BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473951
Length=834
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48130.1 | Symbols: ATPER1, PER1 | 1-cysteine peroxiredoxin ... 1088 0.0
> AT1G48130.1 | Symbols: ATPER1, PER1 | 1-cysteine peroxiredoxin
1 | chr1:17780502-17781727 FORWARD LENGTH=986
Length=986
Score = 1088 bits (589), Expect = 0.0
Identities = 730/795 (92%), Gaps = 22/795 (3%)
Strand=Plus/Plus
Query 56 AAAGATAAGATGCCAGGGATCACACTAGGAGACACGGTACCGAACCTAGAAGTGGAGACG 115
|||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 100 AAAGGTAAAATGCCAGGGATCACACTAGGAGACACGGTGCCGAACCTAGAAGTGGAGACG 159
Query 116 ACAAATGGCACGTTCAAGCTTCATGACTACTTTGCCGATTCTTGGACCGTCCTCTTCTCT 175
||| ||| || |||||| |||||||||||||| ||| |||||||||||||||||||||||
Sbjct 160 ACACATGACAAGTTCAAACTTCATGACTACTTCGCCAATTCTTGGACCGTCCTCTTCTCT 219
Query 176 CATCCCGGGGATTTCACACCGGTATGCACCACGGAGCTTGGTGCGATGGCGAAATACGCT 235
|||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||
Sbjct 220 CATCCCGGGGATTTCACACCCGTGTGCACCACGGAGCTTGGTGCGATGGCCAAATACGCT 279
Query 236 CATGAGTTCGATAAGAGAGGCGTGAAGCTCCTTGGGT-TGTCTTGTGACGATGTACAGTC 294
||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 280 CATGAGTTCGATAAGAGAGGCGTGAAGCTCCTT-GGTCTGTCTTGTGACGATGTACAGTC 338
Query 295 ACACAAAGACTGGATCAAAGACATCGAAGCTTTTACGCACGGAAGCAAGGTGAAGTACCC 354
||||||||||||||||||||| || ||||| |||| ||||||||||||||||| |||||
Sbjct 339 ACACAAAGACTGGATCAAAGATATTGAAGCCTTTAATCACGGAAGCAAGGTGAATTACCC 398
Query 355 TATAATCGCTGACCCGAACAAAGAGATCATTCCTCAGCTTAACATGATTGATCCAATCGA 414
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 399 GATAATCGCTGACCCGAACAAAGAGATCATTCCTCAGCTTAACATGATTGATCCAATTGA 458
Query 415 GAATGGACCGTCTCGTGCCCTTCATATTGTTGGTCCTGATAGCAAGATAAAGTTGAGCTT 474
||| ||||||||||||||||||||||||||||||||||| || |||||||| ||||||||
Sbjct 459 GAACGGACCGTCTCGTGCCCTTCATATTGTTGGTCCTGACAGTAAGATAAAATTGAGCTT 518
Query 475 CTTGTATCCGTCGACCACGGGACGTAACATGGACGAAGTATTGAGGGCTTTAGACTCGTT 534
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 519 CTTGTATCCGTCGACCACGGGACGTAACATGGACGAAGTATTGAGGGCTTTAGACTCGTT 578
Query 535 GTTGATGGCGTCCAAGCACAATAACAAGATCGCCACTCCGGTTAACTGGAAACCGGATGA 594
||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
Sbjct 579 GTTGATGGCGTCCAAGCACAATAACAAGATCGCCACTCCGGTTAACTGGAAGCCAGATCA 638
Query 595 ACCGGTTGTGATTTCGCCTGCCGTGTCTGACGAAGAAGCCAAAAAGATGTTTCCTCAGGG 654
||||||||||||||||||||| ||||| ||||| ||||||||||||||||| || |||||
Sbjct 639 ACCGGTTGTGATTTCGCCTGCTGTGTCGGACGAGGAAGCCAAAAAGATGTTCCCACAGGG 698
Query 655 TTTCAAGACCGCCGATCTTCCGTCAAAGAAAGGCTATCTGCGTCACACTCAGGTCTCTTG 714
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 699 TTTCAAGACCGCCGATCTTCCGTCAAAGAAAGGCTATCTGCGTCACACAGAGGTCTCTTG 758
Query 715 AAA-GATAAAAACAAAAGCCTAATATAAAACGTA-ATACGAGTACTGTATGATATTAC-G 771
||| ||||| |||||||||||| |||| |||||| || | |||| |||||||||||| |
Sbjct 759 AAAAGATAATAACAAAAGCCTACTATATAACGTACATGCAAGTATTGTATGATATTAATG 818
Query 772 TGTT---G-ACG---AAA-A----TAATTACGTTTTGTAACGTATGATGATTGATGATGT 819
| || | ||| ||| | ||||||||||| |||||||||| |||| |||| ||
Sbjct 819 TTTTTACGTACGTGTAAACAAAAATAATTACGTTT-GTAACGTATGGTGAT-GATG-TG- 874
Query 820 GTTGCACTAGGTGTA 834
|| ||||||||||||
Sbjct 875 GT-GCACTAGGTGTA 888
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40639424923
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5