BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473964
Length=1977
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48280.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 2880 0.0
> AT1G48280.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr1:17835088-17837717 FORWARD LENGTH=1949
Length=1949
Score = 2880 bits (1559), Expect = 0.0
Identities = 1849/1983 (93%), Gaps = 43/1983 (2%)
Strand=Plus/Plus
Query 1 CAGCTTCGAAGTCGTCTCTTGGATTTTTACGAGTCAAAA-CTGAGTAAGACTTTAGCGAC 59
|||||||||||||||||||||||||||||| |||||||| ||||||||||| ||| | ||
Sbjct 1 CAGCTTCGAAGTCGTCTCTTGGATTTTTACAAGTCAAAAGCTGAGTAAGACGTTAACCAC 60
Query 60 GAGTCGTCTCGCCGGTGACCGCCGT-ATACGGCGGAGATTTTGTTAGTTATGTCCCGCAT 118
||||| ||||||||| ||||| ||| | ||||||||||||||||||||||||||||||||
Sbjct 61 GAGTCTTCTCGCCGGCGACCGTCGTCA-ACGGCGGAGATTTTGTTAGTTATGTCCCGCAT 119
Query 119 TTCCACCGCCTCCACTACTCCTTCTCGTGTTAGAGCTGCGAATTCGCACTATTCAGTGAT 178
||||||| |||||||||||||||| || || |||||||||||||||||||| ||||||||
Sbjct 120 TTCCACCACCTCCACTACTCCTTCACGCGTGAGAGCTGCGAATTCGCACTACTCAGTGAT 179
Query 179 CTCTAAACCTAGAGCCCAAGACGATAACGGTCTCACCGGAGGTAAACCGAAATCGTCCGG 238
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 180 CTCTAAACCTAGAGCACAAGACGATAACGGTCTCACCGGAGGTAAACCGAAATCGTCAGG 239
Query 239 TCACGATGTGAAGAATGATCCGGCTAAGAACCGGCGATCAATTCTGCTTAAAAGAGCGAA 298
| |||||||||| |||||||| || ||| ||||||||||||||||| |||||||||||
Sbjct 240 TTACGATGTGAAAAATGATCCAGC---GAAACGGCGATCAATTCTGCTGAAAAGAGCGAA 296
Query 299 ATCCGGAGAGGAGGAGACGGCGGTTTTGGCTCCTCAGAGAGCTCGGTCTGTGAATCGTCC 358
||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 297 ATCTGCAGAGGAGGAGATGGCGGTTTTGGCTCCTCAGAGAGCTCGGTCTGTGAATCGTCC 356
Query 359 GGCGGTCGTAGAGCAATTCGGTTGTCCGAGGCGGCCAATTTCTAGGAAAA-CTGAAGAGT 417
|||||| ||||||||||||||||||||||||||||| |||||| | |||| | ||||||
Sbjct 357 GGCGGTTGTAGAGCAATTCGGTTGTCCGAGGCGGCCGATTTCTCGAAAAAGC-GAAGAGA 415
Query 418 CAGTAATGGCTACGGCGGTGGTGGCGGAGGATGAGAAGAGGAAGAGAATGAAGGAATTGG 477
| ||||||||||| || || |||||||||||||||||||||||||||| |||||||||
Sbjct 416 CGGTAATGGCTACAGC---GGCGGCGGAGGATGAGAAGAGGAAGAGAATGGAGGAATTGG 472
Query 478 AGGAGAAGCTAGTAGTGAATGAGTCGTTGATTGAGGATTTGCAGTTGCAGGTTTTGCATT 537
|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 473 AGGAGAAGCTGGTAGTGAATGAGTCGTTGATTAAGGATTTGCAGTTGCAGGTTTTGAATT 532
Query 538 TGAAAACGGAGTTAGAGGAAGCTCGTAATTCAAATGCAGAGCTTGAGTTGAAGAACAAGA 597
|||||||||||||||||||||||||||||||||||| ||||||||||||||| || | ||
Sbjct 533 TGAAAACGGAGTTAGAGGAAGCTCGTAATTCAAATGTAGAGCTTGAGTTGAATAATAGGA 592
Query 598 AGCTTTCTCAGGATCTTGCTTCAGCTGAAGCTAAGATCTCATCACTTTCCTCTAACGACA 657
|||||||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||
Sbjct 593 AGCTTTCTCAGGATCTTGTTTCAGCTGAAGCTAAGATCTCATCTCTTTCTTCTAACGACA 652
Query 658 AGCCAGCTAAAGAACATCAGAACACCAGATTCAAAGATATCCAGAGGTTAATAGCTAGCA 717
||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 653 AGCCAGCTAAAGAACATCAAAACAGCAGATTCAAAGATATCCAGAGGTTAATAGCTAGCA 712
Query 718 AATTAGAGCAATCCAAGGTTAAAAAGGAGGTAGCAGTAGAGTCATCAAGCTCCATTAAAA 777
||||||||||| |||||||||| |||||||||||||||||||||||||| | |
Sbjct 713 AATTAGAGCAACCCAAGGTTAAGAAGGAGGTAGCAGTAGAGTCATCAAG----A-T---- 763
Query 778 CAAGATCATCTCCACAACCACCAGCACCTTCACCTTCAAGATTACAGCCAACACCGCCAT 837
| |||| |||||| ||||||| ||||||||||||| ||||||||||||||
Sbjct 764 -----T-ATCT------CCACCATCACCTTCTCCTTCAAGATTACCGCCAACACCGCCAT 811
Query 838 TGCCGAAGTTTTTGGTGTCTCCAGCTAGCAGTTTAGGTAAAAGAGATGAAAGTTCTTCAC 897
| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 812 TACCGAAGTTTTTGGTGTCTCCAGCTAGCAGTTTAGGTAAAAGAGATGAAAATTCTTCAC 871
Query 898 CCTTTGcaccaccaacaccaccgcctccaccaccaccaccaccaccTAGGCCTCTTGCTA 957
|||||||||| ||||||||||||||||| || ||||||||||||||||| ||||||||||
Sbjct 872 CCTTTGCACCTCCAACACCACCGCCTCCGCCGCCACCACCACCACCTAGACCTCTTGCTA 931
Query 958 AAGCAGCTCGTGCGCAGAAGTCTCCTCCAGTTTCGCAGTTATTTCAGTTGTTGAAGAAGC 1017
||||||||||||| |||||||||||||||||||| ||| |||||||||||||||| ||||
Sbjct 932 AAGCAGCTCGTGCTCAGAAGTCTCCTCCAGTTTCACAGCTATTTCAGTTGTTGAATAAGC 991
Query 1018 AAGATAATAGTAGAGACCTTTCTCAGTCTGTTAATGGGAATCAA-TCTCAAGTTAACAGT 1076
|||||||||||||| |||||||||||||||||||||||||| || |||||||||||||||
Sbjct 992 AAGATAATAGTAGAAACCTTTCTCAGTCTGTTAATGGGAAT-AAGTCTCAAGTTAACAGT 1050
Query 1077 GCTCACAACAGTATAGTCGGAGAAATTCAAAACCGTTCTGCGCACCTCATCGCTATAAAA 1136
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1051 GCTCACAACAGTATAGTCGGAGAAATTCAAAACCGTTCTGCGCATCTCATCGCTATAAAA 1110
Query 1137 GCTGATATAGAGACAAAGGGGGATTTTATCAATGATCTTATCCAGAAAGTTCTGACCACT 1196
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1111 GCTGATATAGAGACAAAAGGGGAGTTTATCAATGATCTTATCCAGAAAGTTCTGACCACT 1170
Query 1197 TGTTTTTCGGATATGGAAGATGTCATGAAATTTGTGGATTGGCTTGATAAAGAACTAGCA 1256
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1171 TGTTTTTCGGATATGGAAGATGTCATGAAATTTGTGGATTGGCTTGATAAAGAACTGGCA 1230
Query 1257 ACTCTGGCTGATGAGCGAGCTGTGCTTAAGCATTTCAAGTGGCCTGAGAAGAAAGCCGAT 1316
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1231 ACTCTGGCTGATGAGCGTGCTGTGCTTAAGCATTTCAAGTGGCCTGAGAAGAAAGCCGAT 1290
Query 1317 GCCTTGCAAGAGGCTGCAGTTGAATACCGCGAGCTAAAGAAACTGGAAAAAGAACTATCT 1376
|| ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 1291 ACCCTGCAAGAGGCTGCAGTTGAATACCGTGAGCTAAAGAAACTGGAAAAAGAACTTTCT 1350
Query 1377 TCGTACTCTGATGATCCGAGCATTCACTACGGTGTTGCCCTGAAGAAAATGGCCAACTTA 1436
|| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1351 TCCTACTCTGATGATCCGAACATTCACTACGGTGTTGCCCTGAAGAAAATGGCCAACTTA 1410
Query 1437 CTAGACAAGTCGGAGCAGAGGATAAGGAGGCTAGTCAGATTACGTGGCTCATCCATGCGT 1496
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1411 CTAGACAAGTCGGAGCAGAGGATAAGGAGGCTAGTCAGATTACGTGGCTCATCCATGCGT 1470
Query 1497 TCTTACCAAGACTTTAAGATCCCAGTCGAGTGGATGCTTGACTCGGGAATGATAAGCAAG 1556
|||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1471 TCTTACCAGGACTTTAAGATCCCAGTCGAGTGGATGCTTGACTCGGGAATGATATGCAAG 1530
Query 1557 ATCAAAAGAGCATCGATCAAGCTTGCTAGAACTTACATGAATAGAGTAGCGAATGAGCTA 1616
|||||||||||||||||||| ||||| | ||| ||||||||||||||||||||||||||
Sbjct 1531 ATCAAAAGAGCATCGATCAAACTTGCGAAAACCTACATGAATAGAGTAGCGAATGAGCTG 1590
Query 1617 CAATCAGCTCGTAACTTGGATAGAGAGTCTACTCAAGAAGCATTGCTTCTTCAAGGCGTC 1676
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1591 CAATCAGCTCGTAACTTGGATAGAGAGTCTACTAAAGAAGCATTGCTTCTTCAAGGCGTC 1650
Query 1677 CGATTTGCTTACAGAACGCATCAGTTTGCGGGAGGGCTCGATCCAGAGACATTGTGTGCA 1736
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1651 CGATTTGCTTACAGAACGCACCAGTTTGCGGGAGGGCTCGATCCAGAGACATTGTGTGCA 1710
Query 1737 TTAGAAGAGATTAAGCAACGTGTTCCGAGTCATCTCCGGCTGGCACGGGGGAATATGGCC 1796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1711 TTAGAAGAGATTAAGCAACGTGTTCCGAGTCATCTCCGGCTGGCACGGGGGAATATGGCC 1770
Query 1797 GGAACTCCGTCGTAGAAAAGTAATCAGAGAAATGTGAGGCATATGGCCTTTGGTTTTGGC 1856
|||| || |||||||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 1771 GGAAATCTGTCGTAGAAAAGTAATCAGAGAAATGTGAGGCATATGGGCTGTGGTTCTGGC 1830
Query 1857 TATAAA-TTCGTTATTTGTGTTAATAGTGTTTGGTTGAGTCAGTAAATGTTGTGGCCCAC 1915
|| ||| |||||||||||||||||||||||||||| ||||||| |||||| ||||
Sbjct 1831 TACAAAATTCGTTATTTGTGTTAATAGTGTTTGGT-GAGTCAG-----GTTGTGTCCCAT 1884
Query 1916 GTAATAATAATGTTA-AAGTGAATCTAAAATGTTCCTCCAATGAATTACTCAATTAAATT 1974
|||||||||||||| || || |||||||||||||||||| |||||||||||||||| ||
Sbjct 1885 TTAATAATAATGTTATAA-TGTATCTAAAATGTTCCTCCAGTGAATTACTCAATTAATTT 1943
Query 1975 TTG 1977
|||
Sbjct 1944 TTG 1946
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97941263295
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5