BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473986
Length=1145
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48460.1 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 1548 0.0
> AT1G48460.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: chloroplast envelope; EXPRESSED IN: 21 plant
structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis
thaliana protein match is: unknown protein (TAIR:AT5G63040.1);
Has 60 Blast hits to 60 proteins in 14 species: Archae
- 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 60;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr1:17911346-17913300
FORWARD LENGTH=1297
Length=1297
Score = 1548 bits (838), Expect = 0.0
Identities = 1039/1131 (92%), Gaps = 34/1131 (3%)
Strand=Plus/Plus
Query 20 AAAAACCCTAAACGAAAATGGAATCGAAAGCAATTTGCTTAGGGTTTCTTCCTCCAAGAC 79
||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 108 AAAAACCCT-AACAAAAATGGAATCGAAAGCAATTTGCTTAGGGTTTCTTCCTCCAAGAC 166
Query 80 TTGGATTTTCATCTCCACATTTACTCTCCCGTTC-TCCTTTTC-TCCAGGGTTCTTCGAC 137
|| ||||||||||||||| ||||||||| | ||| ||||| || ||| | |||||| ||
Sbjct 167 TTCGATTTTCATCTCCACGTTTACTCTCTC-TTCCTCCTTCTCCTCCTGC-TTCTTCCAC 224
Query 138 TTTTGCAACGCGTCAGAAACTTGATTCCAGACAAACCCTCCGTTGGAACAAACCGCAATT 197
||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 225 ATTTGCGACGCGTCACAAACTTGATTCCAGACAAACCCTCCTTTGGAACAAACCGCAATT 284
Query 198 GAGCCGAGGTCATGTAGCGTGTTCTTCTAAGCAATCGGG-T-AAGAG-T-A-A-----C- 246
|||||||| || |||||||||||||||| ||||| | | |||| | | | |
Sbjct 285 GAGCCGAGTTCGTGTAGCGTGTTCTTCTTCTCAATCTGACTCAAGACCTGAGAAGAAGCA 344
Query 247 -T---AT--GC-T--CGA-GCT-GAGCTG---T-T-CCGTGGGAAATCAGGTTCTGTTTC 290
| || | | | | ||| |||||| | | ||||||||||||||||||||||||
Sbjct 345 ATCGGATAAGAGTAACTATGCTCGAGCTGAGCTGTTCCGTGGGAAATCAGGTTCTGTTTC 404
Query 291 TTTCAATGGTCTGACTCATCAGCTGGTTGAAGAAAGTAGACTGGTTTCAGCTCCATTTCA 350
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 405 TTTCAATGGTCTGACTCATCAGCTGGTTGAAGAAAGTAAACTGGTTTCAGCTCCGTTTCA 464
Query 351 AGAAGAGAAGGGTTCTTTCTTGTGGGTTTTGGCTCCTGTTGTCTTGATTTCTTCATTGAT 410
||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |||||
Sbjct 465 AGAAGAGAAAGGTTCTTTCTTGTGGGTTTTGGCTCCTGTTGTTTTGATTTCTTCGTTGAT 524
Query 411 TCTTCCTCAGTTCTTTCTTAGTGGTGCCATTGAAGCTTCTTTCAAAAACGACACTGTTGC 470
|||||||||||||||||| |||||| |||||||||| | ||||||||||||||||||||
Sbjct 525 TCTTCCTCAGTTCTTTCTAAGTGGTATCATTGAAGCTACCTTCAAAAACGACACTGTTGC 584
Query 471 TGAAATTGTTACTTCTTTTTGCTTTGAGACGGTGTTTTATGCTGGTCTTGCGATATTCCT 530
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 585 TGAAATTGTTACTTCTTTTTGCTTTGAGACGGTGTTTTATGCTGGTCTTGCGATATTCCT 644
Query 531 GTCTGTGACCGACCGAGTGCAGAGGCCGTACTTAGACTTCAGCTCCAAGAGATGGGGTCT 590
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 645 GTCTGTGACTGACCGAGTGCAGAGGCCGTACTTAGACTTCAGCTCCAAGAGATGGGGTCT 704
Query 591 GATCACTGGCCTGAGGGGATATCTTACGTCTGCATTTCTCACGATGGGTTTGAAAGTTGT 650
||||||||| ||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 705 GATCACTGGACTGAGGGGATACCTTACGTCTGCATTCCTCACGATGGGTTTAAAAGTTGT 764
Query 651 AGTTCCCGTATTTGCTGTATACATGACTTGGCCAGCTCTCGGAATAGATGCGTTGATTGC 710
|||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||
Sbjct 765 AGTTCCCGTATTTGCTGTTTACATGACTTGGCCAGCTCTTGGAATAGATGCTTTGATTGC 824
Query 711 AGTGCTTCCTTTCTTAGTTGGATGTGCAGTTCAACGAGTTTTTGAGGCTCGGCTTGAAAG 770
||||||||||||||| ||||| |||||||||||| ||||||| |||||||||||||||||
Sbjct 825 AGTGCTTCCTTTCTTGGTTGGCTGTGCAGTTCAAAGAGTTTTCGAGGCTCGGCTTGAAAG 884
Query 771 ACGCGGCTCATCCTGTTGGCCCATTGTTCCAATAGTCTTTGAGGTGTATAGGTTGTATCA 830
||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 885 ACGTGGCTCATCCTGTTGGCCCATTGTTCCAATAGTCTTTGAGGTGTATAGGCTGTATCA 944
Query 831 AGTGACAAGAGCAGCGACATTTGTTCAGAGGCTGATGTTTATGATGAAAGATGCGGCAAC 890
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 945 GGTGACAAGAGCAGCGACTTTTGTTCAGAGGCTGATGTTTATGATGAAAGATGCGGCAAC 1004
Query 891 AACTGCAGAAATTACAGAGCGAGGAGTTGCATTAGTTGGTTTGGTTGTGACTTTGCAGTT 950
||||| ||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1005 GACTGCTGAAATAACAGAGCGAGGAGTTGCACTAGTTGGTTTGGTTGTGACTTTGCAGTT 1064
Query 951 TTTAGCTGTTATGTGTCTCTGGTCGTTTATCACTTTTCTTATGCGCCTCTTTCCTTCTAG 1010
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 TCTAGCTGTTATGTGTCTCTGGTCGTTTATCACTTTTCTTATGCGCCTCTTTCCTTCTAG 1124
Query 1011 ACCTGTAGGTGAAAACTACTAAAATCTCAGTGTTTAGTGACTGTTAGATGTAGCCAAATC 1070
||||||||||||||||||||| | |||||||||||||||| |||||||||||||||||||
Sbjct 1125 ACCTGTAGGTGAAAACTACTAGA-TCTCAGTGTTTAGTGATTGTTAGATGTAGCCAAATC 1183
Query 1071 CCATCGGGTTTTGTTTTGTGTCTGTGTTCATTTCAGGAGTAATGAGTTGTA 1121
||||||| ||||||||||| |||||||||||||||| |||||||| |||||
Sbjct 1184 CCATCGG-TTTTGTTTTGTTTCTGTGTTCATTTCAGTAGTAATGAATTGTA 1233
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56174409855
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5