BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg473993 Length=2228 Score E Sequences producing significant alignments: (Bits) Value AT1G48560.2 | Symbols: | unknown protein; FUNCTIONS IN: molecu... 2242 0.0 > AT1G48560.2 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: 6 growth stages. | chr1:17952859-17955273 FORWARD LENGTH=2230 Length=2230 Score = 2242 bits (1214), Expect = 0.0 Identities = 1498/1629 (92%), Gaps = 44/1629 (3%) Strand=Plus/Plus Query 565 AAGTGCAGAGCT-AATGGATCGCTCTGAAGAATCAGAATGGTGTCTTGAATACTCAAAGA 623 |||||||||||| ||| ||||| ||||||||||||| |||||||||||||||||||||| Sbjct 628 AAGTGCAGAGCTAAAT-GATCGATCTGAAGAATCAGGTTGGTGTCTTGAATACTCAAAGA 686 Query 624 AGATGGACCTG-GCTTCTATGTTTCCTGAGACAGTGGATGCAGACGAGGGA-AACAGTAG 681 ||||||||||| | |||||||||||||||||| | |||||| || | || |||||||| Sbjct 687 AGATGGACCTGTG-TTCTATGTTTCCTGAGACTGCGGATGCGGA-TATCGACAACAGTAG 744 Query 682 AGATTTGAGTCTAAGTGATCCATTGCCAAAGGATATACCTTGTTGTTCTTCTCCTTCTTT 741 ||||||||||||||| ||||||||||| |||||| | |||||||| | | |||| Sbjct 745 AGATTTGAGTCTAAGAGATCCATTGCCGAAGGATCTCCCTTGTTG----T-T-CTTC--- 795 Query 742 TGTGCAGCGTGTTGATAAAGTAGTTCAGATTTGCACATGGAA-A--A--A-CCCTCTAAC 795 || ||||| ||||||||||||||||||||||||||||||||| | | | ||||| ||| Sbjct 796 TGAGCAGCATGTTGATAAAGTAGTTCAGATTTGCACATGGAATACGAGGAGCCCTCGAAC 855 Query 796 CACCTCTAGTTCTAGCACCATAAAAGCTTGTGAAACCATGGTTCGAACAGCTG-T--T-- 850 || |||| |||||| ||||| ||||||||||||||||||||| ||| ||||| | | Sbjct 856 CAGTTCTAATTCTAGTACCATGAAAGCTTGTGAAACCATGGTTAGAAGAGCTGTTCATGA 915 Query 851 -GATGATGGTCACCGGTCTAAGAGTAAAGAAAGCTGTCAAGTTGAGCAGAGTATCTGCTT 909 ||||||||||||| ||| |||||||||||| |||||||||||||||||| ||||||||| Sbjct 916 GGATGATGGTCACCTGTCCAAGAGTAAAGAATGCTGTCAAGTTGAGCAGAATATCTGCTT 975 Query 910 ACTGAATTCAGAACCTCCTATTGAAGATATGATAGAGGAAGACACCACTTCCGTTGCTGC 969 | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 976 ATTGAATTCAGAACCTTCTATTGAAGATATGATAGAGGAAGACACCACTTCCGTTGCTGC 1035 Query 970 CACAAGAGTTGATGTATCAGAAGCACTTCCAGATGTTATGATTGAAACGCATGATGACAT 1029 | |||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 1036 CTCAAGAGTTGATGTATCAGAAGCACTTCCTGATGTTATGATTGAAACTCATGATGACAT 1095 Query 1030 CATTGGTTTGGTTGATGGGCCTGTGACATCGACAAAACAACTGTCACCCTTGCTTGATGT 1089 |||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| | Sbjct 1096 CATTGGTTTGGTTGATGGACCTGTGACATCGACAAATGAACTGTCACCCTTGCTTGAT-T 1154 Query 1090 -GAGTAACGACAAAGCATATTTGGCAAAGCCTGTTTCTTTTGTTGTTCCGGGAGCCTGTC 1148 ||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||| Sbjct 1155 CGAGCAACGACAAAGCTTATTTGGCAAAGCCTGTTTCTTTTGTTGTTCCAGGAGCCTGTC 1214 Query 1149 ACACTCTAGCTTGTTCCA-TGAGaaaaaaaTATGCTAGCCCAAGAAACAAGCTTGATAGC 1207 ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| Sbjct 1215 ACACTCTAGCTTGTT-CAGTGAGAAAAAAATATGCTAGCCCAAGAAACAAGCTTGATAGC 1273 Query 1208 CCTATCATCAGTGCCAATACCTTGAATCAGCAGCCGTTAGATAGGAATAGTCTTAATGGA 1267 |||||||||||||||| ||||||||| ||||| |||||| ||||||||||||||||||| Sbjct 1274 TCTATCATCAGTGCCAAGACCTTGAATGAGCAGTCGTTAGGTAGGAATAGTCTTAATGGA 1333 Query 1268 ACACGAGAAAACTGCTCTGAGGATGCGTTGGAGTCACATATTGTGGAGGTTGGACAGGTT 1327 |||||||||||||||||||| || ||||||||||||||||||||||||| ||||||||| Sbjct 1334 ACACGAGAAAACTGCTCTGAATATACGTTGGAGTCACATATTGTGGAGGTGGGACAGGTT 1393 Query 1328 TCGCTACATAGTACAGGCACTTCAAACAAAGAATTCAGTTCTGATGATGTAGGCATAGCA 1387 ||||||| ||||||||||||||||||||||||||| ||||||||||||| ||| |||| Sbjct 1394 TCGCTACCTAGTACAGGCACTTCAAACAAAGAATTTAGTTCTGATGATGCAGG---AGCA 1450 Query 1388 CCTGCAGCACAAGTACAAGATTTGGAACCTGGAACAACTGTTGAAAACCAGACGAGATCA 1447 ||||||| |||| |||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1451 CCTGCAGAACAATTACAAGATTTGGAAGCTGGAACAACTGTTGAAAACCAGACGAGATCA 1510 Query 1448 GTTGATAATGTCAGATCCATTGGTCTCAAAAGGAAAGCAAGTCGAGACAAATCATTTGCA 1507 |||||||||||||||||||||||| |||||||||| ||||||||||||||| ||| |||| Sbjct 1511 GTTGATAATGTCAGATCCATTGGTGTCAAAAGGAAGGCAAGTCGAGACAAAGCATCTGCA 1570 Query 1508 CGAAACTCCAAGAGAACGAAGAAAGCAGCCCAACAATCTATTGCTACTGATAAACCGCTG 1567 || |||||||||||| ||||||||||| ||||||||||||| ||||||||||| ||||| Sbjct 1571 CGTTACTCCAAGAGAAAGAAGAAAGCAGGCCAACAATCTATTTCTACTGATAAATCGCTG 1630 Query 1568 AATCTACACCTGATGAAAGATATGCGGCTTGCTAATCCAAAATGTTTGCGAATGAAGTTT 1627 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1631 AATCTACACCTGATGAAAGATATGCGGCTTGCTAATCCAAAATGTTTGCGGATGAAGTTT 1690 Query 1628 TTGAGTAGACATGGGGATCTCCCATCCAAAGCAGAACTGTTGAAGAGATTCAGTGTGTTT 1687 ||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1691 TTGTGTAGACATGGGGATCTCCCGTCCAAAGCAGAACTGTTGAAGAGATTCAGTGTGTTT 1750 Query 1688 GGGAAAATAGATGCTTCAAGAACTGATGTAAACCCAGGGGAAAGCTCTGCGAAAGTAGTA 1747 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1751 GGGAAAATAGATGCTTCAAGAACTGATGTAAACCCAGGGGAAAGCTCTGCGAAAGTAGTA 1810 Query 1748 TTCGTGCAGAGCATCGATGCAGTGACGGCTTATCAATTTGCTAGGAGCAAAAAGTTTAGA 1807 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1811 TTCATGCAGAGCATCGATGCAGTGACGGCTTATCAATTTGCTAGGAGCAAAAAGTTTAGA 1870 Query 1808 CTAGGACGGTCTAAGGTTACGTACCGCCTCGACCCCTTTGAGGAAGACAATGAAGTAAAC 1867 |||||| |||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1871 CTAGGAAAGTCTAAGGTTACGTACCGCCTCGAACCCTTTGAGGAAGACAATGAAGTAAAA 1930 Query 1868 AAAGTTCCTTTGCCTCAGAAGCCTCAAAAGTCTGTTCCATCACCAAAATCATGTCTCAAG 1927 ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| Sbjct 1931 AAAGTTCCTTTGCCTCAGAAGCCGCAAAAGTCTGCTCCATCACCAAAATCATGTCTCAAG 1990 Query 1928 GAACAAGGTTCGGTAGATAAAGAAGAGGGAAGAAGGAATATGAAGGTGAAATTTCAAATG 1987 ||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1991 GAACATGGTTTGGTAGATAAAGAAGAGGGAAGAAGGAATATGAAGGTGAAATTTCAAATG 2050 Query 1988 GAGACTAACTCATGAATCCGATAACATCATCATCTCAATAGTTTGTGCATAGCTTATGTC 2047 ||||| |||||||||||||||| ||||||||||||||||||||| | | |||||||| Sbjct 2051 GAGACCAACTCATGAATCCGATGACATCATCATCTCAATAGTTT-T--A--GCTTATGTA 2105 Query 2048 GCTCTCACGGGAATCTTTCGTAGTATAGCGATTGTCTGTTCCTAACGAAGAACTTGCACC 2107 ||||||||||||| |||| ||| | |||| | ||||||||||||||||||||||||||| Sbjct 2106 GCTCTCACGGGAAGCTTTTGTAATGTAGCTACGGTCTGTTCCTAACGAAGAACTTGCACC 2165 Query 2108 tttttttGGTCCT-GAAGCTTTTGTATAATCATGGCTTGTTTTGTCTTAGAGATTTTGGC 2166 ||||||||| ||| ||||||||||||||||||||||||||||||| |||||||| | | Sbjct 2166 TTTTTTTGG-CCTTGAAGCTTTTGTATAATCATGGCTTGTTTTGTATTAGAGAT---GAC 2221 Query 2167 ATAGTTTGT 2175 ||||||||| Sbjct 2222 ATAGTTTGT 2230 Score = 682 bits (369), Expect = 0.0 Identities = 505/567 (89%), Gaps = 24/567 (4%) Strand=Plus/Plus Query 1 ACACTTTCTTCTCTCTTGTCTTGTCAAAGAGATGATATGAGAGATAAAGCTTAAACCCTA 60 |||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||| Sbjct 7 ACACTTTCTTCTCTCTTGTCTTGTCACAGAGATGATATCAGAGAGAAAGCTTAAACCCTA 66 Query 61 ATTTTCATCAGAGAAGAAAATGTGGAAGAAAGGGGAGCTAGTTTGGGTAAGCTTTAGCTT 120 | | | || | ||| ||||||||||||||||||||||||||||||||| | ||||| Sbjct 67 A-TAT--TC--A-AAG---ATGTGGAAGAAAGGGGAGCTAGTTTGGGTAAGCGTGAGCTT 117 Query 121 TTCGGATACATGGATTCCGGGTCGGATTCTTGATCCATCCGAATCGTTAG---T-CTCGT 176 |||| ||||||||||||||||||||||| | ||||||||||||||||||| | ||||| Sbjct 118 TTCGAATACATGGATTCCGGGTCGGATTATCGATCCATCCGAATCGTTAGGAGTTCTCGT 177 Query 177 -TC-TTC---GGCTTAATGGAGCCGCGTTACGTTCCAAAACC-TTGTCTACGAAGCTTCG 230 || ||| ||| ||||||| ||||| |||||||||||||| || |||||||||||| | Sbjct 178 CTCGTTCTTCGGCCTAATGGATCCGCGATACGTTCCAAAACCATT-TCTACGAAGCTTTG 236 Query 231 ATCGCGATTTCGGAAAC-TTGATTTCAGATTCACGGAGGATTCGCCGGTTTGTGAATCGA 289 ||||||||||| |||| ||||||||||||||| || |||||||||| |||||||||||| Sbjct 237 ATCGCGATTTCA-AAACCTTGATTTCAGATTCAAGGTGGATTCGCCGCTTTGTGAATCGA 295 Query 290 GCTCTGCGAGCTCACTTTTGGAATATCTCGTTTGGGTTATGGTGTTCTTGCCAGCCACTT 349 |||||||||||| |||||||||| |||||||||||||||||||||||||||||||| | | Sbjct 296 GCTCTGCGAGCTTACTTTTGGAACATCTCGTTTGGGTTATGGTGTTCTTGCCAGCCGCGT 355 Query 350 ATTGATTCTCCTTACTTCGATAGAGAAAACTCTCTCCCATGGTTTCCT-CTAACTTCGGA 408 |||||||| |||||||| ||||||||||||||||||||| |||||| | | | ||||||| Sbjct 356 ATTGATTCGCCTTACTTGGATAGAGAAAACTCTCTCCCACGGTTTCATGCCA-CTTCGGA 414 Query 409 TTCGGCTCTGGGTTTTGTTCGAGATATGGCCATTTCTATACGAGTGCCTCTCTGGAGATT 468 |||||||||||| |||||| |||||||||| ||||| |||||| |||| ||||||||||| Sbjct 415 TTCGGCTCTGGGGTTTGTTAGAGATATGGCTATTTCGATACGAATGCCCCTCTGGAGATT 474 Query 469 AGCTGAGACCAACAGTTCGAGTGCTCAAATCCTTAGTTTTCGGCGTTACATTGTTGATTT 528 |||||||||||| ||||| |||||||| |||||||||||||||||||||||||| ||||| Sbjct 475 AGCTGAGACCAATAGTTCCAGTGCTCAGATCCTTAGTTTTCGGCGTTACATTGTCGATTT 534 Query 529 TAAGCGTTCCAAATCTGTCTATGAGGA 555 |||||| ||| |||||||||||||||| Sbjct 535 TAAGCGCTCCGAATCTGTCTATGAGGA 561 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 110541600090 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5