTCCTGCTATGTTAGCTCAGAAAGATAATGCGGTTAAGAACCTTACTCGTGGTATCGAA 420
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 361 CTTCCTGCTATGTTGGCTCAGAAAGATAATGCGGTTAAGAACCTCACTCGTGGTATTGAG 420
Query 421 GGTTTGTTCAAGAAGAATAAGGTGACTTATGTTAAGGGATATGGTAAGTTTATTTCACCA 480
|||||||||||||| ||||||||||||||||| || |||||||||||||||||||| |||
Sbjct 421 GGTTTGTTCAAGAAAAATAAGGTGACTTATGTCAAAGGATATGGTAAGTTTATTTCCCCA 480
Query 481 AATGAAGTCTCGGTGGAGACGATCGATGGAGGGAACACCGTTGTGAAAGGTAAACACATC 540
|||||||||||||||||||| || |||||||| ||||| |||||||||||||||| |||
Sbjct 481 AATGAAGTCTCGGTGGAGACTATTGATGGAGGAAACACTATTGTGAAAGGTAAACATATC 540
Query 541 ATTGTTGCTACTGGCTCGGATGTTAAGTCTTTGCCTGGTATTACGATTGATGAAAAGAAG 600
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 541 ATTGTTGCTACTGGCTCGGATGTTAAGTCCTTGCCTGGTATTACGATTGATGAAAAGAAG 600
Query 601 ATTGTTTCGTCGACTGGAGCGTTGTCTCTGTCGGAAGTCCCGAAGAAATTGATTGTGATT 660
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 601 ATTGTTTCGTCGACTGGAGCGTTGTCTCTATCGGAAGTTCCGAAGAAATTGATTGTTATT 660
Query 661 GGTGCGGGGTATATTGGGCTTGAGATGGGTTCTGTTTGGGGTAGGCTTGGGGCAGAGGTT 720
|||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 661 GGTGCGGGGTATATTGGGCTTGAGATGGGTTCTGTTTGGGGTAGGCTTGGATCTGAGGTT 720
Query 721 ACGGTAGTTGAGTTTGCTGGGGATATCGTTCCTTCGATGGATGGTGAAATCCGTAAGCAG 780
||||| |||||||||||||| ||||| ||||||||||||||||||||||| |||||||||
Sbjct 721 ACGGTTGTTGAGTTTGCTGGAGATATTGTTCCTTCGATGGATGGTGAAATTCGTAAGCAG 780
Query 781 TTTCAACGTTCACTTGAGAAGCAAAAGATGAAGTTCATGCTCAAGACTAAAGTTGTATCT 840
||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 781 TTTCAACGTTCTCTTGAGAAGCAGAAGATGAAGTTCATGCTCAAGACTAAAGTTGTTTCT 840
Query 841 GTGGATTCCTCCTCTGACGGTGTGAAGCTTACAGTGGAACCGGCAGAAGGAGGAGAGCAG 900
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 GTGGATTCCTCCTCTGATGGTGTGAAGCTTACAGTGGAACCGGCAGAAGGAGGAGAGCAG 900
Query 901 ACTATTCTGGAAGCCGATGTTGTGCTTGTCTCAGCAGGAAGAACACCGTTCACATCTGGA 960
||||||||||||| ||||| || ||||||||||| ||||||||||||||||| ||||||
Sbjct 901 TCTATTCTGGAAGCTGATGTGGTACTTGTCTCAGCGGGAAGAACACCGTTCACTTCTGGA 960
Query 961 CTTGATCTGGAGAAAATCGGAGTAGAAACTGACAAAGCTGGGAGGATTCTGGTGAATGAG 1020
||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||
Sbjct 961 CTTGATCTGGAGAAAATCGGAGTGGAAACTGACAAAGCCGGGAGGATTCTGGTGAATGAT 1020
Query 1021 AGATTCTTGAGCAATGTCCCAGGCGTGTATGCTATTGGAGATGTGATTCCAGGACCAATG 1080
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 AGATTCTTGAGTAATGTCCCAGGCGTGTATGCTATTGGAGATGTGATTCCAGGACCAATG 1080
Query 1081 CTTGCTCACAAAGCCGAAGAAGATGGTGTTGCTTGTGTGGAGTTCATAGCAGGCAAACAC 1140
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1081 CTTGCTCACAAAGCCGAAGAAGACGGTGTTGCTTGTGTGGAGTTCATAGCAGGCAAACAC 1140
Query 1141 GGCCATGTGGATTATGACAAGGTTCCTGGTGTTGTCTACACGCATCCTGAGGTTGCTTCG 1200
|| ||||| |||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1141 GGTCATGTTGATTATGACAAGGTTCCTGGTGTTGTTTACACTCATCCTGAGGTTGCTTCG 1200
Query 1201 GTTGGTAAAACCGAAGAACAGCTGAAGAAAGAAGGTGTGAGTTACCGGGCTGGAAAATTC 1260
||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 1201 GTTGGTAAAACCGAAGAACAGCTGAAGAAAGAAGGTGTGAGTTACCGGGTTGGGAAATTC 1260
Query 1261 CCATTTATGGCAAATAGCAGAGCGAAGGCCATTGATAATGCAGAAGGATTGGTTAAGATT 1320
|| |||||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1261 CCGTTTATGGCGAATAGCAGAGCTAAGGCTATTGATAATGCAGAAGGATTGGTTAAGATT 1320
Query 1321 CTGGCTGATAAGGAGACCGATAAGATCTTGGGCGTTCACATTATGTCTCCAAACGCTGGA 1380
||||| ||||||||||| ||||||||||||||||||||||||||| | ||||||||||||
Sbjct 1321 CTGGCCGATAAGGAGACTGATAAGATCTTGGGCGTTCACATTATGGCGCCAAACGCTGGA 1380
Query 1381 GAGCTGATTCATGAGGCGGTTCTTGCGATTAACTACGATGCATCAAGTGAAGACATTGCT 1440
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1381 GAGCTGATTCATGAGGCTGTTCTTGCGATTAACTACGATGCATCAAGTGAAGACATTGCT 1440
Query 1441 CGAGTCTGTCACGCTCATCCCACTATGAGCGAGGCTCTGAAGGAAGCCGCCATGGCCACA 1500
|||||||| || |||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1441 CGAGTCTGCCATGCTCATCCCACTATGAGCGAGGCTCTTAAGGAAGCTGCCATGGCCACC 1500
Query 1501 TATGACAAGCCCATTCACATCTAAA-GGGAA---G-AAGACCTTAAAGGAGAGAGCCACC 1555
||||||||||| ||||||||||||| ||||| | ||||||||||||||| ||||||||
Sbjct 1501 TATGACAAGCCTATTCACATCTAAAAGGGAACAAGGAAGACCTTAAAGGAGTGAGCCACC 1560
Query 1556 TACGACAAGCCAAATCGATATCTTAAACGGGTTGGATTTTGGTTTGGTTTTCTGTGGTTT 1615
|| ||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||
Sbjct 1561 TATGACAAGCCAAATCGATATCTTAACCTGGTTGGATTTTGGTTCGGTTTTCTGTGGTTT 1620
Query 1616 AGCCTTCAATTTGTCCTTTATTACTAGTAGTGTTC-TTCAT-A-TGTTCAGATTCGTGTT 1672
||||||||||||||||||||| ||| || || || ||| | | ||||||||| ||||||
Sbjct 1621 AGCCTTCAATTTGTCCTTTAT-ACT-GT-GTTTTTATTCGTTAATGTTCAGATACGTGTT 1677
Query 1673 AAGCCTGATCCTTAATAAA-TATTCAACATTCACT 1706
|||||||||| |||||||| |||||||||||||||
Sbjct 1678 AAGCCTGATCTTTAATAAAATATTCAACATTCACT 1712
> AT3G17240.1 | Symbols: mtLPD2 | lipoamide dehydrogenase 2 | chr3:5889872-5892252
REVERSE LENGTH=1919
Length=1919
Score = 1555 bits (842), Expect = 0.0
Identities = 1312/1540 (85%), Gaps = 27/1540 (2%)
Strand=Plus/Plus
Query 1 ATGGCGATGGCGAGCTTAGCTAGGAGGAAGGCGTACTTTCTCACCAGAAACTTATCCAAC 60
|||||||||||||||||||||||||| || ||||||||||||||||||||| | || ||
Sbjct 87 ATGGCGATGGCGAGCTTAGCTAGGAGAAAAGCGTACTTTCTCACCAGAAACATCTCTAAT 146
Query 61 TCTCCCACTGACGCTCTCAGATTCTCCTTCTCCCTCTCCCGTGGCTTCGCCTCATCAGGA 120
||||||||||| ||| |||||||||| ||||||||| | || |||||||| || ||||||
Sbjct 147 TCTCCCACTGATGCTTTCAGATTCTCTTTCTCCCTCACTCGCGGCTTCGCTTCGTCAGGA 206
Query 121 TCTGATGAAAACGACGTCGTCATCATCGGCGGCGGTCCCGGTGGTTACGTAGCCGCGATC 180
|| || || ||||||||||||||||||||||||||||| || ||||| || || |||||
Sbjct 207 TCCGACGACAACGACGTCGTCATCATCGGCGGCGGTCCTGGAGGTTATGTGGCGGCGATT 266
Query 181 AAAGCGGCTCAGCTTGGTCTCAAAACCACCTGTATCGAGAAA-CGCGGCGCTCTCGGTGG 239
|||||||| ||||| ||||| || || ||||||||||| ||| || ||||||||||||||
Sbjct 267 AAAGCGGCACAGCTCGGTCTTAAGACTACCTGTATCGA-AAAGCGAGGCGCTCTCGGTGG 325
Query 240 TACTTGTCTTAACGTCGGGTGCATTCCTTCGAAGGCTCTTCTTCACTCTTCACATATGTA 299
|||||||||||||||||| || |||||||| ||||| |||||||||||||| || |||||
Sbjct 326 TACTTGTCTTAACGTCGGCTGTATTCCTTCAAAGGCCCTTCTTCACTCTTCTCACATGTA 385
Query 300 CCATGAGGCGAAA-CATGCGTTCGCCAACCATGGTATTAAGGTCTCTTCGGTTGAGGTGG 358
|||||| || ||| || | || || ||||||||| |||||||||||||||||||||| |
Sbjct 386 CCATGAAGC-AAAGCACGTTTTTGCTAACCATGGTGTTAAGGTCTCTTCGGTTGAGGTAG 444
Query 359 ATCTTCCTGCTATGTTAGCTCAGAAAGATA-ATGCGGTTAAGAACCTT-ACTCGTGGTA- 415
|||||||||||||||| || |||||||| | | || || ||||| || || ||||| |
Sbjct 445 ATCTTCCTGCTATGTTGGCGCAGAAAGACACA-GCCGTCAAGAA-TTTAACCCGTGG-AG 501
Query 416 TCGAAGGTTTGTTCAAGAAGAATAAGGT-GACTTATGTTAAGGGATATGGTAAGTTTATT 474
|||||||| ||||||||||||| ||||| || ||||||||||| |||||||||||| |
Sbjct 502 TCGAAGGTCTGTTCAAGAAGAACAAGGTAAAC-TATGTTAAGGGCTATGGTAAGTTTCTG 560
Query 475 TCACCAAATGAAGTCTCGGTGGAGACGATCGATGGAGGGAACACCGTTGTGAAAGGTAAA 534
|| ||| |||||||| ||||| || |||||||||| ||| ||||||||||| |||
Sbjct 561 TCCCCATCGGAAGTCTCTGTGGACACAATCGATGGAGAAAACGTGGTTGTGAAAGGCAAA 620
Query 535 CACATCATTGTTGCTACTGGCTCGGATGTTAAGTCTTTGCCTGGTATTACGATTGATGAA 594
|| ||||| ||||| |||||||||||||| |||||||||||||| || || || ||||||
Sbjct 621 CATATCATAGTTGCAACTGGCTCGGATGTCAAGTCTTTGCCTGGAATCACCATCGATGAA 680
Query 595 AAGAAGATTGTTTCGTCGACTGGAGCGTTGTCTCTGTCGGAAG-TCCCGAAGAAATTGAT 653
||||||||||| || || || || || |||||||| | | || |||| |||||| | ||
Sbjct 681 AAGAAGATTGTCTCATCAACCGGGGCACTGTCTCTGACAG-AGATCCCAAAGAAACTCAT 739
Query 654 TGTGATTGGTGCGGGGTATATTGGGCTTGAGATGGGTTCTGTTTGGGGTA-GGCTTGGGG 712
||| |||||||| || ||||||||||| |||||||||||||| ||||| | |||| ||
Sbjct 740 TGTCATTGGTGCTGGCTATATTGGGCTAGAGATGGGTTCTGTATGGGG-ACGGCTAGGAT 798
Query 713 CAGAGGTTACGGTAGTTGAGTTTGCTGGGGATATCGTTCCTTCGATGGATGGTGAAATCC 772
||||||| || || ||||||||||| | ||||||||| || | ||||||||||||||||
Sbjct 799 CAGAGGTCACAGTTGTTGAGTTTGCAGCGGATATCGTACCAGCAATGGATGGTGAAATCC 858
Query 773 GTAAGCAGTTTCAACGTTCACTTGAGAAGCAAAAGATGAAGTTCATGCTCAAGACTAAAG 832
| |||||||||||||| ||||| |||||||| |||||||| || |||||||| |||||||
Sbjct 859 GCAAGCAGTTTCAACGCTCACTAGAGAAGCAGAAGATGAAATTTATGCTCAAAACTAAAG 918
Query 833 TTGTAT-CTGTGGATTCCTCCT-CTGACGGTGTGAAGCTTACAGTGGAACCGGCAGAAGG 890
| || | || ||||| | || || ||||| || || | ||||||||| || |||||
Sbjct 919 TCGT-TGGGGTAGATTCAT-CTGGAGATGGTGTTAAACTCATAGTGGAACCTGCTGAAGG 976
Query 891 AGGAGAGCAGACTATTCTGGAAGCCGATGTTGTGCTTGTCTCAGCAGGAAGAACACCGTT 950
||||| ||||| | ||| ||||| ||||| || || |||||||| || ||||| |||||
Sbjct 977 TGGAGAACAGACCACTCTAGAAGCTGATGTGGTCCTCGTCTCAGCTGGTAGAACTCCGTT 1036
Query 951 CACATCTGGACTTGATCTGGAGAAAATCGGAGTAGAAACTGACAAA-GCTGGGAGGATTC 1009
|||||||||||||||||| |||||||||||||| || || |||||| || ||||| ||||
Sbjct 1037 CACATCTGGACTTGATCTAGAGAAAATCGGAGTTGAGACAGACAAAGGC-GGGAGAATTC 1095
Query 1010 TGGTGAATGAGAGATTCTTGAGC-AATGTCCCAGGCGTGTATGCTATTGGAGATGTGATT 1068
||||||| |||||||||| || | ||||| ||||||| ||||| |||||||||||||||
Sbjct 1096 TGGTGAACGAGAGATTCTCGA-CAAATGTTTCAGGCGTTTATGCAATTGGAGATGTGATT 1154
Query 1069 CCAGGACCAATGCTTGCTCACAAAGCCGAAGAAGATGGTGTTGCTTGTGTGGAGTTCATA 1128
|||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||| |||
Sbjct 1155 CCAGGACCAATGCTGGCTCACAAAGCCGAAGAAGATGGTGTTGCATGTGTTGAGTTTATA 1214
Query 1129 GCAGGCAAACACGGCCATGTGGATTATGACAAGGTTCCTGGTGTTGTCTACACGCATCCT 1188
|||||||||||||| ||||||||||| ||||| || ||||| |||||||||||| | |||
Sbjct 1215 GCAGGCAAACACGGGCATGTGGATTACGACAAAGTCCCTGGGGTTGTCTACACGTACCCT 1274
Query 1189 GAGGTTGCTTCGGTTGGTAAAACCGAAGAACAGCTGAAGAAAGAAGGTGTGAGTTACCGG 1248
|| ||||| ||||||||||||||||| || |||||||||||||||||||| || |||
Sbjct 1275 GAAGTTGCGTCGGTTGGTAAAACCGAGGAGCAGCTGAAGAAAGAAGGTGTAAGCTACAAT 1334
Query 1249 GCTGGAAAATTCCCATTTATGGCAAATAGCAGAGCGAAGGCCATTGATA-ATGCAGAAGG 1307
| ||||||||||||||| ||||| ||||||||||| |||||||| || | | ||||| ||
Sbjct 1335 GTTGGAAAATTCCCATTCATGGCCAATAGCAGAGCCAAGGCCATAGACACA-GCAGAGGG 1393
Query 1308 ATTGGTTAAGATTCTGGCTGATAAGGAGACCGATAAGATCTTGGGCGTTCACATTATGTC 1367
| |||| |||||| |||||||||| ||||| || ||||||||||| ||||||||||||||
Sbjct 1394 AATGGTCAAGATTTTGGCTGATAAAGAGACAGACAAGATCTTGGGAGTTCACATTATGTC 1453
Query 1368 TCCAAACGCTGGAGAGCTGATTCATGAGGCGGTTCTTGCGATTAACTACGATGCATCAAG 1427
|||||||| ||||| |||| |||||||||||||| || || ||||| |||||||||||
Sbjct 1454 ACCAAACGCAGGAGAATTGATCCATGAGGCGGTTCTAGCTATCAACTATGATGCATCAAG 1513
Query 1428 TGAAGACATTGCTCGAGTCTGTCACGCTCATCCCACTATGAGCGAGGCTCTGAAGGAAGC 1487
|||||||||||||||||||||||||||||||||||| ||||| |||||| | ||||||||
Sbjct 1514 TGAAGACATTGCTCGAGTCTGTCACGCTCATCCCACCATGAGTGAGGCTATCAAGGAAGC 1573
Query 1488 CGCCATGGCCACATATGACAAGCCCATTCACATCTA-AAG 1526
|||||||| || |||||||||||||||||||| || |||
Sbjct 1574 TGCCATGGCTACCTATGACAAGCCCATTCACATGTAGAAG 1613
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84487517235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5