BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg473993
Length=2228
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48560.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2242 0.0
> AT1G48560.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function
unknown; INVOLVED IN: biological_process unknown;
LOCATED IN: cellular_component unknown; EXPRESSED IN: 12
plant structures; EXPRESSED DURING: 6 growth stages. | chr1:17952859-17955273
FORWARD LENGTH=2230
Length=2230
Score = 2242 bits (1214), Expect = 0.0
Identities = 1498/1629 (92%), Gaps = 44/1629 (3%)
Strand=Plus/Plus
Query 565 AAGTGCAGAGCT-AATGGATCGCTCTGAAGAATCAGAATGGTGTCTTGAATACTCAAAGA 623
|||||||||||| ||| ||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 628 AAGTGCAGAGCTAAAT-GATCGATCTGAAGAATCAGGTTGGTGTCTTGAATACTCAAAGA 686
Query 624 AGATGGACCTG-GCTTCTATGTTTCCTGAGACAGTGGATGCAGACGAGGGA-AACAGTAG 681
||||||||||| | |||||||||||||||||| | |||||| || | || ||||||||
Sbjct 687 AGATGGACCTGTG-TTCTATGTTTCCTGAGACTGCGGATGCGGA-TATCGACAACAGTAG 744
Query 682 AGATTTGAGTCTAAGTGATCCATTGCCAAAGGATATACCTTGTTGTTCTTCTCCTTCTTT 741
||||||||||||||| ||||||||||| |||||| | |||||||| | | ||||
Sbjct 745 AGATTTGAGTCTAAGAGATCCATTGCCGAAGGATCTCCCTTGTTG----T-T-CTTC--- 795
Query 742 TGTGCAGCGTGTTGATAAAGTAGTTCAGATTTGCACATGGAA-A--A--A-CCCTCTAAC 795
|| ||||| ||||||||||||||||||||||||||||||||| | | | ||||| |||
Sbjct 796 TGAGCAGCATGTTGATAAAGTAGTTCAGATTTGCACATGGAATACGAGGAGCCCTCGAAC 855
Query 796 CACCTCTAGTTCTAGCACCATAAAAGCTTGTGAAACCATGGTTCGAACAGCTG-T--T-- 850
|| |||| |||||| ||||| ||||||||||||||||||||| ||| ||||| | |
Sbjct 856 CAGTTCTAATTCTAGTACCATGAAAGCTTGTGAAACCATGGTTAGAAGAGCTGTTCATGA 915
Query 851 -GATGATGGTCACCGGTCTAAGAGTAAAGAAAGCTGTCAAGTTGAGCAGAGTATCTGCTT 909
||||||||||||| ||| |||||||||||| |||||||||||||||||| |||||||||
Sbjct 916 GGATGATGGTCACCTGTCCAAGAGTAAAGAATGCTGTCAAGTTGAGCAGAATATCTGCTT 975
Query 910 ACTGAATTCAGAACCTCCTATTGAAGATATGATAGAGGAAGACACCACTTCCGTTGCTGC 969
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 976 ATTGAATTCAGAACCTTCTATTGAAGATATGATAGAGGAAGACACCACTTCCGTTGCTGC 1035
Query 970 CACAAGAGTTGATGTATCAGAAGCACTTCCAGATGTTATGATTGAAACGCATGATGACAT 1029
| |||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1036 CTCAAGAGTTGATGTATCAGAAGCACTTCCTGATGTTATGATTGAAACTCATGATGACAT 1095
Query 1030 CATTGGTTTGGTTGATGGGCCTGTGACATCGACAAAACAACTGTCACCCTTGCTTGATGT 1089
|||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
Sbjct 1096 CATTGGTTTGGTTGATGGACCTGTGACATCGACAAATGAACTGTCACCCTTGCTTGAT-T 1154
Query 1090 -GAGTAACGACAAAGCATATTTGGCAAAGCCTGTTTCTTTTGTTGTTCCGGGAGCCTGTC 1148
||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1155 CGAGCAACGACAAAGCTTATTTGGCAAAGCCTGTTTCTTTTGTTGTTCCAGGAGCCTGTC 1214
Query 1149 ACACTCTAGCTTGTTCCA-TGAGaaaaaaaTATGCTAGCCCAAGAAACAAGCTTGATAGC 1207
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct 1215 ACACTCTAGCTTGTT-CAGTGAGAAAAAAATATGCTAGCCCAAGAAACAAGCTTGATAGC 1273
Query 1208 CCTATCATCAGTGCCAATACCTTGAATCAGCAGCCGTTAGATAGGAATAGTCTTAATGGA 1267
|||||||||||||||| ||||||||| ||||| |||||| |||||||||||||||||||
Sbjct 1274 TCTATCATCAGTGCCAAGACCTTGAATGAGCAGTCGTTAGGTAGGAATAGTCTTAATGGA 1333
Query 1268 ACACGAGAAAACTGCTCTGAGGATGCGTTGGAGTCACATATTGTGGAGGTTGGACAGGTT 1327
|||||||||||||||||||| || ||||||||||||||||||||||||| |||||||||
Sbjct 1334 ACACGAGAAAACTGCTCTGAATATACGTTGGAGTCACATATTGTGGAGGTGGGACAGGTT 1393
Query 1328 TCGCTACATAGTACAGGCACTTCAAACAAAGAATTCAGTTCTGATGATGTAGGCATAGCA 1387
||||||| ||||||||||||||||||||||||||| ||||||||||||| ||| ||||
Sbjct 1394 TCGCTACCTAGTACAGGCACTTCAAACAAAGAATTTAGTTCTGATGATGCAGG---AGCA 1450
Query 1388 CCTGCAGCACAAGTACAAGATTTGGAACCTGGAACAACTGTTGAAAACCAGACGAGATCA 1447
||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1451 CCTGCAGAACAATTACAAGATTTGGAAGCTGGAACAACTGTTGAAAACCAGACGAGATCA 1510
Query 1448 GTTGATAATGTCAGATCCATTGGTCTCAAAAGGAAAGCAAGTCGAGACAAATCATTTGCA 1507
|||||||||||||||||||||||| |||||||||| ||||||||||||||| ||| ||||
Sbjct 1511 GTTGATAATGTCAGATCCATTGGTGTCAAAAGGAAGGCAAGTCGAGACAAAGCATCTGCA 1570
Query 1508 CGAAACTCCAAGAGAACGAAGAAAGCAGCCCAACAATCTATTGCTACTGATAAACCGCTG 1567
|| |||||||||||| ||||||||||| ||||||||||||| ||||||||||| |||||
Sbjct 1571 CGTTACTCCAAGAGAAAGAAGAAAGCAGGCCAACAATCTATTTCTACTGATAAATCGCTG 1630
Query 1568 AATCTACACCTGATGAAAGATATGCGGCTTGCTAATCCAAAATGTTTGCGAATGAAGTTT 1627
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1631 AATCTACACCTGATGAAAGATATGCGGCTTGCTAATCCAAAATGTTTGCGGATGAAGTTT 1690
Query 1628 TTGAGTAGACATGGGGATCTCCCATCCAAAGCAGAACTGTTGAAGAGATTCAGTGTGTTT 1687
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1691 TTGTGTAGACATGGGGATCTCCCGTCCAAAGCAGAACTGTTGAAGAGATTCAGTGTGTTT 1750
Query 1688 GGGAAAATAGATGCTTCAAGAACTGATGTAAACCCAGGGGAAAGCTCTGCGAAAGTAGTA 1747
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1751 GGGAAAATAGATGCTTCAAGAACTGATGTAAACCCAGGGGAAAGCTCTGCGAAAGTAGTA 1810
Query 1748 TTCGTGCAGAGCATCGATGCAGTGACGGCTTATCAATTTGCTAGGAGCAAAAAGTTTAGA 1807
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1811 TTCATGCAGAGCATCGATGCAGTGACGGCTTATCAATTTGCTAGGAGCAAAAAGTTTAGA 1870
Query 1808 CTAGGACGGTCTAAGGTTACGTACCGCCTCGACCCCTTTGAGGAAGACAATGAAGTAAAC 1867
|||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1871 CTAGGAAAGTCTAAGGTTACGTACCGCCTCGAACCCTTTGAGGAAGACAATGAAGTAAAA 1930
Query 1868 AAAGTTCCTTTGCCTCAGAAGCCTCAAAAGTCTGTTCCATCACCAAAATCATGTCTCAAG 1927
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 1931 AAAGTTCCTTTGCCTCAGAAGCCGCAAAAGTCTGCTCCATCACCAAAATCATGTCTCAAG 1990
Query 1928 GAACAAGGTTCGGTAGATAAAGAAGAGGGAAGAAGGAATATGAAGGTGAAATTTCAAATG 1987
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1991 GAACATGGTTTGGTAGATAAAGAAGAGGGAAGAAGGAATATGAAGGTGAAATTTCAAATG 2050
Query 1988 GAGACTAACTCATGAATCCGATAACATCATCATCTCAATAGTTTGTGCATAGCTTATGTC 2047
||||| |||||||||||||||| ||||||||||||||||||||| | | ||||||||
Sbjct 2051 GAGACCAACTCATGAATCCGATGACATCATCATCTCAATAGTTT-T--A--GCTTATGTA 2105
Query 2048 GCTCTCACGGGAATCTTTCGTAGTATAGCGATTGTCTGTTCCTAACGAAGAACTTGCACC 2107
||||||||||||| |||| ||| | |||| | |||||||||||||||||||||||||||
Sbjct 2106 GCTCTCACGGGAAGCTTTTGTAATGTAGCTACGGTCTGTTCCTAACGAAGAACTTGCACC 2165
Query 2108 tttttttGGTCCT-GAAGCTTTTGTATAATCATGGCTTGTTTTGTCTTAGAGATTTTGGC 2166
||||||||| ||| ||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 2166 TTTTTTTGG-CCTTGAAGCTTTTGTATAATCATGGCTTGTTTTGTATTAGAGAT---GAC 2221
Query 2167 ATAGTTTGT 2175
|||||||||
Sbjct 2222 ATAGTTTGT 2230
Score = 682 bits (369), Expect = 0.0
Identities = 505/567 (89%), Gaps = 24/567 (4%)
Strand=Plus/Plus
Query 1 ACACTTTCTTCTCTCTTGTCTTGTCAAAGAGATGATATGAGAGATAAAGCTTAAACCCTA 60
|||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||
Sbjct 7 ACACTTTCTTCTCTCTTGTCTTGTCACAGAGATGATATCAGAGAGAAAGCTTAAACCCTA 66
Query 61 ATTTTCATCAGAGAAGAAAATGTGGAAGAAAGGGGAGCTAGTTTGGGTAAGCTTTAGCTT 120
| | | || | ||| ||||||||||||||||||||||||||||||||| | |||||
Sbjct 67 A-TAT--TC--A-AAG---ATGTGGAAGAAAGGGGAGCTAGTTTGGGTAAGCGTGAGCTT 117
Query 121 TTCGGATACATGGATTCCGGGTCGGATTCTTGATCCATCCGAATCGTTAG---T-CTCGT 176
|||| ||||||||||||||||||||||| | ||||||||||||||||||| | |||||
Sbjct 118 TTCGAATACATGGATTCCGGGTCGGATTATCGATCCATCCGAATCGTTAGGAGTTCTCGT 177
Query 177 -TC-TTC---GGCTTAATGGAGCCGCGTTACGTTCCAAAACC-TTGTCTACGAAGCTTCG 230
|| ||| ||| ||||||| ||||| |||||||||||||| || |||||||||||| |
Sbjct 178 CTCGTTCTTCGGCCTAATGGATCCGCGATACGTTCCAAAACCATT-TCTACGAAGCTTTG 236
Query 231 ATCGCGATTTCGGAAAC-TTGATTTCAGATTCACGGAGGATTCGCCGGTTTGTGAATCGA 289
||||||||||| |||| ||||||||||||||| || |||||||||| ||||||||||||
Sbjct 237 ATCGCGATTTCA-AAACCTTGATTTCAGATTCAAGGTGGATTCGCCGCTTTGTGAATCGA 295
Query 290 GCTCTGCGAGCTCACTTTTGGAATATCTCGTTTGGGTTATGGTGTTCTTGCCAGCCACTT 349
|||||||||||| |||||||||| |||||||||||||||||||||||||||||||| | |
Sbjct 296 GCTCTGCGAGCTTACTTTTGGAACATCTCGTTTGGGTTATGGTGTTCTTGCCAGCCGCGT 355
Query 350 ATTGATTCTCCTTACTTCGATAGAGAAAACTCTCTCCCATGGTTTCCT-CTAACTTCGGA 408
|||||||| |||||||| ||||||||||||||||||||| |||||| | | | |||||||
Sbjct 356 ATTGATTCGCCTTACTTGGATAGAGAAAACTCTCTCCCACGGTTTCATGCCA-CTTCGGA 414
Query 409 TTCGGCTCTGGGTTTTGTTCGAGATATGGCCATTTCTATACGAGTGCCTCTCTGGAGATT 468
|||||||||||| |||||| |||||||||| ||||| |||||| |||| |||||||||||
Sbjct 415 TTCGGCTCTGGGGTTTGTTAGAGATATGGCTATTTCGATACGAATGCCCCTCTGGAGATT 474
Query 469 AGCTGAGACCAACAGTTCGAGTGCTCAAATCCTTAGTTTTCGGCGTTACATTGTTGATTT 528
|||||||||||| ||||| |||||||| |||||||||||||||||||||||||| |||||
Sbjct 475 AGCTGAGACCAATAGTTCCAGTGCTCAGATCCTTAGTTTTCGGCGTTACATTGTCGATTT 534
Query 529 TAAGCGTTCCAAATCTGTCTATGAGGA 555
|||||| ||| ||||||||||||||||
Sbjct 535 TAAGCGCTCCGAATCTGTCTATGAGGA 561
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 110541600090
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5