BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473983
Length=639
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48440.1 | Symbols: | B-cell receptor-associated 31-like | ... 913 0.0
> AT1G48440.1 | Symbols: | B-cell receptor-associated 31-like
| chr1:17906987-17908534 FORWARD LENGTH=685
Length=685
Score = 913 bits (494), Expect = 0.0
Identities = 579/618 (94%), Gaps = 13/618 (2%)
Strand=Plus/Plus
Query 2 GTTCGTCTATTATTATTCTTCGTCTACTTCACACGAAATTCAagagagagagagagagag 61
||||||||||||||||||||||||||||||||||| || | ||||| ||||||||||||
Sbjct 8 GTTCGTCTATTATTATTCTTCGTCTACTTCACACGGAA-T--AGAGATAGAGAGAGAGAG 64
Query 62 agaTCCAGAAGAAGACGAACAACAATGGCGTTGCAATGGCTGATTCTGA-CGTATGTGGT 120
|||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 65 AGATCCAGAAAAAGACGAACAACAATGGCGTTGCAATGGCTGATTCT-ATCGTATGTGGT 123
Query 121 GGCCGCCGAAGTAGTAATCACCCTCGTGTTGACTCTTCCTTACCCTATGCTGCTTAAGAA 180
||||| |||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 124 GGCCGTCGAAGTAGTAATCACCCTCGTGTTGACTCTCCCTTACCCTATGCTTCTTAAGAA 183
Query 181 ACGTGTCGTACAACTTGTCTCGTTGATTCTCCAACCTGCTGCTTCCATCGTCGCTTTCGC 240
|||||| || || |||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 184 ACGTGTAGTTCAGCTTGTCTCATTGATTCTCCAACCTGCTGCTTCCATCGTCGCCTTCGC 243
Query 241 CGGATTTCAGCTCCTCGATATTTACTGGAAAGCTGAGCATAGACTATCTTGTTCATCTGA 300
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 244 CGGATTTCAGCTCCTCGATATTTACTGGAAGGCTGAGCATAGACTATCTTGTTCATCTGA 303
Query 301 GGTATGCACTGCTACAGAACGTGATCGCTACGAGAAATCTATCTACAAGGCTCAGAGGAA 360
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 GGTTTGCACTGCTACAGAACGTGATCGCTACGAGAAATCTATCTACAAGGCTCAGAGGAA 363
Query 361 TGTGGTTCTGTGCGCTGCAGGAATTCTTCTCTACTGGTGCATCTACCGCATCTGTAAGTA 420
|||||||| ||||||||||||||||| |||||||||||||||||||||||||| || ||
Sbjct 364 CGTGGTTCTATGCGCTGCAGGAATTCTACTCTACTGGTGCATCTACCGCATCTGCAAATA 423
Query 421 CAACAAGGACCTGGAGCGCTTGGAGGCAACGGAGAAGAGATACAAGGAAGAGTAATAAAT 480
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct 424 CAACAAAGACCTGGAGCGCTTGGAGGCAACGGAGAAGAGATTCAAGGAAGAGTAATAA-T 482
Query 481 -TTCACGAGTATAGGGAGTTGGTTCCTCAAAACCATTATTATATAAGTAAAGCttttttt 539
|||||||||||||||||||||||||||||||||||||| ||| | ||||||||||||||
Sbjct 483 CTTCACGAGTATAGGGAGTTGGTTCCTCAAAACCATTAT-ATA-A-GTAAAGCTTTTTTT 539
Query 540 tATTGCATTTTTACATTCATA-TATTACTGAACCTGAACGAAACTATGAGTATCGTGAAC 598
|||||||||||||| ||| || ||||| || ||||||| ||||||| |||||||||||||
Sbjct 540 TATTGCATTTTTACGTTC-TAATATTATTGGACCTGAATGAAACTAAGAGTATCGTGAAC 598
Query 599 ACCCTT-GCACACTATAT 615
| |||| |||||||||||
Sbjct 599 AGCCTTTGCACACTATAT 616
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30843766258
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5