BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg474000
Length=1913
Score E
Sequences producing significant alignments: (Bits) Value
AT1G48620.1 | Symbols: HON5 | high mobility group A5 | chr1:179... 2704 0.0
AT3G18035.1 | Symbols: HON4 | winged-helix DNA-binding transcri... 213 5e-54
> AT1G48620.1 | Symbols: HON5 | high mobility group A5 | chr1:17973697-17976389
REVERSE LENGTH=1979
Length=1979
Score = 2704 bits (1464), Expect = 0.0
Identities = 1806/1959 (92%), Gaps = 71/1959 (4%)
Strand=Plus/Plus
Query 1 aaaaaaaaaaacctaaaaatcaaaaaTCTCATCACCTTCCTTGTTCTGTAATATTTTCTC 60
||||||||||| ||||||||||||||||||||||||||||||| ||||| || |||||||
Sbjct 14 AAAAAAAAAAAACTAAAAATCAAAAATCTCATCACCTTCCTTGCTCTGT-ATTTTTTCTC 72
Query 61 TCT--CTAAA---TCCATGGATCCTTCTCTCTCTGTAACCAATGATCCTCATCA------ 109
||| ||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct 73 TCTCACTAAATCCTCCATGGATCCTTCTCTCTCTGCAACCAATGATCCTCATCATCCTCC 132
Query 110 TCCTCCTCAGTTCACATCTTTCCCTCCTTTCACCACCAACTCCAACCCTTTCTCCACTCA 169
|||||||||||||||||||||||||||||| ||||||| ||||||| ||| || |||
Sbjct 133 TCCTCCTCAGTTCACATCTTTCCCTCCTTT---CACCAACACCAACCCCTTCGCCTCTCC 189
Query 170 AAACCACCCCTTCTTCACCGGAGCCACCGCCGTCGGGCCGCCAAACAACATCCATCTCTA 229
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct 190 AAACCACCCCTTCTTCACCGGACCCACCGCCGTCGCGCCGCCAAACAACATCCATCTCTA 249
Query 230 TC-A--AGCTCCTCCTCCGCAGCCACAAACATCTCCAGTTCCTCCTCATCCATCTATTTC 286
|| | ||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct 250 TCAAGCAGCTCCTCCGCAGCAGCCACAAACATCTCCAGTTCCTCCTCATCCATCTATTTC 309
Query 287 CCACCCTCCTTACTCTGACATGATTTGTACGGCGATTGCAGCGTTAAACGAACCAGATGG 346
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 310 CCACCCTCCTTACTCTGACATGATTTGCACGGCGATTGCAGCGTTAAACGAACCAGATGG 369
Query 347 GTCAAGCAAGCAAGCGATTTCGAGGTACATCGAAAGAATTTACACTGGGATTCCTACTGC 406
||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||
Sbjct 370 GTCAAGCAAGCAAGCTATTTCGAGGTACATAGAGAGAATTTACACTGGGATTCCTACTGC 429
Query 407 TCATGGAGCTTTGTTGACACACCATCTCAAGACTTTGAAGACCAGTGGGATTCTTATGAT 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 430 TCATGGAGCTTTGTTGACACACCATCTCAAGACTTTGAAGACCAGTGGGATTCTTGTCAT 489
Query 467 GGTTAAGAAATCTTACAAG-TTAGCTTCTA---CTCCTCCTCCTACTAGT-GTAGCTGCA 521
||||||||||||||||||| || ||||||| ||||||||||| || | ||| || |
Sbjct 490 GGTTAAGAAATCTTACAAGCTT-GCTTCTACTCCTCCTCCTCCTCCTCCTACTAG-TGTA 547
Query 522 GCTTCTGGTCTTGAACCTCCCAGATCTGATTTCATAGTCAACGAGAACCAACCTTTACCT 581
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 548 GCTCCTAGTCTTGAACCTCCCAGATCTGATTTCATAGTCAACGAGAACCAACCTTTACCT 607
Query 582 GATCCGGGTTTGGCTTCTTCTACTACTCCTCAGACTCTGAAACGTGGTCGTGGTCGACCT 641
||||||| ||||||||| | | |||||||||||||| | |||||||||||||||||||||
Sbjct 608 GATCCGGTTTTGGCTTC-T-T-CTACTCCTCAGACTATTAAACGTGGTCGTGGTCGACCT 664
Query 642 CC-AAAGACTAAACCAGATGTTGTTCAACCTCAA-CTCCAGACTAATGGAAAACCCACCT 699
|| |||| |||||||||||||||||||||||||| || | |||||||||||||| |||||
Sbjct 665 CCAAAAG-CTAAACCAGATGTTGTTCAACCTCAACCT-CTGACTAATGGAAAACTCACCT 722
Query 700 GGGAACAGAGTGAATTACCTGTTTCTCGACCAGAGGAGATACAGATACA---GCCACAG- 755
|||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct 723 GGGAACAGAGTGAATTACCTGTCTCTCGACCAGAGGAGATACAGATACAGCCGCCACAGT 782
Query 756 --CC---ACAG-C-C-G-A--CGGTTAAGAGACCGCCGGGTCGTCCTAGAAAAGACGGAG 804
|| |||| | | | | |||||||||||||||||||||||||||||||||| |||
Sbjct 783 TACCGTTACAGCCACAGCAGCCGGTTAAGAGACCGCCGGGTCGTCCTAGAAAAGATGGAA 842
Query 805 CTTCACCGACAGTGAAGGCAGCTGCTTCTGTTTCCGGCGGTGTGGAGACTGTGAAACGAA 864
|||| ||||| |||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 843 CTTCGCCGACGGTGAAGCCAGCTGCTTCTGTTTCCGGTGGTGTGGAGACTGTGAAACGAA 902
Query 865 GAGGTAGGCCTCCGAGTGGAAGAGCTGTTGGGAGAGAGAGGAAGCCTATTGTAGTCTCAG 924
||||||| ||||||||||||||||||| |||||| ||||| |||||||| ||||||||||
Sbjct 903 GAGGTAGACCTCCGAGTGGAAGAGCTGCTGGGAGGGAGAGAAAGCCTATAGTAGTCTCAG 962
Query 925 CTCCGGCTTCGGTGTTCCCGTATGTTGCTAATGGTGGTGTTAGACGCCGAGGGAGACCAA 984
|||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 963 CTCCAGCTTCAGTGTTCCCGTATGTTGCTAATGGTGGTGTTAGACGCCGAGGGAGACCAA 1022
Query 985 AGAGAGTTGACGCTGGTGGTGCTTCCTCTGTTGcaccaccaccaccaccgccaccTAACG 1044
|||||||||||||||||||||||||||||||||| |||||||||||||| ||| ||||||
Sbjct 1023 AGAGAGTTGACGCTGGTGGTGCTTCCTCTGTTGCTCCACCACCACCACCACCAACTAACG 1082
Query 1045 CGGAGAGTGGAGGAGAGGAGGTTGCAGTCAAGAAACGAGGAAGAGGACGGCCTCCTAAGG 1104
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1083 TAGAGAGTGGAGGAGAGGAGGTTGCAGTCAAGAAACGAGGAAGAGGACGGCCTCCTAAGA 1142
Query 1105 TTGGAGGTGTTATCAGGAAGCCTATGAAGCCGATGAGAAGCTTTGCTCGTACTGGAAGAC 1164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1143 TTGGAGGTGTTATCAGGAAGCCTATGAAGCCGATGAGAAGCTTTGCTCGTACTGGAAAAC 1202
Query 1165 CCTTAGGAAGACCCAGAAAGAATGCGGTGTCAGTGGGAGCTTCTGGACGACAAGATGGTG 1224
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1203 CCGTAGGAAGACCCAGAAAGAATGCGGTGTCAGTGGGAGCTTCTGGACGACAAGATGGTG 1262
Query 1225 ATTATGGAGAACTTAAGAAGAAGTTTGAGTTGTTTCAAGCGAGAGCTAAGGATATTGTTA 1284
| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1263 ACTATGGAGAACTGAAGAAGAAGTTTGAGTTGTTTCAAGCGAGAGCTAAGGATATTGTAA 1322
Query 1285 TTGTGTTGAAATCTGAGATTGGAGGAAGTGGAAATCAAGCGGTGGTTCAAGCCATACAGG 1344
||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 1323 TTGTGTTGAAATCCGAGATAGGAGGAAGTGGAAATCAAGCAGTGGTTCAAGCCATACAGG 1382
Query 1345 ACCTGGAAGGGCTAACCGAGACAACAAACGAGCCACAACAGCACATGCCAGAATTGCAGC 1404
||||||||||| || | |||||||||||||||||| || ||||||| |||| ||||||
Sbjct 1383 ACCTGGAAGGGATAGCAGAGACAACAAACGAGCCA-AA--GCACATGGAAGAAGTGCAGC 1439
Query 1405 TGCCAGACGAGGAACACCCTGAAACCGAACCCGAACCAGAGGGACAAGGACAGACAGAAG 1464
|||||||||||||||||| |||||||||||| ||| ||||||| ||||||||||||||||
Sbjct 1440 TGCCAGACGAGGAACACCTTGAAACCGAACCAGAAGCAGAGGGTCAAGGACAGACAGAAG 1499
Query 1465 CAGAGGCAATGCAAGAAGCTCTGTTCTAAAGAGA--GCCTTGACACAAAAAGCTAGCAAG 1522
|||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||||
Sbjct 1500 CAGAGGCAATGCAAGAAGCTCTGTTCTAAAGATAAAGCCTTGACATAAAAAGCTAGCAAG 1559
Query 1523 TGGTGGGTTTGTTTGTTGTGTGTTCCATGAAATTTTTAATCTTTATAAGGGTGTTTGCAG 1582
|||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1560 TGGTGGGTTTACTTGTTGTGTGTTACATGAAATTTTTAATCTT-ATAAGGGTGTTTGCAG 1618
Query 1583 GAGAAAAACAAAAAGAACAATGTGATGA--TGATGATTG-TG-TTGTGTCTCTAACCAAA 1638
|||||||||||||||||||||||||||| ||||||| | || |||||||||||||||||
Sbjct 1619 GAGAAAAACAAAAAGAACAATGTGATGAACTGATGAT-GATGATTGTGTCTCTAACCAAA 1677
Query 1639 CAACAAGGAGAGGTAGGGTAATGTCAGTAAAGTGAATTAGGATGTTGCCATTGTTCATGC 1698
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 1678 CAACAAGGAGAGGTAGGGTAATGTCTGTAAAGTGAATTAGGATGTTACCATTGTTCATGC 1737
Query 1699 TTCCCATCTCTCTCTCCATCGTCCATATCTGTGTAGGCAGCTTTGTTCTTTGTTCCCTCG 1758
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1738 TTCCCATCTCTCTC-C-ATCGTCCATATCTGTGTAGGCAGCTTTGTTCTTTGTTCCCTCG 1795
Query 1759 TGttttttttAGACTCT-GTTTCTCTTATTCTATTTTGTCTC-TTAGGATTTTTAGGAGT 1816
||||||||||||||| | || ||||||||||||||||||||| ||||| |||||||||||
Sbjct 1796 TGTTTTTTTTAGACTGTTGTGTCTCTTATTCTATTTTGTCTCCTTAGGCTTTTTAGGAGT 1855
Query 1817 TTGTTTGGTGTTGATGTTTATCAAAA-CGCTTATGTAATTTTTATGACCACTTCAACTTT 1875
| ||| | | | |||||||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1856 T-GTT-G-T-T-GATGTTTATCAAAAACGCTTATGTAATTTTTATGACCACTTCTACTTT 1910
Query 1876 T-ATGATGGTTTCTTCTTCAGTCTCTTACGTGATGTAGT 1913
| |||||||||||||| |||||||||||| |||||||
Sbjct 1911 TTATGATGGTTTCTTCA--AGTCTCTTACGTTATGTAGT 1947
> AT3G18035.1 | Symbols: HON4 | winged-helix DNA-binding transcription
factor family protein | chr3:6169090-6171724 REVERSE
LENGTH=1903
Length=1903
Score = 213 bits (115), Expect = 5e-54
Identities = 203/243 (84%), Gaps = 15/243 (6%)
Strand=Plus/Plus
Query 286 CCCACCCTCCTTACTCTGACATGATTTGTACGGCGATTGCAGCGTTAAACGAACCAGATG 345
|||||||||||||||| || |||||||| | |||||||| |||||||||||||| ||||
Sbjct 357 CCCACCCTCCTTACTCCGAAATGATTTGCGCTGCGATTGCGGCGTTAAACGAACCGGATG 416
Query 346 GGTCAAGCAAGCA-AGCGATTTCGAGGTACATCGAAAGAAT-TTACACTGGGATT-CCTA 402
| || |||||| | || |||||||| |||||||| || || |||||| || || ||
Sbjct 417 GTTCGAGCAAG-ATGGCAATTTCGAGATACATCGAGAG-ATGTTACAC-CGGTTTAACTT 473
Query 403 CTGCTCATGGAGCTTTGTTGACACACCATCTCAAGACTTTGAAGACCAGTGG-GATTCTT 461
||||||||| ||||||||||| ||||||||||||||||||||||||||||| | |||||
Sbjct 474 CTGCTCATGCTGCTTTGTTGACTCACCATCTCAAGACTTTGAAGACCAGTGGTG-TTCTT 532
Query 462 A-TGATGGTTAAGAAATCTTACAAG-TTAGCT--T-CTACTCCTCCTCCTACTAGTGTAG 516
| |||||||||||||||||||| || ||| | || || |||||||| |||||||||
Sbjct 533 TCT-ATGGTTAAGAAATCTTACAAAATT-GCTGGTTCTTCTACTCCTCCTGCTAGTGTAG 590
Query 517 CTG 519
|||
Sbjct 591 CTG 593
Score = 73.1 bits (39), Expect = 9e-12
Identities = 41/42 (98%), Gaps = 0/42 (0%)
Strand=Plus/Plus
Query 1455 CAGACAGAAGCAGAGGCAATGCAAGAAGCTCTGTTCTAAAGA 1496
||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1571 CAGACAGAAGCAGAGGCAATGCAAGAAGCTCTGTTCTGAAGA 1612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94728428415
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5