BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473992
Length=1205
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48550.1 | Symbols: | Vacuolar protein sorting-associated p... 1855 0.0
> AT1G48550.1 | Symbols: | Vacuolar protein sorting-associated
protein 26 | chr1:17950579-17952693 REVERSE LENGTH=1245
Length=1245
Score = 1855 bits (1004), Expect = 0.0
Identities = 1143/1210 (94%), Gaps = 9/1210 (1%)
Strand=Plus/Plus
Query 1 CCACAAAAGCCGCTGTAGCTTAGTTCGGTGA-TTCAATGGCGACGGTGACGACGGTGAAT 59
|||||||| ||||||||||| || ||||||| | ||||||||||| |||||||||||||
Sbjct 13 CCACAAAATCCGCTGTAGCTAAGCTCGGTGAGTAAAATGGCGACGGCGACGACGGTGAAT 72
Query 60 GTCAAACTTTCTCGATCTAACCGTATCTATCGCTCCTCCGAACCAGTGGAAGGAAAAATT 119
||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct 73 GTCAAACTTTCTCGATCAAATCGTATCTATCGCTCTTCCGAACCAGTGGAAGGAAAAATT 132
Query 120 GTGATAAAATCTGCAACTTCGATTTCGCATCAAGCAATACGTTTATCCGTCAATGGATCA 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 133 GTGATAAAATCTGCAACTTCGATTTCGCATCAAGCAATACGTTTATCCGTCAATGGATCA 192
Query 180 GTCAACTTGCAGGTTCGTGGAGGATCAGCTGGAGTTATTGAGTCTTTCTATGGTGTCATC 239
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 193 GTCAACTTGCAGGTTCGTGGAGGATCAGCTGGAGTTATTGAGTCCTTCTATGGTGTCATC 252
Query 240 AAGCCTATTCAAATCGTCAAAAAGACGGTCGAAGTTAAATCTTCTGGCAAAATCCCTCCA 299
|||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||
Sbjct 253 AAGCCTATTCAAATCGTCAAGAAGACGATCGAAGTTAAGTCTTCTGGCAAAATCCCTCCG 312
Query 300 GGAACTACAGAGATACCATTCTCGTTGAATCTGAGGGAGCCTGGGGAAAGCATTGTAGAA 359
||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 313 GGAACTACAGAGATACCATTCTCTTTGAATCTGAGGGAGCCTGGGGAAGGCATTGTAGAG 372
Query 360 AAGTTCTATGAGACATTTCATGGAACAAATATCAACATCCAATATCTACTAACTGCAGAT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 373 AAGTTCTATGAGACATTTCATGGAACAAATATCAACATCCAATATCTACTAACTGCAGAT 432
Query 420 ATACCGCGAGGATACTTGCACAAACCTTTATCTGCAACAATGGAGTTTATTATTGAGAGC 479
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 433 ATACCGCGAGGATACTTGCACAAACCTTTGTCTGCAACAATGGAGTTTATTATTGAGAGC 492
Query 480 GGTAGAGTTGATCTTCCTGAGCGGCCAATTCCTCCAGAC-TTGGTCATCTTCTACATCAC 538
||||||||||| ||||| |||||||| |||||||| || ||| ||||||||||||||||
Sbjct 493 GGTAGAGTTGACCTTCCCGAGCGGCCTATTCCTCCGGAAATTG-TCATCTTCTACATCAC 551
Query 539 TCAAGACACACAGAGACATCCGTTGCTACCCGAGATTAAGACAGGTGGTTTCCGAGTTAC 598
||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||
Sbjct 552 TCAAGACACACAGAGACATCCGTTGCTGCCTGATATTAAGACAGGTGGTTTCCGAGTTAC 611
Query 599 TGGAAAATTAGCCACTCAGTGCTCTTTGCAGGATCCACTCAGTGGCGAGTTAACAGTGGA 658
||||||||||||||| || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 612 TGGAAAATTAGCCACCCAATGCTCTTTGCAGGATCCACTCAGTGGTGAGTTAACAGTGGA 671
Query 659 AGCATCTTCGGTTCCTATTACTTCTATCGACATTCACCTACTCCGTGTCGAGTCAATAAT 718
||||||||| ||||||||||||||||| ||||||||||||||||| || ||||| |||||
Sbjct 672 AGCATCTTCAGTTCCTATTACTTCTATTGACATTCACCTACTCCGAGTTGAGTCGATAAT 731
Query 719 TGTGGGGGAAAGGATTGTCACTGAGACCTCTTTGATTCAGTCTACACAGATTGCGGATGG 778
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 732 TGTAGGGGAAAGGATTGTCACTGAGACCTCTTTGATTCAGTCTACACAGATTGCGGATGG 791
Query 779 AGATGTATGCCGAAACTTGACTCTACCCATTTACGTTTTACTTCCTCGGCTTCTGATGTG 838
|||||| ||||| ||| ||||||||||||||||||||||||| ||||||||| | |||||
Sbjct 792 AGATGTGTGCCGTAACATGACTCTACCCATTTACGTTTTACTACCTCGGCTTTTAATGTG 851
Query 839 TCCTTCCGTTTTCGCAGGTCCCTTCTCAGTGGAATTCAAGGTATGCATCACCATAAGTTT 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 852 TCCTTCCGTTTTCGCAGGTCCCTTCTCAGTGGAATTCAAGGTATGCATCACCATAAGTTT 911
Query 899 CAAATCGAAGCTAGCGAAAGCACAACCGAAGTCTGATCCAACAGCTCCAAGACTATGGAT 958
||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 912 CAAATCGAAGCTAGCCAAAGCACAACCCAAGTCTGATCCAACAGCTCCAAGACTATGGAT 971
Query 959 GGCACTGGAGAGATTACCGCTGGAACTTGTCCGGACAAAGCGAGATCAGTTCAGCTGCTA 1018
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 GGCGCTGGAGAGATTACCGCTGGAACTTGTCCGGACAAAGCGAGATCAGTTCAGCTGCTA 1031
Query 1019 AAGAACAAGCTAACATATGA-GGTCAACACGTGTTTCTCATATGCATACACTTGGCCTTG 1077
|||||||||||||||||| | ||||||||| ||||||||||| ||||||||||||| |||
Sbjct 1032 AAGAACAAGCTAACATAT-ATGGTCAACACATGTTTCTCATACGCATACACTTGGCTTTG 1090
Query 1078 GAGTCGTATGCTTCCTAGCTTGATCTGCCTGCCTACT-TAGGAGGTT-AAAATCGTGTCT 1135
||||||||||||||||||||| |||| ||| ||| | || | |||| |||| |||||||
Sbjct 1091 TAGTCGTATGCTTCCTAGCTTGCTCTGTCTGGCTAATATAAGCGGTTTAAAA-CGTGTCT 1149
Query 1136 GCGAGTACAAATTCCGATTTTGTTACCCTGCCCCAATGTTTGTTACTATGTAGACTCCAA 1195
||| |||||||| |||||||| ||||||||||| |||||||||||||||| |||||||||
Sbjct 1150 GCGTGTACAAATCCCGATTTTATTACCCTGCCC-AATGTTTGTTACTATGCAGACTCCAA 1208
Query 1196 GATGTTCCTA 1205
||||||||||
Sbjct 1209 GATGTTCCTA 1218
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59186442555
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5