BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg473956

Length=389
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G48190.1 | Symbols:  | Galactose oxidase/kelch repeat superf...   503    5e-142


> AT1G48190.1 | Symbols:  | Galactose oxidase/kelch repeat superfamily 
protein | chr1:17794560-17795163 REVERSE LENGTH=384
Length=384

 Score =  503 bits (272),  Expect = 5e-142
 Identities = 354/392 (90%), Gaps = 12/392 (3%)
 Strand=Plus/Plus

Query  1    ATGCGGGTTGACCGGAGCTCCTCTTCCTCCTCTGTAAGTCTACTTGACGGGAAGATATAC  60
            |||||||| ||||||||||||||||||||| |||||||||||||||| ||||||||||| 
Sbjct  1    ATGCGGGTGGACCGGAGCTCCTCTTCCTCCACTGTAAGTCTACTTGAGGGGAAGATATAT  60

Query  61   GTAGCAGGAGGGTTTGATCCAAAGACTCACACTTGGAGCTCTGTGACTAGCCCTAGCGCG  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  61   GTAGCAGGAGGGTTTGATCCAAAGACTCACACTTGGAGCTCTGTGACTAGCCCTAGCGCG  120

Query  121  GCGATACGCAATGGAAGGGTAGCTGAACACAGAAGCTTGGGACTTGGTGGAAAATTCCAC  180
            | |||||| |||| ||| ||||||||||||| ||||||||||||||||||||||||| ||
Sbjct  121  GTGATACGGAATGAAAGTGTAGCTGAACACAAAAGCTTGGGACTTGGTGGAAAATTCTAC  180

Query  181  ATCTTTGGTGATGTCTCTA-ATGAGTCTGGGGTGGTTTACAATCCCAAGGAAGACAACAT  239
             |||||||| ||| ||| | || |||||| |||||||||||||||||| ||||||||| |
Sbjct  181  CTCTTTGGTTATGACTC-AGATAAGTCTGCGGTGGTTTACAATCCCAAAGAAGACAACGT  239

Query  240  CTTGTTCTATTGGTTTCACGAACTCTTCCAGTGGTATGACTATAAGGTACA-TTTATGGA  298
            |||||||||| ||||||||| ||||||||| |||||||||||||||| | | ||| ||||
Sbjct  240  CTTGTTCTATAGGTTTCACGGACTCTTCCATTGGTATGACTATAAGGGAAACTTT-TGGA  298

Query  299  AGCAAGTGAACGGTCTTGAAGTTTTGCCAGTTGCTTGTACGGAGAAAGTTA-CGATTCTC  357
            |||||||||| |||||||  |    |||||||||||||||||||||||| | ||||||||
Sbjct  299  AGCAAGTGAATGGTCTTG--G----GCCAGTTGCTTGTACGGAGAAAGT-AGCGATTCTC  351

Query  358  GCAGCCCTTGATACGTTTGACAACACAGGATG  389
            |||||||| ||||||||||||||| || ||||
Sbjct  352  GCAGCCCTCGATACGTTTGACAACGCAAGATG  383



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18347728385


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5