BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473992 Length=1205 Score E Sequences producing significant alignments: (Bits) Value AT1G48550.1 | Symbols: | Vacuolar protein sorting-associated p... 1855 0.0 > AT1G48550.1 | Symbols: | Vacuolar protein sorting-associated protein 26 | chr1:17950579-17952693 REVERSE LENGTH=1245 Length=1245 Score = 1855 bits (1004), Expect = 0.0 Identities = 1143/1210 (94%), Gaps = 9/1210 (1%) Strand=Plus/Plus Query 1 CCACAAAAGCCGCTGTAGCTTAGTTCGGTGA-TTCAATGGCGACGGTGACGACGGTGAAT 59 |||||||| ||||||||||| || ||||||| | ||||||||||| ||||||||||||| Sbjct 13 CCACAAAATCCGCTGTAGCTAAGCTCGGTGAGTAAAATGGCGACGGCGACGACGGTGAAT 72 Query 60 GTCAAACTTTCTCGATCTAACCGTATCTATCGCTCCTCCGAACCAGTGGAAGGAAAAATT 119 ||||||||||||||||| || |||||||||||||| |||||||||||||||||||||||| Sbjct 73 GTCAAACTTTCTCGATCAAATCGTATCTATCGCTCTTCCGAACCAGTGGAAGGAAAAATT 132 Query 120 GTGATAAAATCTGCAACTTCGATTTCGCATCAAGCAATACGTTTATCCGTCAATGGATCA 179 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 133 GTGATAAAATCTGCAACTTCGATTTCGCATCAAGCAATACGTTTATCCGTCAATGGATCA 192 Query 180 GTCAACTTGCAGGTTCGTGGAGGATCAGCTGGAGTTATTGAGTCTTTCTATGGTGTCATC 239 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 193 GTCAACTTGCAGGTTCGTGGAGGATCAGCTGGAGTTATTGAGTCCTTCTATGGTGTCATC 252 Query 240 AAGCCTATTCAAATCGTCAAAAAGACGGTCGAAGTTAAATCTTCTGGCAAAATCCCTCCA 299 |||||||||||||||||||| |||||| |||||||||| |||||||||||||||||||| Sbjct 253 AAGCCTATTCAAATCGTCAAGAAGACGATCGAAGTTAAGTCTTCTGGCAAAATCCCTCCG 312 Query 300 GGAACTACAGAGATACCATTCTCGTTGAATCTGAGGGAGCCTGGGGAAAGCATTGTAGAA 359 ||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 313 GGAACTACAGAGATACCATTCTCTTTGAATCTGAGGGAGCCTGGGGAAGGCATTGTAGAG 372 Query 360 AAGTTCTATGAGACATTTCATGGAACAAATATCAACATCCAATATCTACTAACTGCAGAT 419 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 373 AAGTTCTATGAGACATTTCATGGAACAAATATCAACATCCAATATCTACTAACTGCAGAT 432 Query 420 ATACCGCGAGGATACTTGCACAAACCTTTATCTGCAACAATGGAGTTTATTATTGAGAGC 479 ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 433 ATACCGCGAGGATACTTGCACAAACCTTTGTCTGCAACAATGGAGTTTATTATTGAGAGC 492 Query 480 GGTAGAGTTGATCTTCCTGAGCGGCCAATTCCTCCAGAC-TTGGTCATCTTCTACATCAC 538 ||||||||||| ||||| |||||||| |||||||| || ||| |||||||||||||||| Sbjct 493 GGTAGAGTTGACCTTCCCGAGCGGCCTATTCCTCCGGAAATTG-TCATCTTCTACATCAC 551 Query 539 TCAAGACACACAGAGACATCCGTTGCTACCCGAGATTAAGACAGGTGGTTTCCGAGTTAC 598 ||||||||||||||||||||||||||| || || |||||||||||||||||||||||||| Sbjct 552 TCAAGACACACAGAGACATCCGTTGCTGCCTGATATTAAGACAGGTGGTTTCCGAGTTAC 611 Query 599 TGGAAAATTAGCCACTCAGTGCTCTTTGCAGGATCCACTCAGTGGCGAGTTAACAGTGGA 658 ||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||| Sbjct 612 TGGAAAATTAGCCACCCAATGCTCTTTGCAGGATCCACTCAGTGGTGAGTTAACAGTGGA 671 Query 659 AGCATCTTCGGTTCCTATTACTTCTATCGACATTCACCTACTCCGTGTCGAGTCAATAAT 718 ||||||||| ||||||||||||||||| ||||||||||||||||| || ||||| ||||| Sbjct 672 AGCATCTTCAGTTCCTATTACTTCTATTGACATTCACCTACTCCGAGTTGAGTCGATAAT 731 Query 719 TGTGGGGGAAAGGATTGTCACTGAGACCTCTTTGATTCAGTCTACACAGATTGCGGATGG 778 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 732 TGTAGGGGAAAGGATTGTCACTGAGACCTCTTTGATTCAGTCTACACAGATTGCGGATGG 791 Query 779 AGATGTATGCCGAAACTTGACTCTACCCATTTACGTTTTACTTCCTCGGCTTCTGATGTG 838 |||||| ||||| ||| ||||||||||||||||||||||||| ||||||||| | ||||| Sbjct 792 AGATGTGTGCCGTAACATGACTCTACCCATTTACGTTTTACTACCTCGGCTTTTAATGTG 851 Query 839 TCCTTCCGTTTTCGCAGGTCCCTTCTCAGTGGAATTCAAGGTATGCATCACCATAAGTTT 898 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 852 TCCTTCCGTTTTCGCAGGTCCCTTCTCAGTGGAATTCAAGGTATGCATCACCATAAGTTT 911 Query 899 CAAATCGAAGCTAGCGAAAGCACAACCGAAGTCTGATCCAACAGCTCCAAGACTATGGAT 958 ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 912 CAAATCGAAGCTAGCCAAAGCACAACCCAAGTCTGATCCAACAGCTCCAAGACTATGGAT 971 Query 959 GGCACTGGAGAGATTACCGCTGGAACTTGTCCGGACAAAGCGAGATCAGTTCAGCTGCTA 1018 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 972 GGCGCTGGAGAGATTACCGCTGGAACTTGTCCGGACAAAGCGAGATCAGTTCAGCTGCTA 1031 Query 1019 AAGAACAAGCTAACATATGA-GGTCAACACGTGTTTCTCATATGCATACACTTGGCCTTG 1077 |||||||||||||||||| | ||||||||| ||||||||||| ||||||||||||| ||| Sbjct 1032 AAGAACAAGCTAACATAT-ATGGTCAACACATGTTTCTCATACGCATACACTTGGCTTTG 1090 Query 1078 GAGTCGTATGCTTCCTAGCTTGATCTGCCTGCCTACT-TAGGAGGTT-AAAATCGTGTCT 1135 ||||||||||||||||||||| |||| ||| ||| | || | |||| |||| ||||||| Sbjct 1091 TAGTCGTATGCTTCCTAGCTTGCTCTGTCTGGCTAATATAAGCGGTTTAAAA-CGTGTCT 1149 Query 1136 GCGAGTACAAATTCCGATTTTGTTACCCTGCCCCAATGTTTGTTACTATGTAGACTCCAA 1195 ||| |||||||| |||||||| ||||||||||| |||||||||||||||| ||||||||| Sbjct 1150 GCGTGTACAAATCCCGATTTTATTACCCTGCCC-AATGTTTGTTACTATGCAGACTCCAA 1208 Query 1196 GATGTTCCTA 1205 |||||||||| Sbjct 1209 GATGTTCCTA 1218 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 59186442555 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5