BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473940
Length=1627
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48040.1 | Symbols: | Protein phosphatase 2C family protein... 2375 0.0
> AT1G48040.1 | Symbols: | Protein phosphatase 2C family protein
| chr1:17719740-17721841 REVERSE LENGTH=1619
Length=1619
Score = 2375 bits (1286), Expect = 0.0
Identities = 1519/1629 (93%), Gaps = 25/1629 (2%)
Strand=Plus/Plus
Query 1 TCTTCTTTATTCTTTTAGGCGAATTTCAATTGCGTCCAAGCAAAGCACCTCCACGGCTCC 60
||||||||||||||||||||||||||||||||||||||||||||||| |||| || |
Sbjct 9 TCTTCTTTATTCTTTTAGGCGAATTTCAATTGCGTCCAAGCAAAGCA---CCAC--CT-C 62
Query 61 ACCCCCAAATTTTCGTGGATTTATTCTTCGATTTACCTTTCGGTGAAATTCGCAATTGGA 120
||| ||| ||||||||| ||||||| ||||||||||||||||||||| |||
Sbjct 63 TTACCC-------CGTTGATTTATTCGTCGATTTGCCTTTCGGTGAAATTCGCAATCGGA 115
Query 121 TCTGCTCCATTTGATTATAAACAAAGTCATGATTTTGAGTCAAACAATGGTTGCTGAGGC 180
||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||| ||
Sbjct 116 TCTACTCCATTTGATTATTAACCAAGTCATGATTTTGAGTCAAACAATGGTTGCTGAAGC 175
Query 181 TGAGATCAGGGTTCTTGACGTTAAGTGCCATATCTCCGCTGCTAAAGATCAGAAGAATTT 240
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 176 TGAGATCAGGGTTCTTGACGTTAAGTGCCATATCTCCGCTCCTAAAGATCAGAAGAATTT 235
Query 241 TCAGATCGGCGAAGTTCGTGTTTCTGAGTCTGTTCGTGCTGAGATTTCGGGTTCCGCTGA 300
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 236 TCAGATCGACGAAGTTCGTGTTTCTGAGTCTGTCCGTGCTGAGATTTCGGGTTCCGCTGA 295
Query 301 AACGCCTCGATTCGGATCGGGCATGAGCTGTGTAACTACTACCATTGGAGAATCAACCAG 360
||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||
Sbjct 296 AACGCCTCGATTCGGATCGGGCATGAGTTGTGTAACTACTACCATTGGAGAATCCGCCAG 355
Query 361 TGAGTTTATTCCAACTATACGTTCAGGGAGCTTTGCTGACATTCGAAGCCGAGAAACCAT 420
||| ||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 356 TGACTTTATCCCAACTATACGTTCAGGGAGCTTTGCTGACATTCGAAGTCGAGAAACCAT 415
Query 421 GGAGGATGAACACATTTGCATAGATGACTTGTCAGCTCATCTTGGGTCCTTTAACTTCTC 480
||||||||||||||||||||||||||| ||||||||||| ||||| |||| ||||||||
Sbjct 416 GGAGGATGAACACATTTGCATAGATGATTTGTCAGCTCACCTTGGATCCTACAACTTCTC 475
Query 481 GGTACCAAGTGCTTTTTATGGCGTGTTTGATGGACATGGTGGACCTGAGGCAGCAATTTT 540
||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||||||
Sbjct 476 GGTACCAAGTGCTTTTTATGGTGTGTTTGATGGTCATGGTGGGCCTGAGGCAGCAATTTT 535
Query 541 CATGAAGGAAAACTTGACTAGATTGTTTTTTCAAGATGCTGTATTTCCAGAGATGCCCTC 600
||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 536 CATGAAGGAGAACTTGACTAGATTGTTTTTCCAAGATGCTGTGTTTCCAGAGATGCCCTC 595
Query 601 CATTGTGGATGCGTTTTTCTTAGAAGAACTGGAGAATTCTCACCGAAAGGCTTTTGCTTT 660
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 596 CATTGTGGACGCGTTTTTCTTAGAAGAACTGGAGAATTCTCACCGAAAGGCTTTTGCTTT 655
Query 661 GGCTGATCTTGCCATGGCTGATGAAAGCATTGTCAGTGGTTCATGCGGGACAACCGCGTT 720
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 656 GGCTGATCTTGCCATGGCTGATGAAACCATTGTCAGTGGTTCATGCGGGACAACCGCTTT 715
Query 721 GACCGCTCTGATAATTGGACGACATCTTCTGGTTGCTAATGCTGGAGATTGCCGTGCAGT 780
||||||||| ||||| |||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 716 GACCGCTCTCATAATCGGACGACATCTTCTTGTTGCTAATGCTGGAGATTGTCGTGCAGT 775
Query 781 GCTATGCCGGAGAGGAGTGGCTGTTGATATGTCTTTCGATCACAGATCAACATATGAGCC 840
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 776 GCTATGTAGGAGAGGAGTGGCTGTTGATATGTCTTTCGATCACAGATCAACATATGAGCC 835
Query 841 AGAACGAAGGCGGATTGAAGATTTAGGAGGATACTTTGAGGACGGATATCTCAACGGGGT 900
|||| ||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||
Sbjct 836 AGAAAGAAGGCGGATTGAAGATTTAGGAGGATACTTTGAGGATGGATACCTCAACGGAGT 895
Query 901 CCTTGCTGTAACCCGTGCCATTGGGGATTGGGAACTGAAGAATCCTTTCACTGACTCCTC 960
||| ||||| || ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 896 CCTAGCTGTCACGCGTGCCATTGGAGATTGGGAACTGAAGAATCCTTTCACTGACTCCTC 955
Query 961 TTCACCACTGATTTCTGACCCAGAGATTCGACAGATCATTCTAACAGAGGACGACGAGTT 1020
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct 956 TTCACCACTGATTTCAGACCCAGAGATTGGACAGATCATTCTAACAGAGGACGACGAGTT 1015
Query 1021 CTTGATTTTGGCATGTGATGGTATATGGGATGTGTTGTCAAGCCAGAATGCAGTGAGTAA 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1016 CTTGATTTTGGCATGTGATGGTATATGGGATGTGTTGTCAAGCCAGAATGCAGTGAGTAA 1075
Query 1081 TGTAAGGCAAGGTTTAAGGAGGCATGGTGACCCGAGACAATGTGCGATGGAACTTGGAAA 1140
|||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1076 TGTAAGGCAAGGATTGAGGAGGCATGGTGACCCGAGACAATGTGCGATGGAACTAGGAAA 1135
Query 1141 AGAAGCAGCTAGGCTTAACTCATCAGATAATATGACGGTTGTAGTCATCTGCTTCTCCTC 1200
||||||||| |||||| | ||||||||||||||||||||| |||| ||||||||||||||
Sbjct 1136 AGAAGCAGCGAGGCTTCAGTCATCAGATAATATGACGGTTATAGTGATCTGCTTCTCCTC 1195
Query 1201 AGTCCCGTCTTCACCTAAACAACTGCAGAGGAGAAGATTAAGATTCTGTGTTTCCGATGA 1260
||| ||||||||||||||||||| ||| || ||||||||||||||||||||||| || ||
Sbjct 1196 AGTTCCGTCTTCACCTAAACAACCGCAAAGAAGAAGATTAAGATTCTGTGTTTCTGACGA 1255
Query 1261 AGGCCGAGCTCGGTTACAAGCAATGCTTGGAGGCGAGTGAAAGCAGtttttttGGCGGTA 1320
|| |||||||||||||||||||||||||| ||||||||||||||||| |||||||| |||
Sbjct 1256 AGCCCGAGCTCGGTTACAAGCAATGCTTGCAGGCGAGTGAAAGCAGTGTTTTTGGCAGTA 1315
Query 1321 TATACAAACAACAGGGATCGGGTGCTACCGATCAAACGATTATTTCTCTAATTTGAGATT 1380
| |||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 1316 TGTACAAACAACAGGGATCGGGTGTTACCGATCAAACCATTATTTCTCTAATTTGAGATT 1375
Query 1381 CCATTGGATGATGAGATAAAATAAGAGACTTAGAGAGAGTGGTAGAGATTTAAGGTCATG 1440
| ||| ||||| || ||||||||||||| ||||||| || |||||| |||||||| ||
Sbjct 1376 CGATTCGATGA-GA--TAAAATAAGAGACGTAGAGAG--TGATAGAGAGTTAAGGTCTTG 1430
Query 1441 TTTGTAATGTGGTTACTCAGTTTTGATTCATCTGtttttttGGTT-GTTTCagagagaga 1499
|||||||||||||| |||| |||||||| |||||||||||||||| ||||||||||||||
Sbjct 1431 TTTGTAATGTGGTTTCTCATTTTTGATTGATCTGTTTTTTTGGTTTGTTTCAGAGAGAGA 1490
Query 1500 gagctagagagaAAAAGCAGCCTGAAGTTTTGGTAGGATTATTGAAACTGAT-AATGAGG 1558
|||||||||||| ||||||||||||||||||||||||||||||||||| || ||||
Sbjct 1491 ----TAGAGAGAAAAACCAGCCTGAAGTTTTGGTAGGATTATTGAAACTGATTAA-GAGG 1545
Query 1559 ATTTCATTTTTGTTCTCGAGGATTAGTTATGTTGTACCCATTATTGATTGGTTTAAGGAT 1618
|||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||
Sbjct 1546 ATTTCATTTTTGTTCTTGAGGATTAGTGATGTTGTACCCATTATTGATTGTTTTAAGGAA 1605
Query 1619 TTTTAATTT 1627
|||||||||
Sbjct 1606 TTTTAATTT 1614
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80371072545
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5