BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg473967

Length=698
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G48320.1 | Symbols:  | Thioesterase superfamily protein | ch...   931    0.0  
  AT1G48315.1 | Symbols:  | other RNA | chr1:17854117-17855811 FO...   287    1e-76


> AT1G48320.1 | Symbols:  | Thioesterase superfamily protein | 
chr1:17854813-17855715 REVERSE LENGTH=820
Length=820

 Score =  931 bits (504),  Expect = 0.0
 Identities = 597/641 (93%), Gaps = 10/641 (2%)
 Strand=Plus/Plus

Query  1    AAAACCCATTTCATCGAAATTTCCAC-TGACGTTAATCCCAACAACCACCAATTCAATCC  59
            |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct  1    AAAACCCATTTCATCGAAATTTCCACTTGACGTTAATCCCAACTACCACCAATTCAATCC  60

Query  60   ATTTCTCAATCTCTTTTATCATCTCTAACACACCCA---T-CCTACCT--ACCTCTGAAA  113
            ||||||||| |||| |||||||||||||||||||||   | |||||||  | ||||    
Sbjct  61   ATTTCTCAAACTCTCTTATCATCTCTAACACACCCACCCTACCTACCTCCATCTCTCTCT  120

Query  114  CAG-AACAGAGCACACAAATGGATTCTGCATCGTCCAAGACCAAAGCTATAGACCCTCCT  172
            | | ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| 
Sbjct  121  CTGCAACAGAGCACAAAAATGGATTCTGCATCGTCCAACACCAAAGCTATAGACCCTCCA  180

Query  173  CTTCACATGTTAGGTTTCGAGTTCGATGAATTATCTCCAACACGTGTAACAGGTCGTCTT  232
            ||||||||||| |||||||||||||||||||||||||| |||||| | |||||||| |||
Sbjct  181  CTTCACATGTTGGGTTTCGAGTTCGATGAATTATCTCCGACACGTATCACAGGTCGCCTT  240

Query  233  CCCGTTTCT-CCAACATGTTGCCAGCCTTTCAAGGTGTTACATGGTGGTGTATCTGCTTT  291
            || |||||| ||  | || ||||||||||||||||||||||| |||||||||||||||||
Sbjct  241  CCTGTTTCTCCCGTC-TGCTGCCAGCCTTTCAAGGTGTTACACGGTGGTGTATCTGCTTT  299

Query  292  GATCGCTGAGTCTTTAGCAAGTATGGGAGCTCACATGGCTTCTGGTTTCAAAAGGGTCGC  351
            ||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  300  GATAGCCGAGTCTTTAGCAAGTATGGGAGCTCACATGGCTTCTGGTTTCAAAAGGGTCGC  359

Query  352  TGGAATTCAACTCTCAATCAACCACTTGAAGAGTGCTGATCTCGGAGACCTTGTCTTCGC  411
            |||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct  360  TGGAATTCAACTCTCAATCAACCATTTGAAGAGTGCTGATCTTGGAGACCTTGTCTTCGC  419

Query  412  CGAAGCAACTCCTGTAAGCACAGGGAAGACTATTCAGGTTTGGGAAGTCAAGTTATGGAA  471
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  420  CGAAGCAACTCCTGTAAGCACAGGGAAGACTATTCAGGTTTGGGAAGTCAAGTTATGGAA  479

Query  472  AACAACAGAGAAAAATAAAGCTAACAAGATCTTAATATCTTCCTCTAGAGTCACACTTAT  531
            ||||||| ||||| ||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct  480  AACAACACAGAAAGATAAAGCTAACAAAATCTTAATATCTTCCTCTAGAGTTACACTTAT  539

Query  532  CTGTAATCTTCCTATCCCTGATAATGCCAAAGATGCAGCAAACATGCTCAAAATGATCGC  591
            ||||||||| |||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct  540  CTGTAATCTACCTATCCCTGATAACGCCAAAGATGCAGCAAACATGCTCAAAATGGTCGC  599

Query  592  AAAGTTGTAGAttttttcaggcttttttgttttACTTGTAT  632
            |||||||||||||| ||||||||||||||||||||||||||
Sbjct  600  AAAGTTGTAGATTTCTTCAGGCTTTTTTGTTTTACTTGTAT  640


> AT1G48315.1 | Symbols:  | other RNA | chr1:17854117-17855811 
FORWARD LENGTH=1059
Length=1059

 Score =  287 bits (155),  Expect = 1e-76
 Identities = 165/170 (97%), Gaps = 0/170 (0%)
 Strand=Plus/Minus

Query  255  AGCCTTTCAAGGTGTTACATGGTGGTGTATCTGCTTTGATCGCTGAGTCTTTAGCAAGTA  314
            ||||||||||||||||||| |||||||||||||||||||| || ||||||||||||||||
Sbjct  618  AGCCTTTCAAGGTGTTACACGGTGGTGTATCTGCTTTGATAGCCGAGTCTTTAGCAAGTA  559

Query  315  TGGGAGCTCACATGGCTTCTGGTTTCAAAAGGGTCGCTGGAATTCAACTCTCAATCAACC  374
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  558  TGGGAGCTCACATGGCTTCTGGTTTCAAAAGGGTCGCTGGAATTCAACTCTCAATCAACC  499

Query  375  ACTTGAAGAGTGCTGATCTCGGAGACCTTGTCTTCGCCGAAGCAACTCCT  424
            | ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  498  ATTTGAAGAGTGCTGATCTTGGAGACCTTGTCTTCGCCGAAGCAACTCCT  449



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33807580931


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5