BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473985
Length=1475
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48450.1 | Symbols: | Protein of unknown function (DUF760) ... 2119 0.0
> AT1G48450.1 | Symbols: | Protein of unknown function (DUF760)
| chr1:17908503-17910450 REVERSE LENGTH=1620
Length=1620
Score = 2119 bits (1147), Expect = 0.0
Identities = 1373/1480 (93%), Gaps = 24/1480 (2%)
Strand=Plus/Plus
Query 1 CTAGGATTCTTCTTCCTTTCTCCTTTCTCTCTGGCCAAAGTTGCGA-TTTTTGCTTCTCT 59
||||| ||||||||| ||||||| || ||||||||||||||| ||| ||||||||||||
Sbjct 36 CTAGGTTTCTTCTTCATTTCTCC-TT-TCTCTGGCCAAAGTTCCGACTTTTTGCTTCTCC 93
Query 60 CGGAGGCTAATCATGGACGCCGTGGCGACGAATTTGGTTCAATCTTCAGT-CTTACTACG 118
| |||||||||||||||||| |||||| |||||||| ||||||| || | |||||| ||
Sbjct 94 CAGAGGCTAATCATGGACGCTGTGGCGGCGAATTTGTTTCAATC-TCCTTCCTTACTGCG 152
Query 119 TCAATCTTCCGAAAGGTCGATACTTTT-AACGCCCAACTGTCCTGGCTTCATGCG-ATTC 176
|||| |||||||||||| |||| |||| |||||||||||||||||||||||||| |||
Sbjct 153 TCAAACTTCCGAAAGGTTGATA-TTTTCGACGCCCAACTGTCCTGGCTTCATGCGAATT- 210
Query 177 GGCACCGGACCTCAATTTCGTCTCAAAGTACGTCTTCAAAACTCTTCTCTTAAATTCTCG 236
|| |||||||||||||||||||| || | ||||||||||||||||||||||||
Sbjct 211 AGCTCCGGACCTCAATTTCGTCTC--AG-A------CAAAACTCTTCTCTTAAATTCTCG 261
Query 237 AGACCATTGCAAAGTGGAACAACTTGTGCTAAATCTCGGAGAAGCTTTGTGGTTAAAGCT 296
|||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 262 AGACCATTTCAAAGCGGAACAACTTGTGTTAAATCTCGGAGAAGCTTTGTGGTTAAAGCT 321
Query 297 TCAGCTTCTGGTGATGCGTCAACTGATTCAATCGCGCCACTTCAGTTGAAGTCTCCTGTT 356
||||||||||||||||| ||||| || ||||||||||| ||||||||||||||||||| |
Sbjct 322 TCAGCTTCTGGTGATGCTTCAACAGAATCAATCGCGCCGCTTCAGTTGAAGTCTCCTG-T 380
Query 357 GGG-CAGTTTCTGTCACAGATATTAGTGAGCCATCCTCATCTTGTTCCAGCAGCTGTTGA 415
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 381 GGGACAGTTTCTGTCACAGATATTAGTGAGCCATCCTCATCTTGTTCCAGCAGCTGTTGA 440
Query 416 ACAGCAGCTTGAACAGCTCCAAATCGATCGAGACGCTGAAGAACAGAGCAAAGATGCATC 475
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 441 ACAGCAGCTTGAACAGCTCCAAATTGATCGAGACGCTGAAGAACAGAGTAAAGATGCATC 500
Query 476 CTCTGTCCCTGGAACAGACATTGTTCTCTACAGGAGAATTGCTGAAGTTAAGGAGAAAGA 535
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 501 CTCTGTCCTTGGAACAGACATTGTTCTCTACAGGAGAATTGCTGAAGTTAAGGAGAAAGA 560
Query 536 GAGAAGAAGGGCTTTGGAAGAGATTTTATATGCGTTAGTGGTTCAGAAGTTCATGGACGC 595
|||||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||
Sbjct 561 GAGAAGAAGGGCCTTGGAAGAGATTTTGTATGCGTTAGTGGTTCAGAAGTTCATGGATGC 620
Query 596 TAATGTTTCACTTGTACCATCCATAAGCTCATCGTTTGCAGATCCATCTGGTCGAGTTGA 655
||||||| |||||||||||||||||| ||| || | ||| ||||||||||||||||||||
Sbjct 621 TAATGTTACACTTGTACCATCCATAACCTCTTCATCTGCGGATCCATCTGGTCGAGTTGA 680
Query 656 TACTTGGCCGACTCTAGATGGGGAACTTGAGAGACTTCACTCGCCTGAGGTTTATGAGAT 715
||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 681 TACTTGGCCAACTCTAGATGGGGAACTTGAGAGACTTCACTCGCCTGAAGTTTATGAGAT 740
Query 716 GATTCAGAATCATCTTTCCATCATTCTTAAGAACCGCACTGATGATCTGACAGCAGTTGC 775
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 741 GATTCAGAATCATCTTTCCATCATTCTTAAAAACCGCACTGATGATCTGACAGCAGTTGC 800
Query 776 GCAGATAAGCAAACTTGGAGTTGGACAGGTATATGCTGCTTCCGTGATGTATGGGTATTT 835
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 801 GCAGATAAGCAAACTTGGAGTTGGACAGGTATATGCTGCTTCGGTGATGTATGGGTATTT 860
Query 836 CCTGAAGCGGATTGATCAAAGGTTTCAGCTCGAGAAGACGATGAGGATTCTCCCAGGTGG 895
||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 861 CCTGAAGAGGATCGATCAAAGGTTTCAGCTTGAGAAGACGATGAGGATTCTCCCAGGTGG 920
Query 896 GTCATATGAAGGTGAGACTAGCATTGAGCAAGCAAGCCGAGAAATAGAGAGAAGCTTCTA 955
|||| ||||||||||||||||||||||||||||| ||||||| ||||||||| ||||||
Sbjct 921 GTCAGATGAAGGTGAGACTAGCATTGAGCAAGCAGGCCGAGATGTAGAGAGAAACTTCTA 980
Query 956 TGAAGAAGCGGAAGAGACTTATCAGGCTGTTTCCTCAAACCAAGAGGTTGGTTCGTTTGT 1015
||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 981 TGAAGAAGCAGAAGAGACTTATCAGGCTGTTTCCTCAAACCAAGACGTTGGTTCGTTTGT 1040
Query 1016 GGGAGGAATCAATGCGAGTGGTGGTTTTAGTAGTGATATGAAGCAATCCCGGTTAAAGAC 1075
||||| |||||||| ||||| |||||||| |||||||||||||||||||||||||||||
Sbjct 1041 AGGAGGGATCAATGCCAGTGGCGGTTTTAGCAGTGATATGAAGCAATCCCGGTTAAAGAC 1100
Query 1076 ATACGTTATGTCCTTTGACGGGGAGACACTACAGAGATACGCTACAATAAGATCAAGAGA 1135
|||||||||||||||||| || || || || || || ||||||||||||||||| |||||
Sbjct 1101 ATACGTTATGTCCTTTGATGGAGAAACCCTTCAAAGGTACGCTACAATAAGATCTAGAGA 1160
Query 1136 AGCGGTTGGGATAATTGAGAAGCATACAGAGGCATTGTTTGGGAGGCCAGAGATTGTGAT 1195
| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1161 ATCGGTTGGGATAATTGAGAAGCATACAGAAGCATTGTTTGGGAGGCCAGAGATTGTGAT 1220
Query 1196 AACACCACAAGGCACAATTGACTCTTCGAAGGATGAGCATATAAAGATCAGCTTCAAGGG 1255
||| ||||||||||| ||||| || |||||||| |||||||| |||||||||||||||||
Sbjct 1221 AACGCCACAAGGCACTATTGATTCCTCGAAGGACGAGCATATCAAGATCAGCTTCAAGGG 1280
Query 1256 ATTGAAGAGGCTTGTGTTGGAGGCTGTGACGTTTGGGTCTTTCCTTTGGGACGTGGAGAG 1315
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1281 ATTGAAGAGGCTTGTGTTGGAGGCTGTGACGTTTGGTTCTTTCCTCTGGGACGTGGAGAG 1340
Query 1316 TCATGTAGATTCAAGGTATCACTTCGTACTGAGCTGAAATGGTCTATGTG-TTTGGTGAG 1374
|||||||| |||||||||||||||||||||| ||||||||| || |||| ||| ||||
Sbjct 1341 CCATGTAGACTCAAGGTATCACTTCGTACTGAACTGAAATGGCCTCTGTGGTTTA-TGAG 1399
Query 1375 GATGTGCCAGATTCTTTGAGAGGGTTTGGGGATTTGTTCTTTGTAATATATATGCAACTG 1434
||||||||| |||||||||||||||||||||||||||| |||||||||||| || ||||
Sbjct 1400 GATGTGCCACATTCTTTGAGAGGGTTTGGGGATTTGTTGTTTGTAATATAT--GCGACTG 1457
Query 1435 TGAATTGACCAACTAATATCAATACCCATTTTAAGGTAAT 1474
|||| |||||||||||||||||||||||||||| ||||||
Sbjct 1458 TGAACTGACCAACTAATATCAATACCCATTTTATGGTAAT 1497
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 72740589705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5