BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473951 Length=834 Score E Sequences producing significant alignments: (Bits) Value AT1G48130.1 | Symbols: ATPER1, PER1 | 1-cysteine peroxiredoxin ... 1088 0.0 > AT1G48130.1 | Symbols: ATPER1, PER1 | 1-cysteine peroxiredoxin 1 | chr1:17780502-17781727 FORWARD LENGTH=986 Length=986 Score = 1088 bits (589), Expect = 0.0 Identities = 730/795 (92%), Gaps = 22/795 (3%) Strand=Plus/Plus Query 56 AAAGATAAGATGCCAGGGATCACACTAGGAGACACGGTACCGAACCTAGAAGTGGAGACG 115 |||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 100 AAAGGTAAAATGCCAGGGATCACACTAGGAGACACGGTGCCGAACCTAGAAGTGGAGACG 159 Query 116 ACAAATGGCACGTTCAAGCTTCATGACTACTTTGCCGATTCTTGGACCGTCCTCTTCTCT 175 ||| ||| || |||||| |||||||||||||| ||| ||||||||||||||||||||||| Sbjct 160 ACACATGACAAGTTCAAACTTCATGACTACTTCGCCAATTCTTGGACCGTCCTCTTCTCT 219 Query 176 CATCCCGGGGATTTCACACCGGTATGCACCACGGAGCTTGGTGCGATGGCGAAATACGCT 235 |||||||||||||||||||| || |||||||||||||||||||||||||| ||||||||| Sbjct 220 CATCCCGGGGATTTCACACCCGTGTGCACCACGGAGCTTGGTGCGATGGCCAAATACGCT 279 Query 236 CATGAGTTCGATAAGAGAGGCGTGAAGCTCCTTGGGT-TGTCTTGTGACGATGTACAGTC 294 ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| Sbjct 280 CATGAGTTCGATAAGAGAGGCGTGAAGCTCCTT-GGTCTGTCTTGTGACGATGTACAGTC 338 Query 295 ACACAAAGACTGGATCAAAGACATCGAAGCTTTTACGCACGGAAGCAAGGTGAAGTACCC 354 ||||||||||||||||||||| || ||||| |||| ||||||||||||||||| ||||| Sbjct 339 ACACAAAGACTGGATCAAAGATATTGAAGCCTTTAATCACGGAAGCAAGGTGAATTACCC 398 Query 355 TATAATCGCTGACCCGAACAAAGAGATCATTCCTCAGCTTAACATGATTGATCCAATCGA 414 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 399 GATAATCGCTGACCCGAACAAAGAGATCATTCCTCAGCTTAACATGATTGATCCAATTGA 458 Query 415 GAATGGACCGTCTCGTGCCCTTCATATTGTTGGTCCTGATAGCAAGATAAAGTTGAGCTT 474 ||| ||||||||||||||||||||||||||||||||||| || |||||||| |||||||| Sbjct 459 GAACGGACCGTCTCGTGCCCTTCATATTGTTGGTCCTGACAGTAAGATAAAATTGAGCTT 518 Query 475 CTTGTATCCGTCGACCACGGGACGTAACATGGACGAAGTATTGAGGGCTTTAGACTCGTT 534 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 519 CTTGTATCCGTCGACCACGGGACGTAACATGGACGAAGTATTGAGGGCTTTAGACTCGTT 578 Query 535 GTTGATGGCGTCCAAGCACAATAACAAGATCGCCACTCCGGTTAACTGGAAACCGGATGA 594 ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| | Sbjct 579 GTTGATGGCGTCCAAGCACAATAACAAGATCGCCACTCCGGTTAACTGGAAGCCAGATCA 638 Query 595 ACCGGTTGTGATTTCGCCTGCCGTGTCTGACGAAGAAGCCAAAAAGATGTTTCCTCAGGG 654 ||||||||||||||||||||| ||||| ||||| ||||||||||||||||| || ||||| Sbjct 639 ACCGGTTGTGATTTCGCCTGCTGTGTCGGACGAGGAAGCCAAAAAGATGTTCCCACAGGG 698 Query 655 TTTCAAGACCGCCGATCTTCCGTCAAAGAAAGGCTATCTGCGTCACACTCAGGTCTCTTG 714 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 699 TTTCAAGACCGCCGATCTTCCGTCAAAGAAAGGCTATCTGCGTCACACAGAGGTCTCTTG 758 Query 715 AAA-GATAAAAACAAAAGCCTAATATAAAACGTA-ATACGAGTACTGTATGATATTAC-G 771 ||| ||||| |||||||||||| |||| |||||| || | |||| |||||||||||| | Sbjct 759 AAAAGATAATAACAAAAGCCTACTATATAACGTACATGCAAGTATTGTATGATATTAATG 818 Query 772 TGTT---G-ACG---AAA-A----TAATTACGTTTTGTAACGTATGATGATTGATGATGT 819 | || | ||| ||| | ||||||||||| |||||||||| |||| |||| || Sbjct 819 TTTTTACGTACGTGTAAACAAAAATAATTACGTTT-GTAACGTATGGTGAT-GATG-TG- 874 Query 820 GTTGCACTAGGTGTA 834 || |||||||||||| Sbjct 875 GT-GCACTAGGTGTA 888 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 40639424923 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5