BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473976
Length=1308
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48380.2 | Symbols: RHL1, HYP7 | root hair initiation protei... 911 0.0
> AT1G48380.2 | Symbols: RHL1, HYP7 | root hair initiation protein
root hairless 1 (RHL1) | chr1:17877413-17879270 REVERSE
LENGTH=1452
Length=1452
Score = 911 bits (493), Expect = 0.0
Identities = 688/773 (89%), Gaps = 50/773 (6%)
Strand=Plus/Plus
Query 581 TCAGGCAGAGCAA-ACAGAGTTTGATTTCCAAGGCGGTGCAGGAGGAGCAGCTTCGGTCA 639
|||||||||| || || ||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 679 TCAGGCAGAG-AATACTGAGTTTGATTTCCAAGGCGGTGCTGGAGGAGCAGCTTCGGTGA 737
Query 640 AGAAGCTGGCGACTCCTGAAACTGGTAGCCAACCAACAGAGACAGACTCACCTGAAGTTG 699
|||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 738 AGAAGCTGGCGAGTCCTGAAATTGGTAGCCAACCAACAGAGACAGACTCACCTGAAGTTG 797
Query 700 ACATGGAGGATGTTTTGTCTGAGGATGGAGAATTCCTGGACGATAAGATTGAACT-A-A- 756
||| |||||||||||||||||||||||||||||| ||||||||||||| || | | |
Sbjct 798 ACAACGAGGATGTTTTGTCTGAGGATGGAGAATTCTTGGACGATAAGATCCAAGTAACAC 857
Query 757 CACCAG-TCCA--AACA--A-CA--CC-AG----TCC-G---G-CAGTCTCAGAGAAATT 798
|||||| || | |||| | || || || ||| | | ||||||||||||||||
Sbjct 858 CACCAGTTCAATTAACACCACCAGTCCAAGTAACTCCGGTCCGACAGTCTCAGAGAAATT 917
Query 799 CTGGGAAGAAATTCAACTTTGCAGAAACTTCCGCAGAGGACTCCTCTGGTGAAAGTGAAG 858
|||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 918 CTGGGAAGAAATTCAACTTTGCAGAAACTTCCTCAGAGGCCTCCTCTGGTGAAAGTGAAG 977
Query 859 GCAATACATCTGATGAAGATGAGAAACCTATGTTGGAACCTGAATCTTCAACAAGAGGTC 918
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 978 GCAATACATCTGATGAAGATGAGAAACCTCTGTTGGAACCTGAATCTTCAACAAGAAGTC 1037
Query 919 GTGAGGAATCTCAAGATGGTA-T--TAC-A--GCATCAGCAAGCAAGTTGCCT-ACAGAA 971
||||||||||||||||||||| | || | ||||| ||||||||||||||| | ||||
Sbjct 1038 GTGAGGAATCTCAAGATGGTAATGGTATTACTGCATCTGCAAGCAAGTTGCCTGA-AGAA 1096
Query 972 CTTCCAGCAAGAAAGG-AAAAACCAAAGAGCAAAGACAGTAAGCTCGTTCAAGCTACTGT 1030
||||| || | ||||| |||||| |||||||||||||||||||||||||||||||||| |
Sbjct 1097 CTTCCGGCTA-AAAGGGAAAAACTAAAGAGCAAAGACAGTAAGCTCGTTCAAGCTACTTT 1155
Query 1031 GTCTAACCTTTTCAAGAAAGCTGAGGAGAAAACAGCTGGAACGTCCAAGGCGAAATCATC 1090
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1156 GTCTAACCTTTTCAAGAAAGCTGAGGAGAAAACAGCTGGAACTTCCAAGGCTAAATCATC 1215
Query 1091 TTCAAAAGCTTAA-GAAACTCTTTTCCAGAAGAATATAGAGGTCTGTTGTTTCTTTTGCT 1149
|||||||||||| |||| ||||||||||||||| ||||||||||||||||||||| |||
Sbjct 1216 CTCAAAAGCTTAAAGAAA-TCTTTTCCAGAAGAAAATAGAGGTCTGTTGTTTCTTT-GCT 1273
Query 1150 GTGAGAATGAACAATTTTTAGTTCTTTTAGTTATGTTTGTGTGAGAAATTGCTACAAGA- 1208
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1274 GTGAGAATGAACAGTTTTTAGTTCTTTTAGGTATGTTTGTGTGAGAAATTGCTACAAGAC 1333
Query 1209 T--TG-AT-------G---TTGGATAATGTATTCATCATGCTTAATCGATAGTTTGTGTT 1255
| || || | ||||||||||||||||| ||||||| |||||||||||||||
Sbjct 1334 TGATGTATTCATCATGCAGTTGGATAATGTATTCATTATGCTTATTCGATAGTTTGTGTT 1393
Query 1256 CCCCGAGCTATGTATAAATCATCTCTGCTCATTTTAATATAACAAACCGTCTC 1308
| ||||||||||||||||||||||||||| |||||||| ||||||| |||||
Sbjct 1394 CATCGAGCTATGTATAAATCATCTCTGCTCTTTTTAATACAACAAACTGTCTC 1446
Score = 885 bits (479), Expect = 0.0
Identities = 534/561 (95%), Gaps = 1/561 (0%)
Strand=Plus/Plus
Query 25 AGAAGAATTTAGAGGGAGTAGAAGCAGAAGCATTAGTAATGGTACGAGCTTCATCGTCGA 84
|||| || |||||| ||||||||| || || | ||||||||||||||||||||||||||
Sbjct 31 AGAA-AAATTAGAGAGAGTAGAAGAAGCAGAAGCAGTAATGGTACGAGCTTCATCGTCGA 89
Query 85 AGAAAGGTGGATCAAAAGGAGGAGATAAAGACGATGCAGAGTCAAAACAGAGGAAGAGAT 144
||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 90 AGAAAGGAGGATCAAAAGGAGGAGACAAAGACGACGCAGAGTCAAAACAGAGGAAGAGAT 149
Query 145 TGAAAACCCTAGCTCTCCATAACCAATTGCTCTCTGATTCTTCGGCGAAATCTCTTTCCT 204
| ||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||
Sbjct 150 TAAAAACCCTAGCTCTCGATAACCAATTGCTCTCTGATTCTCCGGCGAAATCTCATTCCT 209
Query 205 CTCTCAAACCTTCAAAGCAAGTTCTCAAACACCATGGCACCGACATCATCCGCAAATCTC 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 210 CTCTCAAACCTTCAAAGCAAGTTCTCAAACACCATGGCACCGACATCATCCGCAAATCTC 269
Query 265 AGCGCAAGAATCGCTTTCTCTTCTCCTTCCCTGGTCTTCTCGCTCCTATCTCCGGCGCTA 324
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 270 AGCGCAAGAATCGCTTTCTCTTCTCCTTCCCTGGTCTTCTCGCTCCTATCTCCGCCGCTA 329
Query 325 CTATCGGCGATCTCGATCGATTGTCCACTAAAAACCCTGTCCTCTACCTCAATTTCCCCC 384
| |||||||||||||||||||| || || |||||||||||||||||||| |||||||| |
Sbjct 330 CCATCGGCGATCTCGATCGATTATCTACCAAAAACCCTGTCCTCTACCTTAATTTCCCAC 389
Query 385 AGGGTCGTATGAAACTTTTTGGAACGATTTTGTATCCCAAGAACAGATACTTGACTCTTC 444
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 390 AGGGTCGTATGAAACTTTTTGGAACGATTTTGTATCCGAAGAACAGATACTTGACTCTTC 449
Query 445 AATTCTCCAGAGGAGGCAAAAATGTCTTGTGTGATGACTATTTTGATAACATGATTGTGT 504
||||||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 450 AATTCTCTAGAGGAGGCAAAAATGTCTTATGTGATGATTATTTTGATAACATGATTGTGT 509
Query 505 TCTCTGAGTCATGGTGGATTGGGACAAAAGAGGAGAATCCTGAAGAAGCTCGTCTTGATT 564
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 510 TCTCTGAGTCATGGTGGATTGGGACAAAAGAGGAGAATCCAGAAGAAGCTCGTCTTGATT 569
Query 565 TCCCTAAAGAACTAGCTCAGG 585
|||||||||||||||||||||
Sbjct 570 TCCCTAAAGAACTAGCTCAGG 590
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64357098690
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5