BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473969 Length=511 Score E Sequences producing significant alignments: (Bits) Value AT1G48330.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 662 0.0 AT3G17580.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 174 6e-43 > AT1G48330.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G17580.1); Has 40 Blast hits to 40 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17863837-17864386 FORWARD LENGTH=550 Length=550 Score = 662 bits (358), Expect = 0.0 Identities = 477/529 (90%), Gaps = 29/529 (5%) Strand=Plus/Plus Query 1 AAAGAGAAGCATTTTCAAGAAGAATTCTTAAGTTCT-------AAAC--aa--a-aaaaa 48 |||||||||||||||||||||||| |||||| |||| |||| || | ||||| Sbjct 1 AAAGAGAAGCATTTTCAAGAAGAAGTCTTAAATTCTAAACAAAAAACAAAAGCATAAAAA 60 Query 49 aTGGCTTCATGGAAGAAAACAATCGCAACACCATTCAAGAAAGCGGCCACGTTCTTTAAC 108 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 61 ATGGCTTCATGGAAGAAAACAATCGCAACACCATTCAAGAAAGCGGCAACGTTCTTTAAC 120 Query 109 -AACCCGCAGCAATCACCGCACAACCGCCACGCAAACGCAAAGGCGAGAGAAGAACATGA 167 |||| ||||||| || | | | |||||||||||||||||||||||||||||||||||| Sbjct 121 CAACC-GCAGCAA--AC-G-A-A-CCGCCACGCAAACGCAAAGGCGAGAGAAGAACATGA 173 Query 168 GAGACGAACCGTGCAGGAGCTTCAAGGTGATGTCATGGCTTGTGGTTATGAAGATGTCCT 227 || |||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 174 GAAACGAACGGTACAGGAGCTTCAAGGTGATGTCATGGCTTGTGGTTATGAAGATGTCCT 233 Query 228 CGTCATGTGGTCAATTCTTGACAAGTCAAACTCTTCAAACAATCTCTCTTCTTGATTAGA 287 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 234 CGTCATGTGGTCAATTCTTGACAAGTCAAACTCTTCAAACAACCTCTCTTCTTGATTAGA 293 Query 288 ATGAGAAAGAATCCGAAATGTCTCCTTTCATTTTCTCTCtttttttATGTGTATAGGT-T 346 ||||||| ||||||||||| |||| ||| |||||||||||||| ||||||||||| | Sbjct 294 ATGAGAAGGAATCCGAAATTTCTCTTTTTATTTTCTCTCTTTT---ATGTGTATAGGAAT 350 Query 347 GTATTAGCCCGCCATGTCTCTCATATTTCCCCTTATCTTTATGTGGTCGTGGCTTTTTTA 406 |||| |||||| |||| ||||| | | || |||| |||||||||||||||||||||| || Sbjct 351 GTATAAGCCCGTCATGCCTCTCTTCTATCTCCTTGTCTTTATGTGGTCGTGGCTTTTCTA 410 Query 407 AATTTAGAACTTTAGTGAATTTTTATCCGATGACTAGTT--T--GGATTCGGATGTTAGT 462 ||||||||| ||||||||||||||||||||||||||||| | |||||||||||||| | Sbjct 411 AATTTAGAATTTTAGTGAATTTTTATCCGATGACTAGTTAATTTGGATTCGGATGTTATT 470 Query 463 AATCCCTGTGATGATCTATCTAATTTCACGGTGAGATTTTTCATTTTGG 511 ||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 471 AATCCCTGTGATGATCTATCTAATT-CACGGTGAGATTTTTCATTTTGG 518 > AT3G17580.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G48330.1); Has 40 Blast hits to 40 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:6015184-6015850 FORWARD LENGTH=667 Length=667 Score = 174 bits (94), Expect = 6e-43 Identities = 206/258 (80%), Gaps = 16/258 (6%) Strand=Plus/Plus Query 36 TAAACa-aaaaaaaaTGGCTTCATGGAAGAAAACAATCGCAACACCATTCAAGAAAGCGG 94 |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 79 TAAACACTAAAAAAATGGCATCATGGAAGAAAACAATCGCAACACCATTCAAGAAAGCGG 138 Query 95 CCACGTTCTTTAAC-AACCCGCAGCAATCACCGCACAACCG---CCACGCAA-AC-GCAA 148 | || ||||| ||| |||| || |||||||| | || | || | || | | | Sbjct 139 CAACATTCTTCAACCAACCT-CAACAATCACCAAAGAAGGGTTGCCGTGGAAGAATGGAT 197 Query 149 AG-GCGAG--AG--AAGAACATGAGA-GACGAACCGTGCAGGAGCTTCAAGGTGATGTCA 202 | || || || |||| || |||| || ||| || || ||||||||||| || |||| Sbjct 198 -GCGCAAGCCAGGGAAGAGCACGAGAAGA-GAATGGTTCAAGAGCTTCAAGGAGAAGTCA 255 Query 203 TGGCTTGTGGTTATGAAGATGTCCTCGTCATGTGGTCAATTCTTGACAAGTCAAACTCTT 262 ||||||||||||| || || ||||||||||||||||| ||||||||||| || ||||| | Sbjct 256 TGGCTTGTGGTTACGACGACGTCCTCGTCATGTGGTCTATTCTTGACAAATCTAACTCCT 315 Query 263 CAAACAATCTCTCTTCTT 280 |||| || |||||||||| Sbjct 316 CAAATAACCTCTCTTCTT 333 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24413795442 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5