BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473969
Length=511
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48330.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 662 0.0
AT3G17580.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 174 6e-43
> AT1G48330.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G17580.1);
Has 40 Blast hits to 40 proteins in 11 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17863837-17864386
FORWARD LENGTH=550
Length=550
Score = 662 bits (358), Expect = 0.0
Identities = 477/529 (90%), Gaps = 29/529 (5%)
Strand=Plus/Plus
Query 1 AAAGAGAAGCATTTTCAAGAAGAATTCTTAAGTTCT-------AAAC--aa--a-aaaaa 48
|||||||||||||||||||||||| |||||| |||| |||| || | |||||
Sbjct 1 AAAGAGAAGCATTTTCAAGAAGAAGTCTTAAATTCTAAACAAAAAACAAAAGCATAAAAA 60
Query 49 aTGGCTTCATGGAAGAAAACAATCGCAACACCATTCAAGAAAGCGGCCACGTTCTTTAAC 108
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 61 ATGGCTTCATGGAAGAAAACAATCGCAACACCATTCAAGAAAGCGGCAACGTTCTTTAAC 120
Query 109 -AACCCGCAGCAATCACCGCACAACCGCCACGCAAACGCAAAGGCGAGAGAAGAACATGA 167
|||| ||||||| || | | | ||||||||||||||||||||||||||||||||||||
Sbjct 121 CAACC-GCAGCAA--AC-G-A-A-CCGCCACGCAAACGCAAAGGCGAGAGAAGAACATGA 173
Query 168 GAGACGAACCGTGCAGGAGCTTCAAGGTGATGTCATGGCTTGTGGTTATGAAGATGTCCT 227
|| |||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 GAAACGAACGGTACAGGAGCTTCAAGGTGATGTCATGGCTTGTGGTTATGAAGATGTCCT 233
Query 228 CGTCATGTGGTCAATTCTTGACAAGTCAAACTCTTCAAACAATCTCTCTTCTTGATTAGA 287
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 234 CGTCATGTGGTCAATTCTTGACAAGTCAAACTCTTCAAACAACCTCTCTTCTTGATTAGA 293
Query 288 ATGAGAAAGAATCCGAAATGTCTCCTTTCATTTTCTCTCtttttttATGTGTATAGGT-T 346
||||||| ||||||||||| |||| ||| |||||||||||||| ||||||||||| |
Sbjct 294 ATGAGAAGGAATCCGAAATTTCTCTTTTTATTTTCTCTCTTTT---ATGTGTATAGGAAT 350
Query 347 GTATTAGCCCGCCATGTCTCTCATATTTCCCCTTATCTTTATGTGGTCGTGGCTTTTTTA 406
|||| |||||| |||| ||||| | | || |||| |||||||||||||||||||||| ||
Sbjct 351 GTATAAGCCCGTCATGCCTCTCTTCTATCTCCTTGTCTTTATGTGGTCGTGGCTTTTCTA 410
Query 407 AATTTAGAACTTTAGTGAATTTTTATCCGATGACTAGTT--T--GGATTCGGATGTTAGT 462
||||||||| ||||||||||||||||||||||||||||| | |||||||||||||| |
Sbjct 411 AATTTAGAATTTTAGTGAATTTTTATCCGATGACTAGTTAATTTGGATTCGGATGTTATT 470
Query 463 AATCCCTGTGATGATCTATCTAATTTCACGGTGAGATTTTTCATTTTGG 511
||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 471 AATCCCTGTGATGATCTATCTAATT-CACGGTGAGATTTTTCATTTTGG 518
> AT3G17580.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT1G48330.1);
Has 40 Blast hits to 40 proteins in 11 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 40; Viruses
- 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr3:6015184-6015850
FORWARD LENGTH=667
Length=667
Score = 174 bits (94), Expect = 6e-43
Identities = 206/258 (80%), Gaps = 16/258 (6%)
Strand=Plus/Plus
Query 36 TAAACa-aaaaaaaaTGGCTTCATGGAAGAAAACAATCGCAACACCATTCAAGAAAGCGG 94
|||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 79 TAAACACTAAAAAAATGGCATCATGGAAGAAAACAATCGCAACACCATTCAAGAAAGCGG 138
Query 95 CCACGTTCTTTAAC-AACCCGCAGCAATCACCGCACAACCG---CCACGCAA-AC-GCAA 148
| || ||||| ||| |||| || |||||||| | || | || | || | | |
Sbjct 139 CAACATTCTTCAACCAACCT-CAACAATCACCAAAGAAGGGTTGCCGTGGAAGAATGGAT 197
Query 149 AG-GCGAG--AG--AAGAACATGAGA-GACGAACCGTGCAGGAGCTTCAAGGTGATGTCA 202
| || || || |||| || |||| || ||| || || ||||||||||| || ||||
Sbjct 198 -GCGCAAGCCAGGGAAGAGCACGAGAAGA-GAATGGTTCAAGAGCTTCAAGGAGAAGTCA 255
Query 203 TGGCTTGTGGTTATGAAGATGTCCTCGTCATGTGGTCAATTCTTGACAAGTCAAACTCTT 262
||||||||||||| || || ||||||||||||||||| ||||||||||| || ||||| |
Sbjct 256 TGGCTTGTGGTTACGACGACGTCCTCGTCATGTGGTCTATTCTTGACAAATCTAACTCCT 315
Query 263 CAAACAATCTCTCTTCTT 280
|||| || ||||||||||
Sbjct 316 CAAATAACCTCTCTTCTT 333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24413795442
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5