BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg473968

Length=395
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G48325.1 | Symbols:  | Expressed protein | chr1:17857271-178...   518    2e-146


> AT1G48325.1 | Symbols:  | Expressed protein | chr1:17857271-17857722 
FORWARD LENGTH=452
Length=452

 Score =  518 bits (280),  Expect = 2e-146
 Identities = 324/344 (94%), Gaps = 8/344 (2%)
 Strand=Plus/Plus

Query  1    ctctctctctctctctACAAAGTATACATGAAAATGGGAGGTGACAAGAGGAGGAGGAAA  60
            |||||||||||||||||||||||||||||||||||||||||| ||  |||||||||||||
Sbjct  29   CTCTCTCTCTCTCTCTACAAAGTATACATGAAAATGGGAGGTCACGGGAGGAGGAGGAAA  88

Query  61   TCGTCATCATCTTTTTCTGTAATCAAATCGTTGTTTTCGCGTTGTTCGAATGAAAAAGAC  120
            || |||||||||||||||||| | |||||||||||| ||||||||||||| |||||||||
Sbjct  89   TCATCATCATCTTTTTCTGTAGTAAAATCGTTGTTTGCGCGTTGTTCGAAGGAAAAAGAC  148

Query  121  AATTGGAACGAAGAGAGAGTCATCAATGTTAGACCAAGAATCATGACCACGGACGATGAT  180
            |||||||||||||||||| | ||||||||||||||||||||||||||||| |||||||||
Sbjct  149  AATTGGAACGAAGAGAGAATGATCAATGTTAGACCAAGAATCATGACCACCGACGATGAT  208

Query  181  GGATGTTCTT-G--GATTGCTGAGCCTTGTATTGATAGGAGAGCCACGGCTTTTATTGCT  237
            |||||||||| |  ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  209  GGATGTTCTTGGACGATTGCTGAGCCTTGTATTGATAGGAGAGCCACGGCTTTTATTGCT  268

Query  238  AAGTTTCACGAAACTCCAATACAAGATCCTGAATAGAA-GATTATTGCTCCTTAAGATGT  296
            ||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct  269  AAGTTTCACGAAACTCCAATACAAGATACTGAATAGAAAGATTATTGCTCCTTAAGATGT  328

Query  297  AAATGTAATATATATGTCTTAATGATTAGTACTCTTTTTCTTAG  340
            || |  | ||||||||||||||||||||||||||||||||||||
Sbjct  329  AA-T--A-TATATATGTCTTAATGATTAGTACTCTTTTTCTTAG  368



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18649334879


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5