BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473989 Length=1244 Score E Sequences producing significant alignments: (Bits) Value AT1G48510.1 | Symbols: | Surfeit locus 1 cytochrome c oxidase ... 1574 0.0 > AT1G48510.1 | Symbols: | Surfeit locus 1 cytochrome c oxidase biogenesis protein | chr1:17934889-17936915 FORWARD LENGTH=1419 Length=1419 Score = 1574 bits (852), Expect = 0.0 Identities = 1053/1149 (92%), Gaps = 17/1149 (1%) Strand=Plus/Plus Query 1 ATGACAAAACTCGTTTCTAAGA-CTTTAACGAGGTTGATCTCTCAAAGTCAGTACATGTC 59 ||||||||||||||||| |||| ||||| ||||||||| |||||||||||||||||||| Sbjct 1 ATGACAAAACTCGTTTCCAAGATATTTAA-GAGGTTGATTTCTCAAAGTCAGTACATGTC 59 Query 60 TTCTTCTACTACTAGCAATCT-CC--CTGC-T-----ACTTCCAATCTTGAGACCCAATT 110 ||||||||||||||||||||| || |||| | |||||||||||||||| |||||| Sbjct 60 TTCTTCTACTACTAGCAATCTCCCTGCTGCTTCACAAACTTCCAATCTTGAGAGCCAATT 119 Query 111 GCTTTCTTCAGTTCCACCACCCGCAAAGAAGAAAAGAGGGTCAGCGTTGTTATGGTACTT 170 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 120 GCTTTCTTCAGCTCCACCACCCGCAAAGAAGAAAAGAGGGTCAGCGTTGTTATGGTACTT 179 Query 171 AGTTGGATTCACTACTTATGGTCTCGGTGAGACGTATAAGTTCCTACAAACAGATTTGAA 230 |||||||||||||||||||||||||||||||||||||||||||||||||||| | || | Sbjct 180 AGTTGGATTCACTACTTATGGTCTCGGTGAGACGTATAAGTTCCTACAAACACAAGTGGA 239 Query 231 ACATCTTGATT-TCAGACGACAATGCTTGGAAACGAAACCAATGAAGCTCAATACAATGA 289 ||||||||||| | ||| |||||||||||||| ||||||||||||||| ||||||| || Sbjct 240 ACATCTTGATTCT-AGAAAACAATGCTTGGAAATGAAACCAATGAAGCTGAATACAACGA 298 Query 290 A-GAATGTGGATGAGTTAGGATTTCGACGGGTGATATGCAAAGGCGTTTTCGATGAACAA 348 | || | |||||| ||||||||||||||||||| ||||||||||| |||||||||| ||| Sbjct 299 AAGATT-TGGATGGGTTAGGATTTCGACGGGTGGTATGCAAAGGCATTTTCGATGAGCAA 357 Query 349 AGATCGATCTATGTGGGTCCAAAGCCTAGATCCATGTCCAAAGGTTCTGAAAATGGCTTC 408 |||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||| Sbjct 358 AGATCGATCTATGTGGGTCCAAAGCCTAGATCCATGTCTAAAAGTTCTGAAATTGGCTTT 417 Query 409 TATGTCATTACACCTCTTTTGCCAATCCCTAATGAACCAAATAGTATGAAGTCCCCTATT 468 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 418 TATGTCATTACACCTCTTTTGCCAATCCCTAATGAACCTAATAGTATGAAGTCCCCTATT 477 Query 469 CTAGTAAACCGCGGATGGGTTCCTTCAGATTGGAAAGAAAAGTCTCTAGAATCTCTAGGT 528 |||||||| ||||||||||||||||| |||||||||||||| |||||||||||||||||| Sbjct 478 CTAGTAAATCGCGGATGGGTTCCTTCGGATTGGAAAGAAAATTCTCTAGAATCTCTAGGT 537 Query 529 ACCGGTGTTGTCGTTGCTGCTGCAAATGAGGCTAGAAAATCTAATAAAATACTCTCCTCT 588 || |||| | | |||||||||||||| ||| | |||||| |||||||| | ||||||||| Sbjct 538 ACTGGTGGTCTTGTTGCTGCTGCAAAAGAGTCAAGAAAAGCTAATAAACTTCTCTCCTCT 597 Query 589 CAACAAAATCTCTTGTCGAAGTTCTGGTGCAAGTTTAACAACCCAACAATTGCTGAGGAT 648 ||||||| |||||||||||||||||||| |||||| |||||||||| |||| |||||| Sbjct 598 CAACAAAGTCTCTTGTCGAAGTTCTGGTACAAGTTGAACAACCCAATGATTGTTGAGGAC 657 Query 649 CAAGTCTCTGGGGCTATGCATGTGGAAGTGGTTGGTGTAATTAGGAAAAGTGAAACTCCA 708 ||||||||| |||||||||||||||||||||| |||||| |||||||||||||||||||| Sbjct 658 CAAGTCTCTAGGGCTATGCATGTGGAAGTGGTGGGTGTAGTTAGGAAAAGTGAAACTCCA 717 Query 709 GGCATATATACTCTAGTAAATTATCCAAGTTCGCTTGCGTGGTTCTACCTTGACGTTCCT 768 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 718 GGCATATATACTCTAGTAAATTATCCAAGTTCGCTTGCGTGGTTCTACCTTGACGTTCCT 777 Query 769 AAACTGGCTCAAGCAATGGGATTTAGTGAGGACACAATGTATATAGAGAATATTTACAAA 828 ||||| |||| ||| ||||| ||| |||||||||||||||||||||||| || |||| | Sbjct 778 AAACTAGCTCTAGCCATGGGGTTTGGTGAGGACACAATGTATATAGAGAGTACGTACACA 837 Query 829 GATATGGATGAAAGTAGACCATATCCAGCTCCGAGAGACGTTGAGAACTTGATTCGTAGT 888 |||||||||||||||||| | ||||||| ||| ||||||||||||||||||| ||||||| Sbjct 838 GATATGGATGAAAGTAGAACTTATCCAGTTCCAAGAGACGTTGAGAACTTGACTCGTAGT 897 Query 889 AAGGATATACCACTGGACTATCACTTATACACAGTTTTATGGCATTGGAGCTCCCTGACT 948 |||||||||||||||||||||||||| ||||||||||| ||||| ||||| ||||||||| Sbjct 898 AAGGATATACCACTGGACTATCACTTGTACACAGTTTTGTGGCACTGGAGTTCCCTGACT 957 Query 949 TGCTTTATTAAGGCGTCATCGATTTTAATGCGAAAATTTACAAAATCTGATCCTGTTGGT 1008 ||||||||||||||||| |||||||||||||||| ||| ||||||||||||||| ||||| Sbjct 958 TGCTTTATTAAGGCGTCTTCGATTTTAATGCGAAGATTAACAAAATCTGATCCTATTGGT 1017 Query 1009 ATTGAGCCAATATTGATTCCGATTTGTATTCTATTTTTTATATGTACCAAGATATACAGT 1068 | ||||||||||||||||| |||| ||||| |||||||||||||||||||||||||| Sbjct 1018 GTAGAGCCAATATTGATTCCAATTTCCATTCTCGTTTTTATATGTACCAAGATATACAGT 1077 Query 1069 CTTCGTAACTTATTTTGTAAAGTGGACACTATTGGTGTTGGGTGTCTCACTAAACTCGAG 1128 ||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||||| Sbjct 1078 CTTCGTAACTTATTTTGTAAAATAGACACTATTGGTGTTGGGTGTGTCACTAAACTCGA- 1136 Query 1129 C-CAGGAAA 1136 | ||||||| Sbjct 1137 CACAGGAAA 1145 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 61144263810 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5