BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473972
Length=2754
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48360.2 | Symbols: | zinc ion binding;nucleic acid binding... 3655 0.0
> AT1G48360.2 | Symbols: | zinc ion binding;nucleic acid binding;hydrolases,
acting on acid anhydrides, in phosphorus-containing
anhydrides | chr1:17868650-17873031 FORWARD LENGTH=2772
Length=2772
Score = 3655 bits (1979), Expect = 0.0
Identities = 2304/2455 (94%), Gaps = 46/2455 (2%)
Strand=Plus/Plus
Query 314 TTCTGAAACTTCTCAATTCAATTTGGTGCAAAGAAGTGA--C-------TCCATTTGCTG 364
||||||||||| | |||||| |||||||||||||||||| | || ||||||||
Sbjct 350 TTCTGAAACTTTTGAATTCAGTTTGGTGCAAAGAAGTGAGCCTAGTGAGTCTATTTGCTG 409
Query 365 CAAGGCTGAAGATGGTTCATGTTCTCCAAGTAGTGAGGAG-GTTTTGAAAACTGTGACTT 423
||||| ||||||||||||||||||||||||||| |||||| | |||||||||||||||||
Sbjct 410 CAAGGTTGAAGATGGTTCATGTTCTCCAAGTAGGGAGGAGAG-TTTGAAAACTGTGACTT 468
Query 424 TAGATGAAGCCAATGGTGAGGCTATTGAAACCTTTATAGTTGGTAGGAAGTTCAGTGATG 483
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 469 TAGATGAAGACAATGGTGAGGCTATTGAAACCTTTATAGTTGGTAGGAAGTTCAGTGATG 528
Query 484 TTCAGGATTTAGAAATTGGGGGTAACATTTTCCTTTTGAGACATCCTGAGAATGTCAAGG 543
||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| |
Sbjct 529 TTCAGGATTTAGAAATTGGGGGTGACATTTTTCTTTTGAGACATCCTGAGAATGTCAAAG 588
Query 544 ATCGCAACGCTATAAAGGTTGTTTCTGCAGACTCTGAAATGCTTGGGTATCTACCTAAAG 603
|||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 589 ATCGAAACGCTATAAAGGTTATTTCTGGAGACTCTGAAATGCTTGGGTATCTACCTAAAG 648
Query 604 ATATTTCCCAGTGCTTGTCCCCGCTGATCGATGACTATGGCCTTAAGTTTGAGGGAACAA 663
|||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 649 ATATATCCCAGTGCTTGTCCCCGCTGATCGATGACTATGACCTTAAGTTTGAGGGAACGA 708
Query 664 TAACATCTGTTCCGAAGAACTCTTCTGAAGCTGTTCCGATCAAAGTTGTTTGTCACAAGA 723
||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||
Sbjct 709 TAACATCTGTTCCGAAGAAATCTTCTGAAGCTGTTCTGATCAAGGTTGTTTGTCACAAGA 768
Query 724 TGACATCTGATGGTTGGAAGGAATGTGAATTTTATGGAGATTTTAAACCTCTTTGGGAGA 783
||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 769 TGAGATCTGATGGTTGGAAGGAATGTGAATTGTATGGAGATTTTAAACCTCTTTGGGAGA 828
Query 784 AAGTTCTTCAGGTTGTTGAGCATCAGATGCAATTTCCGCCTAAAACAACAAGATACCAGT 843
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 829 AAGTTCTTCAGGTTGTTGAGCATCAGATGCAATTTCCGCCTAAAACAACAAGATATCAGT 888
Query 844 TGAATTTCAACGTATTACTACAAGAGGTTCTAAGAAGCTGCTCTCACCTATTTACAGCCG 903
|||| |||||||||||||||||||| ||||||||||||||||||||| |||| |||||||
Sbjct 889 TGAACTTCAACGTATTACTACAAGAAGTTCTAAGAAGCTGCTCTCACTTATTCACAGCCG 948
Query 904 AGGAAAGGGCATTCTTGGAATCTTTCCCCACTCTTTCAGAGGATAGCCAGAGACTTTTCA 963
| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 949 ATGAAAAGGCATTCTTGGAATCTTTCCCCACACTTTCAGAGGATAGCCAGAGACTTTTCA 1008
Query 964 TCCGGCTTTACACACGAAAAGGACCTTGGTTTAGGCTATCAAATATTTCATACCCTGAGG 1023
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1009 TCCGGCTTTACACACGAAAAGGACCTTGGTTTAGGCTATCAAATATATCATACCCTGAGG 1068
Query 1024 TGTCTGATTCTCTTCAAGCCCTGAAGGATCTAACAGTCAGGGGATTTATGAGTTCAGTGA 1083
|| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1069 TGACTGATTCTCTTCAAGCCCTGAAGGATCTGACAGTCAGGGGATTTATGAGTTCAGTGA 1128
Query 1084 AGGACGCAAGTGAACTAGATCACCAAAAGATGAAGGAGATCACAGAGTTGCTTAACGTCA 1143
||||||||| |||||| ||| |||||||||||||||| ||||||||||||||||||||||
Sbjct 1129 AGGACGCAAATGAACTCGATAACCAAAAGATGAAGGAAATCACAGAGTTGCTTAACGTCA 1188
Query 1144 CTGAACTCCGTGATATCTTATCTATTAACAAGGTGTTCAGTTTCGGCTCAAGAAAGAGAG 1203
||||||| ||||||||||||||||| ||||||||||||||| | ||||||||||||||
Sbjct 1189 CTGAACTTCGTGATATCTTATCTATGAACAAGGTGTTCAGTCGCACCTCAAGAAAGAGAG 1248
Query 1204 ACCTTATTAATTCACTTTGTTCTTGTTACAACGATGGAACGAGAATAAATCTAGCAACAA 1263
||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1249 ACCTTATTAATTCTCTTTGTTCTTGTTACAATGATGGAACGAGAATAAATCTAGCAACAG 1308
Query 1264 TAATTCTAGAAAGAACAGGACTATGTGCTAAGATATCCAGTACTGCAGAATCTCTCATAT 1323
|||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||
Sbjct 1309 TAATTCTAGAAAGAACAGGACTATGTGCTAAGGTATCAAGTACAGCAGAATCTCTCATAT 1368
Query 1324 GGCGCGTTGAGAGGCTTTTCTTTCTCAATGGGGAGCAAGATCTATCGTCTTTTGTTCTGC 1383
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1369 GGCGCGTTGAGAGGCTTTTCTTCCTCAATGGGGAGCAAGATCTATCGTCTTTTGTTCTGC 1428
Query 1384 AGGATCTTGGTATTATCAAATACCCAACTTACAAATGCATTGACTCAGAGCAAATATTTT 1443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1429 TGGATCTTGGTATTATCAAATACCCAACTTACAAATGCATTGACTCAGAGCAAATATTCT 1488
Query 1444 CGAATCGGACTAAGCTTTTAGCATATGAAGAGGCCATTGAAGTGGCTCAGTTGATGGATG 1503
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1489 CGAATCGGACCAAGCTTTTAGCATATGAAGAGGCCATTGAAGTGGCTCAGTTGATGGATG 1548
Query 1504 AGTCTCTTGACAATGAGGATTCTCGGACAGTGTTGAAATGTATCATGATTGCTGAAACCC 1563
|||||||||||||||||||| ||| ||||||||||||||| || || |||||||||||||
Sbjct 1549 AGTCTCTTGACAATGAGGATCCTCAGACAGTGTTGAAATGCATTATAATTGCTGAAACCC 1608
Query 1564 GCATATCCAGTTCTTCTTTGGATTCTGCTCACGCTGCTGGATTTAATCGCTTTACAGCTT 1623
||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1609 GCATATCCAGTTCCTCTTTGGATTCTGCTCACGCTGCTGCATTTAATCGCTTTACAGCTC 1668
Query 1624 CATGGGTTTACTCAAAGGTGGTTCTCTTAGGAGTTTCCTTTTTTGAGAACCACAAAAGGC 1683
|||||||| ||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 1669 CATGGGTTAACTCAAAGGTGGTTCTCTTAGGAGTTTCCTTTTTTGAGAACCAGAAGAGGT 1728
Query 1684 ATATTATCTTTGTCTTTTTGCCTGTTGTGATTTTTTATCTACTGAGGCGATTGCTCAGCT 1743
| | | | | || ||| | || ||||||||||||||||||||||
Sbjct 1729 ACA--ACC---GA------GCA-GTT-T-AT-------CTACTGAGGCGATTGCTCAGCT 1767
Query 1744 GTTTTAATTGTGATGGGAGACGAGGATACTGGACAGTCAGGTTATCAACGGATTTGGAGC 1803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1768 GTTTTAATTGTGATGGGAGACGAGGATACTGGACAGTCAGGTTATCAACGGATTTGGAGC 1827
Query 1804 ACATGGGACGTCCAAATGAGAGCCTTACAGTAGCAGAGCAGGGACTATTGGATCCTTGGG 1863
|||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 1828 ACATGGGACGTCCAAATGAGAGTCTTACAGTTGCAGAGCAGGGACTATTGGATCCTTGGG 1887
Query 1864 TGCGTGCTGGTTCAAGGGTAGCTTTGCAAAGGCGCATTCTTCGTTTGGCAAAACCTCCAA 1923
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1888 TGCGTGCTGGTTCAAGGGTAGCTTTGCAAAGGCGGATTCTTCGTTTGGCAAAACCTCCAA 1947
Query 1924 GACGCTGGAAAACTCCCACTTTTTCAAATCTCGTCGAAAACAAGATCCCCGAGGTTACTA 1983
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1948 GACGCTGGAAAACTCCCACTTTTTCAAATCTCGTCGACAACAAGATCCCCGAGGTTACTA 2007
Query 1984 TTCAAGGGAGATCACTGAATTGTGAAGTTGGCATGAAAAACAGGTTTTATGGAGAAGACG 2043
||||||||||||||||||| |||||||||||||| ||||| ||||||||||||||||| |
Sbjct 2008 TTCAAGGGAGATCACTGAACTGTGAAGTTGGCATAAAAAATAGGTTTTATGGAGAAGATG 2067
Query 2044 GAGAACAATGTGGAGTCGAGCAGCTTGCATTGCAGTATTACAGTGGAGAAGGAGGA---T 2100
|||||||||||||||| |||||||| |||||||||||||||||||||||||||||| |
Sbjct 2068 GAGAACAATGTGGAGTGGAGCAGCTCGCATTGCAGTATTACAGTGGAGAAGGAGGAGGAT 2127
Query 2101 GGCAAGGAATTCATACAGAGAGTAGCATCTGGTTAACGATTTTCGGGCTTCTCATGTGGG 2160
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2128 GGCAAGGAATTCATACAGAGAGTAGTATCTGGTTAACGATTTTCGGGCTTCTCATGTGGG 2187
Query 2161 ACATTCTATTTTCCGATGTACCGGGTGTTTTCCAAACCCGATTCCAGACTGCTCCATTGG 2220
| ||||||||||||||||| || || |||||||||||||||||||||||||||||| |||
Sbjct 2188 ATATTCTATTTTCCGATGTCCCTGGCGTTTTCCAAACCCGATTCCAGACTGCTCCACTGG 2247
Query 2221 ACTTAGAGACTGAATCCTTCTATCTAACCAGGAAAGAAACAATAGAGTCTCAGCTCGAAA 2280
|||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 2248 ACTTAGAGACTGAATCCTTCTATCTAACCAGGAAGGAAACAATAGAATCTCAGCTCGAAA 2307
Query 2281 AAGTTGCGAACGGAATGGCTGAAGAAATACTAATCATATCATATGAAACACACCGTGGAA 2340
|||| || || ||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2308 AAGTCGCAAATGGAATGGCTGAAGAAATACTAATCATATCATATGAAACACAACGTGGAA 2367
Query 2341 CAGCATGCAGAGGAGTGGCTTGGGATCGATTTTTGTTAGAGGAATTGAGAGCAGCAGTGG 2400
|||| |||||||||||||||||||| || |||| |||||||||| |||||||||||||||
Sbjct 2368 CAGCGTGCAGAGGAGTGGCTTGGGAGCGGTTTTCGTTAGAGGAACTGAGAGCAGCAGTGG 2427
Query 2401 CTTGTGTTGGAGGTGTGTGTATAGCATCGCTGTGCCGGCATTTAGCTCAAGACTATAGGA 2460
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2428 CTTGTGTTGGAGGTATGTGTATAGCATCGCTGTGCCGGCATTTAGCTCAAGACTATAGGA 2487
Query 2461 GCTGGTGCAGTGGAATGCCTGATCTACTGCTATGGCGGTTCAAGGAGAATGGTTATGAAG 2520
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 2488 GCTGGTGCAGTGGAATGCCTGATCTACTGGTATGGCGGTTCAAGGAGAATGGTTATGAAG 2547
Query 2521 GTGAAGCTAAGCTTGTGGAAGTTAAATCAGAGAGAGATAGGTTATCAGAACAACAAAGAG 2580
|||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||||
Sbjct 2548 GTGAAGCTAAGCTTGTGGAAGTGAAATCAGAGAAAGATAGGTTATCAGAACAGCAAAGAG 2607
Query 2581 CTTGGCTTCTACTTCTAATGGATTCAGGCTTTAATGTTGAGATTTGCAAAGTGAGACCTG 2640
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2608 CTTGGCTTCTACTTCTAATGGATTCAGGCTTTAATGTTGAGATTTGCAAAGTAAGACCTG 2667
Query 2641 CTTCTTTAACTAAAACTTAATTATACAAATTAAAAGGATTTGTACAATAACACACGATTT 2700
||||||||| |||||||||||||| ||||||||||||| | | | ||||||||||
Sbjct 2668 CTTCTTTAATTAAAACTTAATTATCCAAATTAAAAGGA---G-A-A----CACACGATTT 2718
Query 2701 GTTGGATAGTTACTGtttttt-tttttttCTTTATGCAAAAGGGATTTGTTTTTT 2754
|| ||||||||||| |||||| |||||||||||||||||||| ||||||||||||
Sbjct 2719 GTCGGATAGTTACT-TTTTTTCTTTTTTTCTTTATGCAAAAGTGATTTGTTTTTT 2772
Score = 448 bits (242), Expect = 2e-124
Identities = 292/316 (92%), Gaps = 4/316 (1%)
Strand=Plus/Plus
Query 1 ATCGGCAGGAAATGCTCACCGGACGGGAGAGCTTGCTCCGGTTGATTGGAAAACGCCGGC 60
||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||
Sbjct 1 ATCGGCAGGAAATGCTCACCGGACGGGAGAGTTTGCTCCGGTTGATTGGAAAGCGCCGGC 60
Query 61 GATATCTCCCCAATCGCCACCTTCTTCTCTCCGCTCCTACTCCGAATTCGTTGAATCTCG 120
||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 61 GATTTCTCCCCAATCGCCACCTTCTTCTCTCCGCTCATACTCCGAATTCGTTAAATCTCG 120
Query 121 AGGTCAACGACGATGGCAATCTTATCTCATTAGCCGGAGATGATGGT-ATTCTGTCGGAT 179
|| |||||||| ||||||||||| |||||||||||||||||||| || || | || ||
Sbjct 121 AGTTCAACGACTATGGCAATCTTGTCTCATTAGCCGGAGATGATTGTCGTT-TATCAGAG 179
Query 180 AATCCGGCTCCTCTC-GATGACCCGAGCAAATTCTCTGATGATTTGAGTCTATCCACGAG 238
||||| || || || ||||||||||| ||||||||||||||||||||| ||||||||||
Sbjct 180 GATCCGACTTCT-TCAGATGACCCGAGTAAATTCTCTGATGATTTGAGTTTATCCACGAG 238
Query 239 GAAGAAACGGAGATTAACTCAGACCACTCTTCTTCAGTCAAATTTCTGGTCAGTGCCAAA 298
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 239 GAAGAAACGGAGATTAACTCAGACCACTCTTCTTCAGTCAAGTTTCTTGTCAGTGCCAAA 298
Query 299 ACAATTAGAAGATGGT 314
||||||||||||||||
Sbjct 299 ACAATTAGAAGATGGT 314
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 136805253561
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5