BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473989
Length=1244
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48510.1 | Symbols: | Surfeit locus 1 cytochrome c oxidase ... 1574 0.0
> AT1G48510.1 | Symbols: | Surfeit locus 1 cytochrome c oxidase
biogenesis protein | chr1:17934889-17936915 FORWARD LENGTH=1419
Length=1419
Score = 1574 bits (852), Expect = 0.0
Identities = 1053/1149 (92%), Gaps = 17/1149 (1%)
Strand=Plus/Plus
Query 1 ATGACAAAACTCGTTTCTAAGA-CTTTAACGAGGTTGATCTCTCAAAGTCAGTACATGTC 59
||||||||||||||||| |||| ||||| ||||||||| ||||||||||||||||||||
Sbjct 1 ATGACAAAACTCGTTTCCAAGATATTTAA-GAGGTTGATTTCTCAAAGTCAGTACATGTC 59
Query 60 TTCTTCTACTACTAGCAATCT-CC--CTGC-T-----ACTTCCAATCTTGAGACCCAATT 110
||||||||||||||||||||| || |||| | |||||||||||||||| ||||||
Sbjct 60 TTCTTCTACTACTAGCAATCTCCCTGCTGCTTCACAAACTTCCAATCTTGAGAGCCAATT 119
Query 111 GCTTTCTTCAGTTCCACCACCCGCAAAGAAGAAAAGAGGGTCAGCGTTGTTATGGTACTT 170
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 120 GCTTTCTTCAGCTCCACCACCCGCAAAGAAGAAAAGAGGGTCAGCGTTGTTATGGTACTT 179
Query 171 AGTTGGATTCACTACTTATGGTCTCGGTGAGACGTATAAGTTCCTACAAACAGATTTGAA 230
|||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
Sbjct 180 AGTTGGATTCACTACTTATGGTCTCGGTGAGACGTATAAGTTCCTACAAACACAAGTGGA 239
Query 231 ACATCTTGATT-TCAGACGACAATGCTTGGAAACGAAACCAATGAAGCTCAATACAATGA 289
||||||||||| | ||| |||||||||||||| ||||||||||||||| ||||||| ||
Sbjct 240 ACATCTTGATTCT-AGAAAACAATGCTTGGAAATGAAACCAATGAAGCTGAATACAACGA 298
Query 290 A-GAATGTGGATGAGTTAGGATTTCGACGGGTGATATGCAAAGGCGTTTTCGATGAACAA 348
| || | |||||| ||||||||||||||||||| ||||||||||| |||||||||| |||
Sbjct 299 AAGATT-TGGATGGGTTAGGATTTCGACGGGTGGTATGCAAAGGCATTTTCGATGAGCAA 357
Query 349 AGATCGATCTATGTGGGTCCAAAGCCTAGATCCATGTCCAAAGGTTCTGAAAATGGCTTC 408
|||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||
Sbjct 358 AGATCGATCTATGTGGGTCCAAAGCCTAGATCCATGTCTAAAAGTTCTGAAATTGGCTTT 417
Query 409 TATGTCATTACACCTCTTTTGCCAATCCCTAATGAACCAAATAGTATGAAGTCCCCTATT 468
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 418 TATGTCATTACACCTCTTTTGCCAATCCCTAATGAACCTAATAGTATGAAGTCCCCTATT 477
Query 469 CTAGTAAACCGCGGATGGGTTCCTTCAGATTGGAAAGAAAAGTCTCTAGAATCTCTAGGT 528
|||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 478 CTAGTAAATCGCGGATGGGTTCCTTCGGATTGGAAAGAAAATTCTCTAGAATCTCTAGGT 537
Query 529 ACCGGTGTTGTCGTTGCTGCTGCAAATGAGGCTAGAAAATCTAATAAAATACTCTCCTCT 588
|| |||| | | |||||||||||||| ||| | |||||| |||||||| | |||||||||
Sbjct 538 ACTGGTGGTCTTGTTGCTGCTGCAAAAGAGTCAAGAAAAGCTAATAAACTTCTCTCCTCT 597
Query 589 CAACAAAATCTCTTGTCGAAGTTCTGGTGCAAGTTTAACAACCCAACAATTGCTGAGGAT 648
||||||| |||||||||||||||||||| |||||| |||||||||| |||| ||||||
Sbjct 598 CAACAAAGTCTCTTGTCGAAGTTCTGGTACAAGTTGAACAACCCAATGATTGTTGAGGAC 657
Query 649 CAAGTCTCTGGGGCTATGCATGTGGAAGTGGTTGGTGTAATTAGGAAAAGTGAAACTCCA 708
||||||||| |||||||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 658 CAAGTCTCTAGGGCTATGCATGTGGAAGTGGTGGGTGTAGTTAGGAAAAGTGAAACTCCA 717
Query 709 GGCATATATACTCTAGTAAATTATCCAAGTTCGCTTGCGTGGTTCTACCTTGACGTTCCT 768
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 GGCATATATACTCTAGTAAATTATCCAAGTTCGCTTGCGTGGTTCTACCTTGACGTTCCT 777
Query 769 AAACTGGCTCAAGCAATGGGATTTAGTGAGGACACAATGTATATAGAGAATATTTACAAA 828
||||| |||| ||| ||||| ||| |||||||||||||||||||||||| || |||| |
Sbjct 778 AAACTAGCTCTAGCCATGGGGTTTGGTGAGGACACAATGTATATAGAGAGTACGTACACA 837
Query 829 GATATGGATGAAAGTAGACCATATCCAGCTCCGAGAGACGTTGAGAACTTGATTCGTAGT 888
|||||||||||||||||| | ||||||| ||| ||||||||||||||||||| |||||||
Sbjct 838 GATATGGATGAAAGTAGAACTTATCCAGTTCCAAGAGACGTTGAGAACTTGACTCGTAGT 897
Query 889 AAGGATATACCACTGGACTATCACTTATACACAGTTTTATGGCATTGGAGCTCCCTGACT 948
|||||||||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||
Sbjct 898 AAGGATATACCACTGGACTATCACTTGTACACAGTTTTGTGGCACTGGAGTTCCCTGACT 957
Query 949 TGCTTTATTAAGGCGTCATCGATTTTAATGCGAAAATTTACAAAATCTGATCCTGTTGGT 1008
||||||||||||||||| |||||||||||||||| ||| ||||||||||||||| |||||
Sbjct 958 TGCTTTATTAAGGCGTCTTCGATTTTAATGCGAAGATTAACAAAATCTGATCCTATTGGT 1017
Query 1009 ATTGAGCCAATATTGATTCCGATTTGTATTCTATTTTTTATATGTACCAAGATATACAGT 1068
| ||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||
Sbjct 1018 GTAGAGCCAATATTGATTCCAATTTCCATTCTCGTTTTTATATGTACCAAGATATACAGT 1077
Query 1069 CTTCGTAACTTATTTTGTAAAGTGGACACTATTGGTGTTGGGTGTCTCACTAAACTCGAG 1128
||||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||
Sbjct 1078 CTTCGTAACTTATTTTGTAAAATAGACACTATTGGTGTTGGGTGTGTCACTAAACTCGA- 1136
Query 1129 C-CAGGAAA 1136
| |||||||
Sbjct 1137 CACAGGAAA 1145
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61144263810
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5